CsGy4G008165 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G008165
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionReverse transcriptase domain-containing protein
LocationGy14Chr4: 6133587 .. 6133880 (+)
RNA-Seq ExpressionCsGy4G008165
SyntenyCsGy4G008165
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCATTCTCCAATACGTTGATGACACTTTCCTGTTTTGAAAAGATGATATTAGTATGTTGGATGCATTAAGAAGAATCATTGAGCAAATTGAGTGGTGTTCAGGCCAAAAGGTCAATTGGGAAAAGTTTGCACTGTGCGGAGTGAATATGTCTACAACTTCTCAATTGAACTAAAAGGTGGGTTCTTTACTTTTTTATATATTGGTATCCTTCTTGGATGGTTATCCAAGAAAGATTTATTTTTGCTAGCAATAAATTCAAAAGAAGTTGGATAGATGGTTGCGAATTGCGATT

mRNA sequence

CCCATTCTCCAATACGTTGATGACACTTTCCTGTTTTGAAAAGATGATATTAGTATGTTGGATGCATTAAGAAGAATCATTGAGCAAATTGAGTGGTGTTCAGGCCAAAAGGTCAATTGGGAAAAGTTTGCACTGTGCGGAGTGAATATGTCTACAACTTCTCAATTGAACTAAAAGGTGGGTTCTTTACTTTTTTATATATTGGTATCCTTCTTGGATGGTTATCCAAGAAAGATTTATTTTTGCTAGCAATAAATTCAAAAGAAGTTGGATAGATGGTTGCGAATTGCGATT

Coding sequence (CDS)

ATGTTGGATGCATTAAGAAGAATCATTGAGCAAATTGAGTGGTGTTCAGGCCAAAAGGTCAATTGGGAAAAGTTTGCACTGTGCGGAGTGAATATGTCTACAACTTCTCAATTGAACTAA

Protein sequence

MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN*
Homology
BLAST of CsGy4G008165 vs. NCBI nr
Match: TYK01565.1 (hypothetical protein E5676_scaffold451G001420 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 4.07e-07
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN 39
           M+D LR+ ++  EWCSGQKVNW+K ALCG+N++ +  L+
Sbjct: 190 MMDNLRQTLDFFEWCSGQKVNWDKSALCGINVAESELLS 228

BLAST of CsGy4G008165 vs. NCBI nr
Match: KAA0048202.1 (hypothetical protein E6C27_scaffold63G001130 [Cucumis melo var. makuwa] >TYK08055.1 hypothetical protein E5676_scaffold265G002030 [Cucumis melo var. makuwa])

HSP 1 Score: 52.8 bits (125), Expect = 4.23e-07
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 1  MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN 39
          ++D LR+ +E  EWCS QKVNW+K ALCG+N++ +  L+
Sbjct: 58 LMDNLRQTLELFEWCSSQKVNWDKSALCGINVAESELLS 96

BLAST of CsGy4G008165 vs. NCBI nr
Match: XP_038879260.1 (uncharacterized mitochondrial protein AtMg01250-like [Benincasa hispida])

HSP 1 Score: 48.5 bits (114), Expect = 1.87e-05
Identity = 21/32 (65.62%), Postives = 24/32 (75.00%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNM 32
           ML  L+  IE  EWCSGQKVNWEK AL G+N+
Sbjct: 89  MLLKLKEAIELFEWCSGQKVNWEKSALSGINI 120

BLAST of CsGy4G008165 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 48.1 bits (113), Expect = 9.46e-05
Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNM------STTSQLN 39
           ML  L++ +E  +WCSGQKVNWEK AL G+N+      ST + LN
Sbjct: 424 MLAKLKQTVEFFKWCSGQKVNWEKSALYGINVDENELISTAASLN 468

BLAST of CsGy4G008165 vs. NCBI nr
Match: XP_038880332.1 (uncharacterized protein LOC120071973 [Benincasa hispida])

HSP 1 Score: 48.1 bits (113), Expect = 9.47e-05
Identity = 21/39 (53.85%), Postives = 27/39 (69.23%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN 39
           M++ LR I E  EWCS QKVNWEK A+CG+N+     L+
Sbjct: 110 MIENLRTI-EIFEWCSSQKVNWEKSAICGINIEENKMLS 147

BLAST of CsGy4G008165 vs. ExPASy TrEMBL
Match: A0A5D3BQV1 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G001420 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.97e-07
Identity = 21/39 (53.85%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN 39
           M+D LR+ ++  EWCSGQKVNW+K ALCG+N++ +  L+
Sbjct: 190 MMDNLRQTLDFFEWCSGQKVNWDKSALCGINVAESELLS 228

BLAST of CsGy4G008165 vs. ExPASy TrEMBL
Match: A0A5A7TXF7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002030 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.05e-07
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0

Query: 1  MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMSTTSQLN 39
          ++D LR+ +E  EWCS QKVNW+K ALCG+N++ +  L+
Sbjct: 58 LMDNLRQTLELFEWCSSQKVNWDKSALCGINVAESELLS 96

BLAST of CsGy4G008165 vs. ExPASy TrEMBL
Match: A0A5D3C5A3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00260 PE=4 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 8.59e-05
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNMS 33
           ML  L+  +E  EWCSGQK+NWEK A  GVN+S
Sbjct: 356 MLVKLKDTLELFEWCSGQKINWEKSAFSGVNVS 388

BLAST of CsGy4G008165 vs. ExPASy TrEMBL
Match: A0A5D3C786 (Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001010 PE=4 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.37e-04
Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 0

Query: 1  MLDALRRIIEQIEWCSGQKVNWEKFALCGVN------MSTTSQLN 39
          ML+ LR+ +   E CSGQK+ WEK ++CG+N      +STT+ LN
Sbjct: 20 MLENLRKTLFVFELCSGQKIGWEKSSICGINVEDSQILSTTNNLN 64

BLAST of CsGy4G008165 vs. ExPASy TrEMBL
Match: A0A5D3DC03 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00680 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.61e-04
Identity = 19/32 (59.38%), Postives = 23/32 (71.88%), Query Frame = 0

Query: 1   MLDALRRIIEQIEWCSGQKVNWEKFALCGVNM 32
           ML  L+  I   EWCSG ++NWEK ALCGVN+
Sbjct: 247 MLMKLKDTIALFEWCSGPRINWEKSALCGVNL 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
TYK01565.14.07e-0753.85hypothetical protein E5676_scaffold451G001420 [Cucumis melo var. makuwa][more]
KAA0048202.14.23e-0751.28hypothetical protein E6C27_scaffold63G001130 [Cucumis melo var. makuwa] >TYK0805... [more]
XP_038879260.11.87e-0565.63uncharacterized mitochondrial protein AtMg01250-like [Benincasa hispida][more]
XP_038889274.19.46e-0551.11uncharacterized protein LOC120079176 [Benincasa hispida][more]
XP_038880332.19.47e-0553.85uncharacterized protein LOC120071973 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
A0A5D3BQV11.97e-0753.85Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
A0A5A7TXF72.05e-0751.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C5A38.59e-0560.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7861.37e-0446.67Putative ribonuclease H protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5D3DC031.61e-0459.38Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G008165.1CsGy4G008165.1mRNA