CsGy4G010263 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G010263
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Retrotran_gag_3 domain-containing protein
Location	Gy14Chr4: 8986870 .. 8987437 (+)
RNA-Seq Expression	CsGy4G010263
Synteny	CsGy4G010263

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATCACAACATATCAAAGACCTACGTCTACCCTTCCTCTCTATTTTTTGTTCTCTCCATCAATGGCTTCCTACCAGTCTTCTTAAACAAAAGAAATTTCTGATCTTCCTCCTCACAAATATATGTAACCTCCTATTTATCACACTAGAATCAACAAATTATGTTTATTTGGAATTCCAATTCTCCAACATTTTGAGAGCACACAAGCTATACCGATTTGTTGATAACACAAGTACAAATCGATTTCAATTTCTTCAAACGCTACAAAATCTAGTTCATCTATAGTAGAAAATCAATCAACCACTTTGTCAAATCCTTTATATATGAAGATTAGATTGCTAAAGATCAAGTTCTTAGGACCTTGATCAATGTTACTTTATATGTAGAAGCCTTAGCCTACATTATTGGTTGTACTTCATCAAAGGAAGTCTCGTCTACACTTGAAAATCACTACTCAAATTTACGATCAAATCTTGCTAATCTCAAAACTAATCTTCAATTGATTTTAAAGAAGTATTTGATTCATACAAGAGGAGGTTCAAAACTTGCAAATGTGTTTCGGTAG

mRNA sequence

ATGGTATCACAACATATCAAAGACCTACGTCTACCCTTCCTCTCTATTTTTTGTTCTCTCCATCAATGGCTTCCTACCAGTCTTCTTAAACAAAAGAAATTTCTGATCTTCCTCCTCACAAATATATGTAACCTCCTATTTATCACACTAGAATCAACAAATTATGTTTATTTGGAATTCCAATTCTCCAACATTTTGAGAGCACACAAGCTATACCGATTTGTTGATAACACAAGTACAAATCGATTTCAATTTCTTCAAACGCTACAAAATCTAATTGCTAAAGATCAAGTTCTTAGGACCTTGATCAATGTTACTTTATATGTAGAAGCCTTAGCCTACATTATTGGTTGTACTTCATCAAAGGAAGTCTCGTCTACACTTGAAAATCACTACTCAAATTTACGATCAAATCTTGCTAATCTCAAAACTAATCTTCAATTGATTTTAAAGAAGTATTTGATTCATACAAGAGGAGGTTCAAAACTTGCAAATGTGTTTCGGTAG

Coding sequence (CDS)

ATGGTATCACAACATATCAAAGACCTACGTCTACCCTTCCTCTCTATTTTTTGTTCTCTCCATCAATGGCTTCCTACCAGTCTTCTTAAACAAAAGAAATTTCTGATCTTCCTCCTCACAAATATATGTAACCTCCTATTTATCACACTAGAATCAACAAATTATGTTTATTTGGAATTCCAATTCTCCAACATTTTGAGAGCACACAAGCTATACCGATTTGTTGATAACACAAGTACAAATCGATTTCAATTTCTTCAAACGCTACAAAATCTAATTGCTAAAGATCAAGTTCTTAGGACCTTGATCAATGTTACTTTATATGTAGAAGCCTTAGCCTACATTATTGGTTGTACTTCATCAAAGGAAGTCTCGTCTACACTTGAAAATCACTACTCAAATTTACGATCAAATCTTGCTAATCTCAAAACTAATCTTCAATTGATTTTAAAGAAGTATTTGATTCATACAAGAGGAGGTTCAAAACTTGCAAATGTGTTTCGGTAG

Protein sequence

MVSQHIKDLRLPFLSIFCSLHQWLPTSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTSTNRFQFLQTLQNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLENHYSNLRSNLANLKTNLQLILKKYLIHTRGGSKLANVFR*

Homology

[Close]

BLAST of CsGy4G010263 vs. NCBI nr
Match: TYK17989.1 (uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 4.76e-22
Identity = 67/152 (44.08%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 26  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN-------- 85
           +S  K+    +FLLTNICNL+ I L+STNY   +FQF  +L+AHKLY F+D         
Sbjct: 9   SSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDESIPTPPKT 68

Query: 86  ----TSTNRFQFLQTLQNLI------------AKDQVLRTLINVTLYVEALAYIIGCTSS 145
               T+ +     QT  +              AKDQ    LIN TL VEAL Y++GC SS
Sbjct: 69  ISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMFLINATLSVEALTYVVGCKSS 128

