Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA
mRNA sequence
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA
Coding sequence (CDS)
ATGGAGTGTATTATTGATATTGGAGCATCTCATCATGTGATTGGCAATCTGAATTTGTTGACTCAGACAAACACAATCATCTCAAGTCTTGTAAGCTTGCCAGATGGGACTGTGGCATTCCCTACAATGGAGGGGCATGCTACCCTTTGCCAACGTGTTTTATTATCACCTGCCTTCCAACACAATTTAATATTGATGTCACAATTGATTGATGATGCTAATTGTGTTGTTCGATTTACACTACTTTGTGTGCAACATATGACCAACATTTTGGGAGCCTCATTGGTGCCGGTGGACGAAAGGATGGACTCTATGATTTACGTGCGGTGCAATTCTTACATGTATGCAGTAAAGGTTCCAGAAATATCTGAGTTTGAGTTATGA
Protein sequence
MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAVKVPEISEFEL*
Homology
BLAST of CsGy4G010267 vs. NCBI nr
Match:
KAE8649356.1 (hypothetical protein Csa_019169, partial [Cucumis sativus])
HSP 1 Score: 184 bits (467), Expect = 6.10e-58
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0
Query: 23 TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL 82
TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL
Sbjct: 1 TNTIISSLVSLPDGTVAFPTMEGHATLCQRVLLSPAFQHNLILMSQLIDDANCVVRFTLL 60
Query: 83 CVQHMTNILGASLVPVDERMDSMIYVRCNSY 113
CVQHMTNILGASLVPVDERMDSMIYVRCNSY
Sbjct: 61 CVQHMTNILGASLVPVDERMDSMIYVRCNSY 91
BLAST of CsGy4G010267 vs. NCBI nr
Match:
XP_021716606.1 (uncharacterized protein LOC110684457 [Chenopodium quinoa])
HSP 1 Score: 94.4 bits (233), Expect = 1.78e-19
Identity = 59/130 (45.38%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLLSPA 63
IID GASHHV GN N L ++IIS V LPDG A T EG L + +L P
Sbjct: 174 IIDTGASHHVTGNDNFLQDAHSIISCPVGLPDGAKAMATKEGRVVLADGITLEHILFVPQ 233
Query: 64 FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
NLI +S+LIDD+NC VRFT LC H + SL+ ER+D + Y R + A+
Sbjct: 234 LNCNLISVSKLIDDSNCFVRFTNSLCAIHDQS--SGSLIGGGERIDGLYYFRRLPKVCAL 293
Query: 124 KVPEISEFEL 127
P+IS FEL
Sbjct: 294 TGPDISTFEL 301
BLAST of CsGy4G010267 vs. NCBI nr
Match:
XP_021766294.1 (uncharacterized protein LOC110730780 [Chenopodium quinoa])
HSP 1 Score: 88.2 bits (217), Expect = 2.61e-17
Identity = 55/136 (40.44%), Postives = 74/136 (54.41%), Query Frame = 0
Query: 1 MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLL 60
+ IID G SHHV G+ + L ++++S V LPDGT A T EG L + VL
Sbjct: 387 LSWIIDTGTSHHVTGDASCLLDVHSMLSCPVGLPDGTQALATKEGRVYLADNITLENVLF 446
Query: 61 SPAFQHNLILMSQLIDDANCVVRFT-LLCV---QHMTNILGASLVPVDERMDSMIYVRCN 120
P NLI +S++IDD+NC VRFT LC QH +++G ER+D + Y R
Sbjct: 447 VPQLNCNLISVSKMIDDSNCYVRFTDSLCAIQDQHSGSLIGGG-----ERIDGLYYFRRI 506
Query: 121 SYMYAVKVPEISEFEL 127
+ AV P +S FEL
Sbjct: 507 PTVCAVTTPTVSTFEL 517
BLAST of CsGy4G010267 vs. NCBI nr
Match:
XP_010681247.1 (PREDICTED: uncharacterized protein LOC104896228 [Beta vulgaris subsp. vulgaris])
HSP 1 Score: 87.8 bits (216), Expect = 3.33e-17
Identity = 53/133 (39.85%), Postives = 75/133 (56.39%), Query Frame = 0
Query: 1 MECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLC-----QRVLL 60
+ I+D GASHHV G L L+ T++I+ V LPDG TM+G L VL
Sbjct: 374 LSWILDTGASHHVTGTLACLSDTHSIMDCPVGLPDGQRVVATMKGRVILSPDLALNNVLY 433
Query: 61 SPAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYM 120
P NLI +SQ+ID+++C+VRFT LCV + ++ +L+ ER D + Y +
Sbjct: 434 VPTLTCNLISVSQMIDESSCIVRFTDSLCV--IQDLRSGNLIGAGERRDGLYYFCRIPTL 493
Query: 121 YAVKVPEISEFEL 127
+AV P +SEFEL
Sbjct: 494 HAVSTPVLSEFEL 504
BLAST of CsGy4G010267 vs. NCBI nr
Match:
KYP64173.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])
HSP 1 Score: 86.3 bits (212), Expect = 1.22e-16
Identity = 56/130 (43.08%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
IID GAS+H+ GNL LL +T T+ V LP+G A T EG L +VL P+
Sbjct: 325 IIDTGASNHMTGNLGLLHRTKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPS 384
Query: 64 FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
NLI +SQLIDDANCVV+FT LCV + L+ V ER + + Y R +
Sbjct: 385 LNCNLISVSQLIDDANCVVQFTNSLCVMQDRTL--RMLIRVGERRNGLYYFRGIRHEKVF 444
Query: 124 KVPEISEFEL 127
K+ E+S F+L
Sbjct: 445 KMEEVSTFDL 452
BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match:
A0A151TAW1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018763 PE=4 SV=1)
HSP 1 Score: 86.3 bits (212), Expect = 5.92e-17
Identity = 56/130 (43.08%), Postives = 73/130 (56.15%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
