CsGy4G010430 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G010430
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NADH:ubiquinone oxidoreductase, ESSS subunit
Location	Gy14Chr4: 9296301 .. 9296627 (-)
RNA-Seq Expression	CsGy4G010430
Synteny	CsGy4G010430

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGA

mRNA sequence

ATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGA

Coding sequence (CDS)

ATGCTCCGACACCGCCTTCTCTCTTCACTCCGTACCCGTGGTGGAGCCGCCGCTGGACGGAGCCGGTGGACCAGTCCCGGCCACGAGGAACGCCCCAAGGGCTATCTTTTCAATCGGACGCCGCTTCCACCAGGTCAGTCCCGTAAATGGGAGGATTGGGAGCTTCCTTGTTATGTTACTAGTTTTCTTACTATTGTGATTCTTGGCGTTGGCCTCAACGCCAAGCCTGATCTCACAATTGAGACTTGGGCTCACCAGAAAGCCCTCGAGCGCCTTGAGATGGAGAAACTGGGTATATCTGGCTCCGGATCATCTGAATCCGATTGA

Protein sequence

MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD*

Homology

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BLAST of CsGy4G010430 vs. NCBI nr
Match: XP_004150765.1 (uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hypothetical protein Csa_019136 [Cucumis sativus])

HSP 1 Score: 226 bits (576), Expect = 1.14e-74
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

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BLAST of CsGy4G010430 vs. NCBI nr
Match: TYK00850.1 (uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (565), Expect = 5.41e-73
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

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BLAST of CsGy4G010430 vs. NCBI nr
Match: XP_008465110.1 (PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 uncharacterized protein E6C27_scaffold2484G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 220 bits (560), Expect = 3.14e-72
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CsGy4G010430 vs. NCBI nr
Match: XP_038881129.1 (uncharacterized protein LOC120072731 [Benincasa hispida])

HSP 1 Score: 218 bits (556), Expect = 1.89e-71
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLL SLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 13  MLRHRLLPSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 72

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLG+SGSGSSESD
Sbjct: 73  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGVSGSGSSESD 120

[Close]

BLAST of CsGy4G010430 vs. NCBI nr
Match: XP_022928682.1 (uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 uncharacterized protein LOC111803776 [Cucurbita pepo subsp. pepo] >KAG6603240.1 hypothetical protein SDJN03_03849, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033542.1 hypothetical protein SDJN02_03264, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215 bits (548), Expect = 2.13e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

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BLAST of CsGy4G010430 vs. ExPASy TrEMBL
Match: A0A0A0KYE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1)

HSP 1 Score: 226 bits (576), Expect = 5.50e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CsGy4G010430 vs. ExPASy TrEMBL
Match: A0A5D3BP74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00110 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 2.62e-73
Identity = 106/108 (98.15%), Postives = 106/108 (98.15%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CsGy4G010430 vs. ExPASy TrEMBL
Match: A0A5A7VJ63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00220 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.52e-72
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CsGy4G010430 vs. ExPASy TrEMBL
Match: A0A1S3CN13 (uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.52e-72
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHR LSSLRTRGGAAAGRSRWTSPGHEE PKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRFLSSLRTRGGAAAGRSRWTSPGHEEHPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108

[Close]

BLAST of CsGy4G010430 vs. ExPASy TrEMBL
Match: A0A6J1EKL9 (uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC111435525 PE=4 SV=1)

HSP 1 Score: 215 bits (548), Expect = 1.03e-70
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MLRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVT 60
           MLRHRLLSSLRTRGGAAAG+SRWTSPGHE+RPKGYLFNRTP PPGQSRKWEDWELPCYVT
Sbjct: 1   MLRHRLLSSLRTRGGAAAGQSRWTSPGHEDRPKGYLFNRTPPPPGQSRKWEDWELPCYVT 60

Query: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGSSESD 108
           SFLTIVILGVGLNAKPDLTIETWAHQKALERLEME LGISGS SSESD
Sbjct: 61  SFLTIVILGVGLNAKPDLTIETWAHQKALERLEMENLGISGSVSSESD 108

[Close]

BLAST of CsGy4G010430 vs. TAIR 10
Match: AT2G42310.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57785.1); Has 115 Blast hits to 115 proteins in 48 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 44; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 78/103 (75.73%), Postives = 85/103 (82.52%), Query Frame = 0


Query: 2   LRHRLLSSLRTRGGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTS 61
           LR+R+ S     G  +AG SRW +PGHEERPKGY  NRTP  PGQSRKWEDWELPCY+TS
Sbjct: 14  LRNRIFS---RSGSTSAGPSRWATPGHEERPKGYFMNRTPPAPGQSRKWEDWELPCYITS 73

Query: 62  FLTIVILGVGLNAKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           FLTIVILGVGLNAKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 74  FLTIVILGVGLNAKPDLSIETWAHQKALERLEMEKLATAGDSS 113

[Close]

BLAST of CsGy4G010430 vs. TAIR 10
Match: AT3G57785.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G42310.1); Has 121 Blast hits to 121 proteins in 51 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 48; Plants - 67; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 165.6 bits (418), Expect = 2.2e-41
Identity = 74/91 (81.32%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 14  GGAAAGRSRWTSPGHEERPKGYLFNRTPLPPGQSRKWEDWELPCYVTSFLTIVILGVGLN 73
           G  + G SRW +PGHEERPKGY  NRTP PPGQSRKWEDWELPCY+TSFLTIVILGVGLN
Sbjct: 23  GSTSTGPSRWATPGHEERPKGYFMNRTPPPPGQSRKWEDWELPCYITSFLTIVILGVGLN 82

Query: 74  AKPDLTIETWAHQKALERLEMEKLGISGSGS 105
           AKPDL+IETWAHQKALERLEMEKL  +G  S
Sbjct: 83  AKPDLSIETWAHQKALERLEMEKLASAGDSS 113

The following BLAST results are available for this feature:

BLAST of CsGy4G010430 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G010430 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150765.1	1.14e-74	100.00	uncharacterized protein LOC101209235 [Cucumis sativus] >KGN53869.1 hypothetical ...	[more]
TYK00850.1	5.41e-73	98.15	uncharacterized protein E5676_scaffold509G00110 [Cucumis melo var. makuwa]	[more]
XP_008465110.1	3.14e-72	97.22	PREDICTED: uncharacterized protein LOC103502799 [Cucumis melo] >KAA0067818.1 unc...	[more]
XP_038881129.1	1.89e-71	95.37	uncharacterized protein LOC120072731 [Benincasa hispida]	[more]
XP_022928682.1	2.13e-70	95.37	uncharacterized protein LOC111435525 [Cucurbita moschata] >XP_023544082.1 unchar...	[more]

BLAST of CsGy4G010430 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KYE7	5.50e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G173560 PE=4 SV=1	[more]
A0A5D3BP74	2.62e-73	98.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VJ63	1.52e-72	97.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3CN13	1.52e-72	97.22	uncharacterized protein LOC103502799 OS=Cucumis melo OX=3656 GN=LOC103502799 PE=...	[more]
A0A6J1EKL9	1.03e-70	95.37	uncharacterized protein LOC111435525 OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]

BLAST of CsGy4G010430 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42310.1	2.2e-41	75.73	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57785.1	2.2e-41	81.32	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR40637:SF3	BNAA03G19790D PROTEIN	coord: 3..100
None	No IPR available	PANTHER	PTHR40637	ESSS SUBUNIT OF NADH:UBIQUINONE OXIDOREDUCTASE (COMPLEX I) PROTEIN	coord: 3..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G010430.2	CsGy4G010430.2	mRNA