CsGy4G009410 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G009410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	biogenesis of lysosome-related organelles complex 1 subunit 2
Location	Gy14Chr4: 7798717 .. 7800852 (-)
RNA-Seq Expression	CsGy4G009410
Synteny	CsGy4G009410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGACCTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGTGTGTAATCTTCCAAACCCCTAATTCTCTCTGTTTCATCATTTTGTATAGCTGAATATGTCAATTAGGTCTCTCTGTCTGATTTGATTTTGCCCTTTCGTCGATGTTGTTGATTTATTCTCACAGAGAAGTGGCTCCGGCTTTGTAAGGTTTGGGAAATCAATTGTCCATGTTTTAGGGTTTGACCAATGATTTAGTAGTTGAAACCTTGATTGATATAGGATCAATCTTTGATGTTCTTAAGCCCTCCAAGGAGAAATTAAGGAAGAGAGACTATCAAACGTTTACACCGGTAAAAATCATTGAAAACACCAGATCCATAATTTGTTATCAAAAAATGAAAATGTGTCACTGACGATCAGTGACATAGAGACCAAAACGAGACCGATTGATTGCAAGCTAAAGATATTTAGTTTGTTTTTTGTCATCCTTGAATGGGTGCACCACAAAGAGGGAAGATAAGGAGAGAAAATATTTTCAGACCTATAACCAAATTCCATCCTGAAGACGAAGACCAAAATTATTCAGAATTCCATTGGAATTTTTAGTTCCTTGACCACCTCCGAGAAAAAGTTGTATGTAGCTCCCCATCGATAAGCACGACAACCTTGTCCTCTTATTTTGCCTTTTATTTTTAGGGTTATGGGAGAACTGAGACCACCCATGAATTCAGCGACAAATTCGCTATTTCTGTATTGATTTCCTCATCCCCTTATCCTCGGTTTCCTCTGTCACCTTATCAGTTCCCTCACTTAAGCCCTCTACAATGATATTTAATTCTTGTCTTTTGCAGCGGTGACCTGGCCTGAATTTCTCGTCTCACCGGAAAAATAGTCCCTTTTCCTTCTTAATTTTGATTTCGTTGTCGGTCATTCAGCGGTACGATTAAGCCATCAGATTTTTCACACCAGAATCGTGAGGAGAAGTAATTGTTGTGGATGACAAAGAAGAATTACGGCTAGGGTTAATCGTTATGGGTCTTGACGTTGCGACCCGTTTTGTTCCTTTTGACCTGATTTGATTGCTCGATCTGTTCGGCCCACTACTCAGATATTTTATTTGTCATACTCGTTCCACTGGTTGTAATAAGGGAACTTCCCATTAATAAATGGCTTGGAAGTCATGTGTTCAATTCGTGGTGGTCACTTAATTTGGATTATCCTGTATAATTAGTTGAGATGCGCATAAGTTGACTTGGATACTCACGGATATAAGAAAAATACTAGGTAATTTGGATGAAGTGAACAGTTGATAGTTTTCTTTGTTGTACTGTTGTTTGGATGGTCAATGGATTATTTTCTTGATTTTTTAACCTTACGGGCCTAATTACGGTCTGTTAAAGAGTTTTACATCAATAACTTCAGTCTATCCTTGTATATAATAAGGTAGCTGCTTGTATTTTGACATTTTTGTGATCTTCAATAAAATCTCCTCACTGTTTTACATCATTGATTGTGTTTGGCGAAACCAATATAAGCCATTCGCCCTCTATCTATCTGGCTTTGAGTAGGCATTTCACTCTTTCACTATTTTCTGTTCTACTTCTTTGTAATTCCAAAGGACCTTTTAATTCTCGTGTAGTAACTAGTGTTATCAAAACCTGAAAATGTATGTTAATATTTCATATCTTATTATGTTAACAATGATAAAACTTGAGGTTTGCTTTACTGATCAATGAATCAAAGAGATTTGGGAATCAGCTTTCAAAGCCATATGTTTGGGATGTTTTTCTGAAAATTGAAGGTGGGTTTGTTTTGTTTTCTCATATAGGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAA

mRNA sequence

ATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGACCTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAA

Coding sequence (CDS)

ATGGCCCAGAAAGAGGAGCGATTACCGAACAGAGACGACCTCGCCGAGTCGCTTAATGAATTCTTCACCAGCGTGTCGGAAATGATCAAATCGGACCTTCTTGGATCAAGCAATCAGCTGGAACTTTTAGAGAGAATGAACTTGAGGGTGGCTGAAGAGTACAAAGGTTTTGGGGATGTGGCTTCTGGAATGAGGGTTTTTGTGGAGCAGTTGAAGTCAAAGAGTGGTGGGTTTGACGAGTATATAAACCAAATTGAGAAGATAGAGCATCAGGTGACCGAATTTGAAGCTGTAATTTCAATGCTTGATAAGCATGTTTCCATGTTGGAGTCTAAAGTGTTGTCTGTTTGTCAAAACACGCCTTAA

