CsGy4G010267 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G010267
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationGy14Chr4: 9020803 .. 9021186 (-)
RNA-Seq ExpressionCsGy4G010267
SyntenyCsGy4G010267
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA

mRNA sequence

ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA

Coding sequence (CDS)

ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA

Protein sequence

MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL*
Homology
BLAST of CsGy4G010267 vs. NCBI nr
Match: KAE8649356.1 (hypothetical protein Csa_019169, partial [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 6.10e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0

Query: 23  TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL 82
           TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL
Sbjct: 1   TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL 60

Query: 83  CVQHMTNILGASLVPVDERMDSMIYVRCNSY 113
           CVQHMTNILGASLVPVDERMDSMIYVRCNSY
Sbjct: 61  CVQHMTNILGASLVPVDERMDSMIYVRCNSY 91

BLAST of CsGy4G010267 vs. NCBI nr
Match: XP_021716606.1 (uncharacterized protein LOC110684457 [Chenopodium quinoa])

HSP 1 Score: 94.4 bits (233), Expect = 1.78e-19
Identity = 59/130 (45.38%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPA 63
           IID GASHHV GN N L   ++IIS  V LPDG  A  T EG   L      + +L  P 
Sbjct: 174 IIDTGASHHVTGNDNFLQDAHSIISCPVGLPDGAKAMATKEGRVVLADGITLEHILFVPQ 233

Query: 64  FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
              NLI +S+LIDD+NC VRFT  LC  H  +    SL+   ER+D + Y R    + A+
Sbjct: 234 LNCNLISVSKLIDDSNCFVRFTNSLCAIHDQS--SGSLIGGGERIDGLYYFRRLPKVCAL 293

Query: 124 KVPEISEFEL 127
             P+IS FEL
Sbjct: 294 TGPDISTFEL 301

BLAST of CsGy4G010267 vs. NCBI nr
Match: XP_021766294.1 (uncharacterized protein LOC110730780 [Chenopodium quinoa])

HSP 1 Score: 88.2 bits (217), Expect = 2.61e-17
Identity = 55/136 (40.44%), Postives = 74/136 (54.41%), Query Frame = 0

Query: 1   MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLL 60
           +  IID G SHHV G+ + L   ++++S  V LPDGT A  T EG   L      + VL 
Sbjct: 387 LSWIIDTGTSHHVTGDASCLLDVHSMLSCPVGLPDGTQALATKEGRVYLADNITLENVLF 446

Query: 61  SPAFQHNLILMSQLIDDANCVVRFT-LLCV---QHMTNILGASLVPVDERMDSMIYVRCN 120
            P    NLI +S++IDD+NC VRFT  LC    QH  +++G       ER+D + Y R  
Sbjct: 447 VPQLNCNLISVSKMIDDSNCYVRFTDSLCAIQDQHSGSLIGGG-----ERIDGLYYFRRI 506

Query: 121 SYMYAVKVPEISEFEL 127
             + AV  P +S FEL
Sbjct: 507 PTVCAVTTPTVSTFEL 517

BLAST of CsGy4G010267 vs. NCBI nr
Match: XP_010681247.1 (PREDICTED: uncharacterized protein LOC104896228 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 87.8 bits (216), Expect = 3.33e-17
Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 0

Query: 1   MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLL 60
           +  I+D GASHHV G L  L+ T++I+   V LPDG     TM+G   L        VL 
Sbjct: 374 LSWILDTGASHHVTGTLACLSDTHSIMDCPVGLPDGQRVVATMKGRVILSPDLALNNVLY 433

Query: 61  SPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYM 120
            P    NLI +SQ+ID+++C+VRFT  LCV  + ++   +L+   ER D + Y      +
Sbjct: 434 VPTLTCNLISVSQMIDESSCIVRFTDSLCV--IQDLRSGNLIGAGERRDGLYYFCRIPTL 493

Query: 121 YAVKVPEISEFEL 127
           +AV  P +SEFEL
Sbjct: 494 HAVSTPVLSEFEL 504

BLAST of CsGy4G010267 vs. NCBI nr
Match: KYP64173.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 86.3 bits (212), Expect = 1.22e-16
Identity = 56/130 (43.08%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
           IID GAS+H+ GNL LL +T T+    V LP+G  A  T EG   L       +VL  P+
Sbjct: 325 IIDTGASNHMTGNLGLLHRTKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPS 384

Query: 64  FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
              NLI +SQLIDDANCVV+FT  LCV     +    L+ V ER + + Y R   +    
Sbjct: 385 LNCNLISVSQLIDDANCVVQFTNSLCVMQDRTL--RMLIRVGERRNGLYYFRGIRHEKVF 444

