CsGy4G009980 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G009980
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic
Location	Gy14Chr4: 8434572 .. 8434826 (-)
RNA-Seq Expression	CsGy4G009980
Synteny	CsGy4G009980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGGACATGAATTCTATCTCTCTGAATAGGGAGATAGCAAAGAAATGCATTCCTTTTGGTTATCGCCTTGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATCCAGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAA

mRNA sequence

ATGAATTCGGACATGAATTCTATCTCTCTGAATAGGGAGATAGCAAAGAAATGCATTCCTTTTGGTTATCGCCTTGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATCCAGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAA

Coding sequence (CDS)

ATGAATTCGGACATGAATTCTATCTCTCTGAATAGGGAGATAGCAAAGAAATGCATTCCTTTTGGTTATCGCCTTGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATCCAGTTTTAGCCGATCTCCCTATCGGTGTTTTTTTATGGATTGCCATTTCAAGTGTTGCTCCCATCGGACTTCTTATGTCAGGATATGGATCCAATAA

Protein sequence

MNSDMNSISLNREIAKKCIPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSGSSFSRSPYRCFFMDCHFKCCSHRTSYVRIWIQ*

Homology

[Close]

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot
Match: Q2QD36 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.3e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot
Match: A0A390 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=13443 GN=ndhA PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPFGYRLVLADL IGVFLWIAISS+APIGLLMSG
Sbjct: 116 IPFGYRLVLADLTIGVFLWIAISSIAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot
Match: Q06GU1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Drimys granadensis OX=224735 GN=ndhA PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPFGYRLVLADL IGVFLWIAISS+APIGLLMSG
Sbjct: 116 IPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot
Match: Q0G9G4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=ndhA PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPFGYRLVLADL IGVFLWIAISS+APIGLLMSG
Sbjct: 116 IPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot
Match: Q09FZ1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis OX=4403 GN=ndhA PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-10
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPFGYRLVLADL IGVFLWIAISS+APIGLLMSG
Sbjct: 116 IPFGYRLVLADLSIGVFLWIAISSIAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. NCBI nr
Match: WP_201356289.1 (NADH-quinone oxidoreductase subunit H, partial [Salmonella enterica] >MBK5591059.1 NADH-quinone oxidoreductase subunit H [Salmonella enterica subsp. enterica serovar Typhi])

HSP 1 Score: 63.9 bits (154), Expect = 7.44e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 0


Query: 19 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
          IPFGYRLVLADL IGVFLWIAISSVAP+GLLMSG
Sbjct: 35 IPFGYRLVLADLSIGVFLWIAISSVAPVGLLMSG 68

[Close]

BLAST of CsGy4G009980 vs. NCBI nr
Match: YP_247655.1 (NADH dehydrogenase subunit 1 [Cucumis sativus] >CAJ00814.1 NADH dehydrogenase subunit 1 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 8.70e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 112 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 145

[Close]

BLAST of CsGy4G009980 vs. NCBI nr
Match: YP_009004096.1 (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix] >Q2QD36.1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit 1; Short=NDH subunit 1; AltName: Full=NADH-plastoquinone oxidoreductase subunit 1 [Cucumis sativus] >ALF03356.1 NADH dehydrogenase subunit 1 [Cucumis sativus var. hardwickii] >AVE15387.1 NdhA [Cucumis sativus var. sativus] >AAZ94703.1 NADH dehydrogenase subunit 1 [Cucumis sativus] >ABI97468.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucumis sativus] >ABI98799.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 8.79e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. NCBI nr
Match: QCY72897.1 (NdhA [Cucumis hystrix])

HSP 1 Score: 67.4 bits (163), Expect = 8.79e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. NCBI nr
Match: YP_004841840.1 (NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo] >YP_009860130.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. agrestis] >AEM76950.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo] >QJF46441.1 NADH dehydrogenase subunit 1 [Cucumis melo] >QKK36714.1 NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. agrestis])

HSP 1 Score: 67.4 bits (163), Expect = 8.79e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL
Match: A0A218KGA1 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.26e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL
Match: A0A1X9Q1Y4 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.26e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL
Match: A0A1S4EU64 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo OX=3656 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.26e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL
Match: A0A6M8Y6K2 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. agrestis OX=217619 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.26e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL
Match: A0A4Y5RD72 (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis hystrix OX=396994 GN=ndhA PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.26e-11
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 52
           IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG
Sbjct: 116 IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 149

[Close]

BLAST of CsGy4G009980 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 57.4 bits (137), Expect = 6.6e-09
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 19  IPFGYRLVLADLPIGVFLWIAISSVAPIGLLMSG 53
           IPF   LVLADL IG+FLWIAISS+APIGLLMSG
Sbjct: 116 IPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSG 149

The following BLAST results are available for this feature:

BLAST of CsGy4G009980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD36	2.3e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0A390	2.6e-10	94.12	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Coffea arabica OX=134...	[more]
Q06GU1	2.6e-10	94.12	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Drimys granadensis OX...	[more]
Q0G9G4	2.6e-10	94.12	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Liriodendron tulipife...	[more]
Q09FZ1	2.6e-10	94.12	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Platanus occidentalis...	[more]

BLAST of CsGy4G009980 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_201356289.1	7.44e-11	94.12	NADH-quinone oxidoreductase subunit H, partial [Salmonella enterica] >MBK5591059...	[more]
YP_247655.1	8.70e-11	100.00	NADH dehydrogenase subunit 1 [Cucumis sativus] >CAJ00814.1 NADH dehydrogenase su...	[more]
YP_009004096.1	8.79e-11	100.00	NADH-plastoquinone oxidoreductase subunit 1 [Cucumis hystrix] >Q2QD36.1 RecName:...	[more]
QCY72897.1	8.79e-11	100.00	NdhA [Cucumis hystrix]	[more]
YP_004841840.1	8.79e-11	100.00	NADH-plastoquinone oxidoreductase subunit 1 [Cucumis melo subsp. melo] >YP_00986...	[more]

BLAST of CsGy4G009980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KGA1	4.26e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus var. ...	[more]
A0A1X9Q1Y4	4.26e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis sativus OX=36...	[more]
A0A1S4EU64	4.26e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A6M8Y6K2	4.26e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis melo subsp. a...	[more]
A0A4Y5RD72	4.26e-11	100.00	NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cucumis hystrix OX=39...	[more]

BLAST of CsGy4G009980 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01100.1	6.6e-09	82.35	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 18..60 e-value: 7.8E-5 score: 22.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009980.1	CsGy4G009980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding