CsGy4G011180 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G011180
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr4: 10485560 .. 10486120 (-)
RNA-Seq Expression	CsGy4G011180
Synteny	CsGy4G011180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTGACTATTTCTTGAAGTTTAAACTTCGTATAAACATTTGAGGTCAAAATTAAATTTATTTCAACAATATATAATTTGCACGATCGATTCCTTCCTAAAAGTTGAAGGTTTGTTCCCGCTCTATCAAACTTGAAGTAAAAAAGTACATAAATATTAGATGAAATGCATATATTTTAACTAATCAACCGCTATATTTAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

mRNA sequence

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

Coding sequence (CDS)

ATGGAAGAACAGCAATCAGGAGCTCCAAAAGATTGTCATAGCAATCTATATGACTATCAAGAGTTTAAGGCTATGATTGGTCATCTCAACAAAGCCACTCATTTCAGCCCCAGTGTTTTATCTAACCATCTTATCAATTCGCCGTTTTATCGTCAACGTCTGAATGAAATTTACAAAAATAGTATTGGATCAACTAAGAAGATCATGTGGTATGAAACAGGTCGGCAAAAAGAAAACATTGAGACCTCAAAACGAAGAACAAAACAAAGGGGGATGATATCAAATGCATCACTTGCTGGGAGGCTATGGAAGCAAATCAAAGTAGGGCTAATGGGCATTCTTCCAAAGAAAGACCTGAAGTAA

Protein sequence

MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK*

Homology

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KGN53885.1 (hypothetical protein Csa_011823 [Cucumis sativus])

HSP 1 Score: 239 bits (610), Expect = 1.79e-79
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQK NIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KDP31321.1 (hypothetical protein JCGZ_11697 [Jatropha curcas])

HSP 1 Score: 58.2 bits (139), Expect = 9.47e-08
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 118
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: EEF47791.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 55.8 bits (133), Expect = 7.11e-07
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 9   PKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
            K+IM     ++  + + S++ ++    + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQRYSDKKASRKGSR----VMSGGFASRLWKKIKEGLL 139

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KAF4392625.1 (hypothetical protein F8388_003045 [Cannabis sativa])

HSP 1 Score: 55.8 bits (133), Expect = 8.51e-07
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 14  SNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIM 73
           S LYD  E  A++  LNKA      FSP  + N   NSPFYR+R N+IYK +  S+KK+ 
Sbjct: 47  STLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNP--NSPFYRKRQNQIYKENKESSKKLT 106

Query: 74  WYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
                     ++ SK R  +   +    +  RLWK++K GL+
Sbjct: 107 LSNLS-SASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

[Close]

BLAST of CsGy4G011180 vs. NCBI nr
Match: KAF4403081.1 (hypothetical protein G4B88_027852 [Cannabis sativa])

HSP 1 Score: 55.1 bits (131), Expect = 1.67e-06
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 14  SNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIM 73
           S LYD  E  A++  LNKA      FSP  + N   NSPFYR+R N+IYK +  S+KK+ 
Sbjct: 47  STLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNP--NSPFYRKRHNQIYKENKESSKKLT 106

Query: 74  WYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
                     ++ SK R  +   +    +  RLWK++K GL+
Sbjct: 107 LSNLS-SASILDGSKSRYSRGAWVVTRGVMTRLWKKVKQGLL 145

[Close]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL
Match: A0A0A0KW83 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 8.69e-80
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60
           MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN
Sbjct: 1   MEEQQSGAPKDCHSNLYDYQEFKAMIGHLNKATHFSPSVLSNHLINSPFYRQRLNEIYKN 60

Query: 61  SIGSTKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120
           SIGSTKKIMWYETGRQK NIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK
Sbjct: 61  SIGSTKKIMWYETGRQKGNIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKDLK 120

[Close]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL
Match: A0A067K525 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11697 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 4.58e-08
Identity = 42/115 (36.52%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 8   APKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIG 67
           +P+   S LYD  E +A+   LNKA       SP+++S   + SPFY QRL+ IYK +  
Sbjct: 38  SPRHNGSTLYDSFELRAVTNQLNKAIQSLNCSSPTLMS--YLKSPFYGQRLDSIYKENAK 97

Query: 68  STKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLMGILPKKD 118
           + KKIM  +  R+  +I+    RT   G++S      RLWK++K GL+    + D
Sbjct: 98  TPKKIMGSQLARR--SIDKRASRTAGGGLMS------RLWKKVKQGLLWSKQRND 142

[Close]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL
Match: B9RLR6 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1470430 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.44e-07
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 9   PKDCHSNLYDYQEFKAMIGHLNKATHF----SPSVLSNHLINSPFYRQRLNEIYKNSIGS 68
           P+   S LYD  EF+A+   LNKA       SP+ +S   + SPFY  RL+ IYK +  +
Sbjct: 39  PRHNGSTLYDSYEFRAVTEQLNKAMQSLNSSSPTFMS--YLKSPFYSHRLDSIYKENSET 98

Query: 69  TKKIMWYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
            K+IM     ++  + + S++ ++    + +   A RLWK+IK GL+
Sbjct: 99  QKRIMCSRINQRYSDKKASRKGSR----VMSGGFASRLWKKIKEGLL 139

[Close]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL
Match: A0A7J6HC11 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.12e-07
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 14  SNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIM 73
           S LYD  E  A++  LNKA      FSP  + N   NSPFYR+R N+IYK +  S+KK+ 
Sbjct: 47  STLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNP--NSPFYRKRQNQIYKENKESSKKLT 106

Query: 74  WYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
                     ++ SK R  +   +    +  RLWK++K GL+
Sbjct: 107 LSNLS-SASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

[Close]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL
Match: A0A803P9L1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.12e-07
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 14  SNLYDYQEFKAMIGHLNKATH----FSPSVLSNHLINSPFYRQRLNEIYKNSIGSTKKIM 73
           S LYD  E  A++  LNKA      FSP  + N   NSPFYR+R N+IYK +  S+KK+ 
Sbjct: 47  STLYDSYELHAVVHQLNKAIQGSKAFSPPYIYNP--NSPFYRKRQNQIYKENKESSKKLT 106

Query: 74  WYETGRQKENIETSKRRTKQRGMISNASLAGRLWKQIKVGLM 111
                     ++ SK R  +   +    +  RLWK++K GL+
Sbjct: 107 LSNLS-SASILDGSKSRYSRGAWVVTREVVTRLWKKVKQGLL 145

The following BLAST results are available for this feature:

BLAST of CsGy4G011180 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G011180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN53885.1	1.79e-79	99.17	hypothetical protein Csa_011823 [Cucumis sativus]	[more]
KDP31321.1	9.47e-08	36.52	hypothetical protein JCGZ_11697 [Jatropha curcas]	[more]
EEF47791.1	7.11e-07	34.58	conserved hypothetical protein [Ricinus communis]	[more]
KAF4392625.1	8.51e-07	37.25	hypothetical protein F8388_003045 [Cannabis sativa]	[more]
KAF4403081.1	1.67e-06	37.25	hypothetical protein G4B88_027852 [Cannabis sativa]	[more]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW83	8.69e-80	99.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G179690 PE=4 SV=1	[more]
A0A067K525	4.58e-08	36.52	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_11697 PE=4 SV=1	[more]
B9RLR6	3.44e-07	34.58	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1470430 PE=4 SV=1	[more]
A0A7J6HC11	4.12e-07	37.25	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_003045 PE=4 SV=1	[more]
A0A803P9L1	4.12e-07	37.25	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CsGy4G011180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G011180.2	CsGy4G011180.2	mRNA