Query: 124 KVPEISEFEL 127
           K+ E+S F+L
Sbjct: 445 KMEEVSTFDL 452

BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match: A0A151TAW1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018763 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.92e-17
Identity = 56/130 (43.08%), Postives = 73/130 (56.15%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
           IID GAS+H+ GNL LL +T T+    V LP+G  A  T EG   L       +VL  P+
Sbjct: 325 IIDTGASNHMTGNLGLLHRTKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPS 384

Query: 64  FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
              NLI +SQLIDDANCVV+FT  LCV     +    L+ V ER + + Y R   +    
Sbjct: 385 LNCNLISVSQLIDDANCVVQFTNSLCVMQDRTL--RMLIRVGERRNGLYYFRGIRHEKVF 444

Query: 124 KVPEISEFEL 127
           K+ E+S F+L
Sbjct: 445 KMEEVSTFDL 452

BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match: A0A392NUX8 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0023950 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.35e-14
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
           IID GAS+H+ GNLN + +   I++  V LPDG     T EG   L        VL  P 
Sbjct: 8   IIDTGASNHLTGNLNEMCEVRDIVACPVGLPDGKRTNATKEGTVLLEGGLKLTNVLFVPK 67

Query: 64  FQHNLILMSQLIDDANCVVRFTL-LCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
              +LI +SQL D++NC+V+FT  LCV  M ++    L+   ER D + Y      + A 
Sbjct: 68  LSCSLISVSQLSDESNCIVQFTKKLCV--MQDLTSRMLIGAGERKDGLYYFCGLRMVKAC 127

Query: 124 KVPEISEFEL 127
           K+  +++ EL
Sbjct: 128 KIDGVNQVEL 135

BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match: A0A1S8ACL1 (Uncharacterized protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.54e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQR-----VLLSPA 63
           IID GASHH+ G+L LL    T+I+  V LPDG       +G+  L  R     VL  P+
Sbjct: 385 IIDTGASHHMTGSLKLLCDVKTVIACPVGLPDGKEVMAEKKGNIVLDGRLKLTNVLYVPS 444

Query: 64  FQHNLILMSQLIDDANCVVRFT 80
              NLIL+SQL++++NC+V+FT
Sbjct: 445 LNCNLILVSQLVEESNCIVQFT 466

BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match: A0A2K3PAJ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g008936 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.83e-11
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0

Query: 4   IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
           IID GAS+H+ GNL LL +   + +  V LPDG     T EG   L        VL  P 
Sbjct: 384 IIDTGASNHMTGNLRLLQELKNVQACPVGLPDGQKVCATKEGTTILEGGLKISNVLYVPK 443

Query: 64  FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 119
              +LI +SQLID+ +C+++FT  LCV  M +     L+ + ER+D + Y R      A+
Sbjct: 444 LNCSLISVSQLIDETHCMIQFTNSLCV--MQDRTSRMLIGLGERIDGLYYFRGIRQAKAL 503

BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match: A0A2K3MS94 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g016777 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.83e-11
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 0

Query: 2   ECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQ-----RVLLS 61
           E I+D GAS+H+ G L ++ + + I +  + LPDG  A  T EG   L +      VL  
Sbjct: 382 EWILDSGASNHMTGTLEIMRELHDIQTCPIGLPDGKNASATKEGVVLLDEGLKLYNVLYV 441

Query: 62  PAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMY 121
           P  + NLI +SQL+DD +C+V F+  LCV  M +     L+   +R D + Y R    + 
Sbjct: 442 PNLKCNLISLSQLMDDLDCIVHFSDKLCV--MQDRTSRMLIGAGKRRDGLYYFRTIQRVQ 501

Query: 122 AVKVPEISEFEL 127
           A  V  +++ EL
Sbjct: 502 ACSVVGVNQLEL 511

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649356.16.10e-58100.00hypothetical protein Csa_019169, partial [Cucumis sativus][more]
XP_021716606.11.78e-1945.38uncharacterized protein LOC110684457 [Chenopodium quinoa][more]
XP_021766294.12.61e-1740.44uncharacterized protein LOC110730780 [Chenopodium quinoa][more]
XP_010681247.13.33e-1739.85PREDICTED: uncharacterized protein LOC104896228 [Beta vulgaris subsp. vulgaris][more]
KYP64173.11.22e-1643.08Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... [more]
Match NameE-valueIdentityDescription
A0A151TAW15.92e-1743.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
A0A392NUX88.35e-1436.92Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0023950... [more]
A0A1S8ACL13.54e-1145.12Uncharacterized protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1[more]
A0A2K3PAJ33.83e-1138.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... [more]
A0A2K3MS943.83e-1134.85Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G010267.1CsGy4G010267.1mRNA