Query: 146 KEVSSTLENHYS-NLRSNLANLKTNLQLILKK 152
            +V  TLE HYS N R+N+ NLK++LQ I KK
Sbjct: 129 SQVWKTLERHYSSNTRTNIVNLKSDLQQISKK 160

[Close]

BLAST of CsGy4G010263 vs. NCBI nr
Match: XP_008448008.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 2.69e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. NCBI nr
Match: XP_008448007.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 3.11e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. NCBI nr
Match: XP_016900446.1 (PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo])

HSP 1 Score: 100 bits (248), Expect = 3.40e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. NCBI nr
Match: KAA0049700.1 (T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa])

HSP 1 Score: 100 bits (248), Expect = 4.62e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL
Match: A0A5D3D3T6 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002980 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.31e-22
Identity = 67/152 (44.08%), Postives = 86/152 (56.58%), Query Frame = 0


Query: 26  TSLLKQKKFLIFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDN-------- 85
           +S  K+    +FLLTNICNL+ I L+STNY   +FQF  +L+AHKLY F+D         
Sbjct: 9   SSTSKELSSPLFLLTNICNLISIRLDSTNYTLWKFQFEPMLKAHKLYGFIDESIPTPPKT 68

Query: 86  ----TSTNRFQFLQTLQNLI------------AKDQVLRTLINVTLYVEALAYIIGCTSS 145
               T+ +     QT  +              AKDQ    LIN TL VEAL Y++GC SS
Sbjct: 69  ISNPTTASSSATTQTTSSSTTEISNPPYEDWQAKDQAFMFLINATLSVEALTYVVGCKSS 128

Query: 146 KEVSSTLENHYS-NLRSNLANLKTNLQLILKK 152
            +V  TLE HYS N R+N+ NLK++LQ I KK
Sbjct: 129 SQVWKTLERHYSSNTRTNIVNLKSDLQQISKK 160

[Close]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL
Match: A0A1S3BIR3 (uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.30e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL
Match: A0A1S3BI58 (uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.50e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL
Match: A0A1S4DWT9 (uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490319 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 1.64e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

[Close]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL
Match: A0A5D3CLI6 (T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=1)

HSP 1 Score: 100 bits (248), Expect = 2.24e-21
Identity = 68/144 (47.22%), Postives = 92/144 (63.89%), Query Frame = 0


Query: 24  LPTSLLKQKKFL-IFLLTNICNLLFITLESTNYVYLEFQFSNILRAHKLYRFVDNTS--- 83
           LP+S  ++     IFLL+NICNL+ + L+STN+V  +FQ + IL+AHKLY F+D T+   
Sbjct: 7   LPSSSAEKDSLSPIFLLSNICNLISMRLDSTNFVLWKFQLTAILKAHKLYGFIDGTNPCP 66

Query: 84  --TNRFQFLQTL--------QNLIAKDQVLRTLINVTLYVEALAYIIGCTSSKEVSSTLE 143
             TN      T+        ++ IAKDQ L T+IN TL  EALAY++G TSSK+V   L 
Sbjct: 67  PRTNNSSSTSTVPPQSNPSYEDWIAKDQALMTVINATLSPEALAYVVGSTSSKQVWDVLA 126

Query: 144 NHYSN-LRSNLANLKTNLQLILKK 152
             YS+  RSN+ NLK++LQ I KK
Sbjct: 127 KLYSSGSRSNVVNLKSDLQTIYKK 150

The following BLAST results are available for this feature:

BLAST of CsGy4G010263 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G010263 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK17989.1	4.76e-22	44.08	uncharacterized protein E5676_scaffold306G002980 [Cucumis melo var. makuwa]	[more]
XP_008448008.1	2.69e-21	47.22	PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]	[more]
XP_008448007.1	3.11e-21	47.22	PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]	[more]
XP_016900446.1	3.40e-21	47.22	PREDICTED: uncharacterized protein LOC103490319 isoform X1 [Cucumis melo]	[more]
KAA0049700.1	4.62e-21	47.22	T4.5 [Cucumis melo var. makuwa] >TYK12172.1 T4.5 [Cucumis melo var. makuwa]	[more]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D3T6	2.31e-22	44.08	Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BIR3	1.30e-21	47.22	uncharacterized protein LOC103490319 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BI58	1.50e-21	47.22	uncharacterized protein LOC103490319 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S4DWT9	1.64e-21	47.22	uncharacterized protein LOC103490319 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3CLI6	2.24e-21	47.22	T4.5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001120 PE=4 SV=...	[more]

BLAST of CsGy4G010263 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G010263.1	CsGy4G010263.1	mRNA