CsGy4G013635 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G013635
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionTwo-component response regulator-like APRR7
LocationGy14Chr4: 18654198 .. 18655303 (+)
RNA-Seq ExpressionCsGy4G013635
SyntenyCsGy4G013635
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGCCACGTGTCCAGAGTAAATCTCCCGGATCCATACAATCTCTTCTAAGCTCCCGGCTTTAGATTTCGTTCCGCTTCTAAAACCCGTGGCCCCAAGTTTTCAGCCACGTTGGAAATATCTTCGTCCTGCGTGGCACATTTGGACCATCCCACAGCTTCAATTTGTCCACGTCATCCCCCCGCGTACTCTCTGCAATATCTTCTTCCATTTTTTTTCTTTAATTTTTCTCTTCCAATTAGTTCCGAAGAGAAAAGAAAAAAAGAAAAAAAACTGAAAATTCGGCCATTACCCTCTTTCTTCAACCTCCAGCCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGTTCTGTTTCTAATTCTACTGCTGTTTTAATTCGTCCCTACTCGTTCTTTTGATGATTCATAGTTATTGTTTCATTTGCTTTTTCTTTGTTTTTTTTTTTTTTCAGTAATAATCAATAAGATTCTACATCAAGTTTGCATATGAGAAGTCTCTGTTTATTTTATAGATTACTACGTTGATCTTTCTAGGTAATTTGTGGATCGGTCTATTGAGGTTAATGTCAGGAGATTCTCGGTTTGCTTCACTTTAGGGTTTGATAAAAAAAAATCTTTTTTTTTAAAAAAATTTGATGGGTTCAGTCATTATATTCACTTTCTTGCTGCTGCTAGGAATAGGATTAATTGGTTAACGTCTGCAAACATTTGTTTTTCTTGTTCGTGTTATTCTTGTTTTTAATGTATAATGGTTAGGCTTTTAAGGTACTGTGGTTTTTCCAGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

mRNA sequence

ATGAAGCCACGTGTCCAGACCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

Coding sequence (CDS)

ATGAAGCCACGTGTCCAGACCTCCTTGTTTCCGAGGCTGGTCAAGCAACTTCGTCACTGCAACTTTACTCGCAAACAACATAGAACGCGAAATTCAGCGATTTCTGAATTGGAGATAAAGTTAAGCTTTGAGATTTTACGTTTCTTCAGACCCCCCTTTTCCCCTCACCTCCAGCCTCCAGATCGATCTGGAAGCTCTGATGGTGATGTTCTTCATACGCGGGAGCAGGCTACCATTGGATTTTGCGGCTCCTTGTTGGATTTAGAATACGCACTGAATCTGTCTCCAATCCCCCACCGTAGTCTGTGTGGACTTCATGGTCGTTTCCACTTGTTTAAGTTGAAGGGTGCCTTTGGGTTCTTGAACAACGAATAG

Protein sequence

MKPRVQTSLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLSFEILRFFRPPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFGFLNNE*
Homology
[Close]
BLAST of CsGy4G013635 vs. NCBI nr
Match: KAE8649517.1 (hypothetical protein Csa_023879, partial [Cucumis sativus])

HSP 1 Score: 164 bits (415), Expect = 2.76e-50
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 51  PPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFH 110
           PPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFH
Sbjct: 1   PPFSPHLQPPDRSGSSDGDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFH 60

Query: 111 LFKLKGAFGFLNNE 124
           LFKLKGAFGFLNNE
Sbjct: 61  LFKLKGAFGFLNNE 74

[Close]
BLAST of CsGy4G013635 vs. NCBI nr
Match: KAA0047313.1 (two-component response regulator-like APRR7 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.85e-20
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 73  TREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFG 119
           +REQATIGFCGSLLDLEYALNLSPI HRSLCGLHGRF+LFKLKGAFG
Sbjct: 5   SREQATIGFCGSLLDLEYALNLSPILHRSLCGLHGRFYLFKLKGAFG 51

[Close]
BLAST of CsGy4G013635 vs. ExPASy TrEMBL
Match: A0A0A0KZE3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293040 PE=4 SV=1)

HSP 1 Score: 247 bits (630), Expect = 1.90e-82
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 8   SLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLSFEILRFFRPPFSPHLQPPDRSGSSD 67
           SLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLSFEILRFFRPPFSPHLQPPDRSGSSD
Sbjct: 26  SLFPRLVKQLRHCNFTRKQHRTRNSAISELEIKLSFEILRFFRPPFSPHLQPPDRSGSSD 85

Query: 68  GDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFGFLNNE 124
           GDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFGFLNNE
Sbjct: 86  GDVLHTREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFGFLNNE 142

[Close]
BLAST of CsGy4G013635 vs. ExPASy TrEMBL
Match: A0A5A7TUS5 (Two-component response regulator-like APRR7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001300 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.95e-21
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 73  TREQATIGFCGSLLDLEYALNLSPIPHRSLCGLHGRFHLFKLKGAFG 119
           +REQATIGFCGSLLDLEYALNLSPI HRSLCGLHGRF+LFKLKGAFG
Sbjct: 5   SREQATIGFCGSLLDLEYALNLSPILHRSLCGLHGRFYLFKLKGAFG 51

The following BLAST results are available for this feature:
BLAST of CsGy4G013635 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G013635 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649517.12.76e-50100.00hypothetical protein Csa_023879, partial [Cucumis sativus][more]
KAA0047313.11.85e-2093.62two-component response regulator-like APRR7 [Cucumis melo var. makuwa][more]
BLAST of CsGy4G013635 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZE31.90e-82100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G293040 PE=4 SV=1[more]
A0A5A7TUS58.95e-2193.62Two-component response regulator-like APRR7 OS=Cucumis melo var. makuwa OX=11946... [more]
BLAST of CsGy4G013635 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G013635.1CsGy4G013635.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0016310 phosphorylation
biological_process GO:0048511 rhythmic process
cellular_component GO:0005634 nucleus
molecular_function GO:0016301 kinase activity