IID GAS+H+ GNL LL +T T+ V LP+G A T EG L +VL P+
Sbjct: 325 IIDTGASNHMTGNLGLLHRTKTLQGCPVGLPNGKEAVATKEGDVILEGGQKISKVLYVPS 384
Query: 64 FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
NLI +SQLIDDANCVV+FT LCV + L+ V ER + + Y R +
Sbjct: 385 LNCNLISVSQLIDDANCVVQFTNSLCVMQDRTL--RMLIRVGERRNGLYYFRGIRHEKVF 444
Query: 124 KVPEISEFEL 127
K+ E+S F+L
Sbjct: 445 KMEEVSTFDL 452
BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match:
A0A392NUX8 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0023950 PE=4 SV=1)
HSP 1 Score: 73.6 bits (179), Expect = 8.35e-14
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
IID GAS+H+ GNLN + + I++ V LPDG T EG L VL P
Sbjct: 8 IIDTGASNHLTGNLNEMCEVRDIVACPVGLPDGKRTNATKEGTVLLEGGLKLTNVLFVPK 67
Query: 64 FQHNLILMSQLIDDANCVVRFTL-LCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 123
+LI +SQL D++NC+V+FT LCV M ++ L+ ER D + Y + A
Sbjct: 68 LSCSLISVSQLSDESNCIVQFTKKLCV--MQDLTSRMLIGAGERKDGLYYFCGLRMVKAC 127
Query: 124 KVPEISEFEL 127
K+ +++ EL
Sbjct: 128 KIDGVNQVEL 135
BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match:
A0A1S8ACL1 (Uncharacterized protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 3.54e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQR-----VLLSPA 63
IID GASHH+ G+L LL T+I+ V LPDG +G+ L R VL P+
Sbjct: 385 IIDTGASHHMTGSLKLLCDVKTVIACPVGLPDGKEVMAEKKGNIVLDGRLKLTNVLYVPS 444
Query: 64 FQHNLILMSQLIDDANCVVRFT 80
NLIL+SQL++++NC+V+FT
Sbjct: 445 LNCNLILVSQLVEESNCIVQFT 466
BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match:
A0A2K3PAJ3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g008936 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 3.83e-11
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 0
Query: 4 IIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATL-----CQRVLLSPA 63
IID GAS+H+ GNL LL + + + V LPDG T EG L VL P
Sbjct: 384 IIDTGASNHMTGNLRLLQELKNVQACPVGLPDGQKVCATKEGTTILEGGLKISNVLYVPK 443
Query: 64 FQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMYAV 119
+LI +SQLID+ +C+++FT LCV M + L+ + ER+D + Y R A+
Sbjct: 444 LNCSLISVSQLIDETHCMIQFTNSLCV--MQDRTSRMLIGLGERIDGLYYFRGIRQAKAL 503
BLAST of CsGy4G010267 vs. ExPASy TrEMBL
Match:
A0A2K3MS94 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratense OX=57577 GN=L195_g016777 PE=4 SV=1)
HSP 1 Score: 69.7 bits (169), Expect = 3.83e-11
Identity = 46/132 (34.85%), Postives = 70/132 (53.03%), Query Frame = 0
Query: 2 ECIIDIGASHHVIGNLNLLTQTNTIISSLVSLPDGTVAFPTMEGHATLCQ-----RVLLS 61
E I+D GAS+H+ G L ++ + + I + + LPDG A T EG L + VL
Sbjct: 382 EWILDSGASNHMTGTLEIMRELHDIQTCPIGLPDGKNASATKEGVVLLDEGLKLYNVLYV 441
Query: 62 PAFQHNLILMSQLIDDANCVVRFT-LLCVQHMTNILGASLVPVDERMDSMIYVRCNSYMY 121
P + NLI +SQL+DD +C+V F+ LCV M + L+ +R D + Y R +
Sbjct: 442 PNLKCNLISLSQLMDDLDCIVHFSDKLCV--MQDRTSRMLIGAGKRRDGLYYFRTIQRVQ 501
Query: 122 AVKVPEISEFEL 127
A V +++ EL
Sbjct: 502 ACSVVGVNQLEL 511
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAE8649356.1 | 6.10e-58 | 100.00 | hypothetical protein Csa_019169, partial [Cucumis sativus] | [more] |
XP_021716606.1 | 1.78e-19 | 45.38 | uncharacterized protein LOC110684457 [Chenopodium quinoa] | [more] |
XP_021766294.1 | 2.61e-17 | 40.44 | uncharacterized protein LOC110730780 [Chenopodium quinoa] | [more] |
XP_010681247.1 | 3.33e-17 | 39.85 | PREDICTED: uncharacterized protein LOC104896228 [Beta vulgaris subsp. vulgaris] | [more] |
KYP64173.1 | 1.22e-16 | 43.08 | Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca... | [more] |
Match Name | E-value | Identity | Description | |
A0A151TAW1 | 5.92e-17 | 43.08 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... | [more] |
A0A392NUX8 | 8.35e-14 | 36.92 | Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0023950... | [more] |
A0A1S8ACL1 | 3.54e-11 | 45.12 | Uncharacterized protein (Fragment) OS=Citrus limon OX=2708 PE=4 SV=1 | [more] |
A0A2K3PAJ3 | 3.83e-11 | 38.52 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... | [more] |
A0A2K3MS94 | 3.83e-11 | 34.85 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Trifolium pratens... | [more] |
Match Name | E-value | Identity | Description | |