Protein sequence

MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNTP*

Homology

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BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot
Match: F4K657 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana OX=3702 GN=BLOS2 PE=1 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.0e-33
Identity = 69/104 (66.35%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 10  NRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVE 69
           +RDDLAESL   FTSVS M+KS+L G++N L+LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 70  QLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKV 114
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

[Close]

BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot
Match: Q54Y67 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium discoideum OX=44689 GN=bloc1s2 PE=3 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 38/109 (34.86%), Postives = 61/109 (55.96%), Query Frame = 0


Query: 8   LPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVF 67
           LP  +DL  S  E FT VS  IKS+L  + +   LL +MN   + +Y+   +V  G+ VF
Sbjct: 72  LPVTEDLQNSTKEMFTKVSSYIKSELATTVSDYNLLIQMNNITSSKYQDMTNVTKGLSVF 131

Query: 68  VEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSV 117
           +  LK K   F  Y ++I +++  VT+ E  + +LD++   LE KV ++
Sbjct: 132 MGDLKIKYEEFQPYFDKINELDKNVTDLEKTVQLLDEYTKRLEQKVKNI 180

[Close]

BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot
Match: Q6QNY1 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX=9606 GN=BLOC1S2 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 31/109 (28.44%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   D+ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot
Match: Q4R7C8 (Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicularis OX=9541 GN=BLOC1S2 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.5e-06
Identity = 31/109 (28.44%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   D+ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADITELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot
Match: Q32WR5 (Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegicus OX=10116 GN=Bloc1s2 PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 4.3e-06
Identity = 31/109 (28.44%), Postives = 52/109 (47.71%), Query Frame = 0


Query: 4   KEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASG 63
           +E + P   D+ E   + F+ ++  +  +L  +S   +LLE MN   + +Y    D+A  
Sbjct: 27  EEAKEPAEADINELCRDMFSKMATYLTGELTATSEDYKLLENMNKLTSLKYLEMKDIAIN 86

Query: 64  MRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESK 113
           +   ++ L  K  G   Y++QI  IE QV   E     LD +   LE+K
Sbjct: 87  ISRNLKDLNQKYAGLQPYLDQINVIEEQVAALEQAAYKLDAYSKKLEAK 135

[Close]

BLAST of CsGy4G009410 vs. NCBI nr
Match: XP_004137147.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] >KGN53763.1 hypothetical protein Csa_014951 [Cucumis sativus])

HSP 1 Score: 235 bits (600), Expect = 6.48e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

[Close]

BLAST of CsGy4G009410 vs. NCBI nr
Match: XP_008455567.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis melo])

HSP 1 Score: 228 bits (582), Expect = 3.61e-75
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

[Close]

BLAST of CsGy4G009410 vs. NCBI nr
Match: XP_038880795.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida])

HSP 1 Score: 225 bits (574), Expect = 5.99e-74
Identity = 116/121 (95.87%), Postives = 119/121 (98.35%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEE+ PNRD+LAESLNEFFTSVSEMIKSDLLGSSNQL LLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEEQPPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLALLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

[Close]

BLAST of CsGy4G009410 vs. NCBI nr
Match: XP_022949044.1 (biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschata] >XP_022997803.1 biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita maxima])

HSP 1 Score: 210 bits (534), Expect = 8.05e-68
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEER-LPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE+ LPN D+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CsGy4G009410 vs. NCBI nr
Match: KAG6607085.1 (Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 209 bits (532), Expect = 1.63e-67
Identity = 108/121 (89.26%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEER-LPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE+ LPN D+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MN+RVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNIRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL
Match: A0A0A0KW18 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1)

HSP 1 Score: 235 bits (600), Expect = 3.14e-78
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV
Sbjct: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

[Close]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL
Match: A0A1S3C0T0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495715 PE=3 SV=1)

HSP 1 Score: 228 bits (582), Expect = 1.75e-75
Identity = 117/121 (96.69%), Postives = 120/121 (99.17%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MAQKEERLPNRD+LAESLNEFFTSVSEMIKSDLLGSSNQLELLERMN RVAEEYKG+GDV
Sbjct: 1   MAQKEERLPNRDELAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNSRVAEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120
           ASGMRVFVEQLKSKSGGFDEYI+QIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT
Sbjct: 61  ASGMRVFVEQLKSKSGGFDEYIHQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQNT 120

[Close]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL
Match: A0A6J1KEZ0 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111492648 PE=3 SV=1)

HSP 1 Score: 210 bits (534), Expect = 3.90e-68
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEER-LPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE+ LPN D+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL
Match: A0A6J1GBP4 (biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111452507 PE=3 SV=1)

HSP 1 Score: 210 bits (534), Expect = 3.90e-68
Identity = 109/121 (90.08%), Postives = 117/121 (96.69%), Query Frame = 0


