CsGy4G011620 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G011620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 11666541 .. 11667082 (-)
RNA-Seq Expression	CsGy4G011620
Synteny	CsGy4G011620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGAGAATCCGCTCCGATCCTCTTCGCTTTGGTGTTCTATCCTCTGCGCACATTGATCTCTCCATTGTTTCTCGTTTTTAATCTGATTTGTTCATCGGATTACTATTCCTCTAATTCTTACAGTAATCCGGTCTTTTTTTTCCTTTTTTTATTTCCTCTTTTATCTTTTTTTTTGTACCGCGTCAGTGACGTAAAGAGCGTTTGGCAAATCGGATGTTTTTTTTGTACCTGTTTGTTCGTATTTGATTTATGCGTAATTTGTCTCTTGGTTGAATCGATTCGGTGTTTTTAATTGTTTTGGCATCGATTGATAGGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

mRNA sequence

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Coding sequence (CDS)

ATGCTGCATTGCTCTCACTGCCTCACACATCGCGAACCCGATCGCTTCGATGACTTCGTGTGTTGTTCGGGATGCGGCAAGGTGCTTGGGCAGTTTTTTGGAGGAAAGTACATTGATCATAGCAAACCTATACTCGGAACCGCTACCAAATTGAAGAAGAGGAAGAAGGAGAAGAAGCAGCAACTTGAGAAGATTAGAATGGATACCACGGATCAACTCGCGGCATAA

Protein sequence

MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQQLEKIRMDTTDQLAA*

Homology

[Close]

BLAST of CsGy4G011620 vs. NCBI nr
Match: KGN54032.1 (hypothetical protein Csa_021665 [Cucumis sativus])

HSP 1 Score: 160 bits (406), Expect = 9.08e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 75
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

[Close]

BLAST of CsGy4G011620 vs. NCBI nr
Match: KAG6605847.1 (hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035795.1 hypothetical protein SDJN02_02594 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128 bits (322), Expect = 6.18e-37
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCL H E DRFDDFVCCSGCGKVLGQFFGGKYIDHSKP+LG  TKLKKRK EKKQ
Sbjct: 1  MLHCSHCLIHCEADRFDDFVCCSGCGKVLGQFFGGKYIDHSKPMLGKDTKLKKRKTEKKQ 60

Query: 61 QLEKIRMDTTD 71
          + EKI MD+ D
Sbjct: 61 KHEKIEMDSAD 71

[Close]

BLAST of CsGy4G011620 vs. ExPASy TrEMBL
Match: A0A0A0L0C4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1)

HSP 1 Score: 160 bits (406), Expect = 4.40e-50
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 0


Query: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60
          MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ
Sbjct: 1  MLHCSHCLTHREPDRFDDFVCCSGCGKVLGQFFGGKYIDHSKPILGTATKLKKRKKEKKQ 60

Query: 61 QLEKIRMDTTDQLAA 75
          QLEKIRMDTTDQLAA
Sbjct: 61 QLEKIRMDTTDQLAA 75

The following BLAST results are available for this feature:

BLAST of CsGy4G011620 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G011620 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN54032.1	9.08e-50	100.00	hypothetical protein Csa_021665 [Cucumis sativus]	[more]
KAG6605847.1	6.18e-37	83.10	hypothetical protein SDJN03_03164, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy4G011620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L0C4	4.40e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G269150 PE=4 SV=1	[more]

BLAST of CsGy4G011620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 48..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G011620.2	CsGy4G011620.2	mRNA