Query: 1   MAQKEER-LPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGD 60
           MA+KEE+ LPN D+LAESLNEFFTSVSEMIKSDLLGSSNQL LLE+MNLRVAEEYKG GD
Sbjct: 1   MAEKEEQQLPNSDELAESLNEFFTSVSEMIKSDLLGSSNQLALLEKMNLRVAEEYKGLGD 60

Query: 61  VASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVCQN 120
           VASGMRVFVEQLK+KSGGFDEYINQIEKIE+QVTEFEAVISMLDKH+SMLESKVLSVCQN
Sbjct: 61  VASGMRVFVEQLKAKSGGFDEYINQIEKIENQVTEFEAVISMLDKHISMLESKVLSVCQN 120

[Close]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL
Match: W9R9H2 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018142 PE=3 SV=1)

HSP 1 Score: 169 bits (429), Expect = 3.93e-52
Identity = 84/117 (71.79%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 1   MAQKEERLPNRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDV 60
           MA+K ++ P+RD+LAESLN+ FTSV  M+KS+L G++NQLELLE+MNLRV EEYKG+GDV
Sbjct: 1   MAEKTDQQPSRDELAESLNDLFTSVFAMVKSELQGTNNQLELLEKMNLRVGEEYKGYGDV 60

Query: 61  ASGMRVFVEQLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKVLSVC 117
           ASG+RVFVEQLKSKSG FDEY  +IE I+ QVTEFEAVISMLD++VS LESK+ S C
Sbjct: 61  ASGLRVFVEQLKSKSGSFDEYAQKIETIDQQVTEFEAVISMLDRYVSALESKLQSAC 117

[Close]

BLAST of CsGy4G009410 vs. TAIR 10
Match: AT5G49550.1 (Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction with BLOS1. )

HSP 1 Score: 141.4 bits (355), Expect = 5.0e-34
Identity = 69/104 (66.35%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 10  NRDDLAESLNEFFTSVSEMIKSDLLGSSNQLELLERMNLRVAEEYKGFGDVASGMRVFVE 69
           +RDDLAESL   FTSVS M+KS+L G++N L+LLE+MNLRVA EY   GDVA+G+RVF E
Sbjct: 4   SRDDLAESLQNLFTSVSSMVKSELQGTNNHLDLLEKMNLRVASEYDDMGDVAAGLRVFAE 63

Query: 70  QLKSKSGGFDEYINQIEKIEHQVTEFEAVISMLDKHVSMLESKV 114
           Q+KSKSGG DE++ Q++ IE QV+EFEAVIS+LD++VS+LESK+
Sbjct: 64  QMKSKSGGLDEFVGQMDAIEKQVSEFEAVISVLDRYVSVLESKI 107

The following BLAST results are available for this feature:

BLAST of CsGy4G009410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K657	7.0e-33	66.35	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis tha...	[more]
Q54Y67	1.2e-11	34.86	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Dictyostelium d...	[more]
Q6QNY1	2.5e-06	28.44	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Homo sapiens OX...	[more]
Q4R7C8	2.5e-06	28.44	Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Macaca fascicul...	[more]
Q32WR5	4.3e-06	28.44	Biogenesis of lysosome-related organelles complex-1 subunit 2 OS=Rattus norvegic...	[more]

BLAST of CsGy4G009410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137147.1	6.48e-78	100.00	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumis sativus] ...	[more]
XP_008455567.1	3.61e-75	96.69	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucumi...	[more]
XP_038880795.1	5.99e-74	95.87	biogenesis of lysosome-related organelles complex 1 subunit 2 [Benincasa hispida...	[more]
XP_022949044.1	8.05e-68	90.08	biogenesis of lysosome-related organelles complex 1 subunit 2 [Cucurbita moschat...	[more]
KAG6607085.1	1.63e-67	89.26	Biogenesis of lysosome-related organelles complex 1 subunit 2, partial [Cucurbit...	[more]

BLAST of CsGy4G009410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW18	3.14e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G123360 PE=3 SV=1	[more]
A0A1S3C0T0	1.75e-75	96.69	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucumis melo OX...	[more]
A0A6J1KEZ0	3.90e-68	90.08	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita maxim...	[more]
A0A6J1GBP4	3.90e-68	90.08	biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Cucurbita mosch...	[more]
W9R9H2	3.93e-52	71.79	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_018142 PE=3 SV=1	[more]

BLAST of CsGy4G009410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49550.1	5.0e-34	66.35	Putative homolog of mammalian BLOC-1 Subunit 2. Protein - protein interaction wi...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 78..98
None	No IPR available	PANTHER	PTHR47882	BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 2	coord: 6..120
IPR019269	Biogenesis of lysosome-related organelles complex-1, subunit 2	PFAM	PF10046	BLOC1_2	coord: 20..113 e-value: 4.5E-26 score: 91.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G009410.2	CsGy4G009410.2	mRNA