CsGy4G006820 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G006820
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 4929530 .. 4929887 (-)
RNA-Seq ExpressionCsGy4G006820
SyntenyCsGy4G006820
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGGTACGGAGTTGCTCTAACTTTCGAGAAAGAGCTAGTTAATCTAATTGTTGTGTTTTTTTATGATCGTTGTTGTAGATTTTCCTTGCTAGTTTAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

mRNA sequence

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Coding sequence (CDS)

ATGTGTGGGCGAATTGGATCCCGCCTTGCATCAACTGAATCGGAAACCGTGGTGAAGATTGCTTCGGTTCTTGCCTTCCTCCAGATCTCAGATTTATCTACATGTACGACATCAATCAATCTGAAAACTGCTCAATCGATCTGCTCCTCTGTGTATCCGAATCTTGATTCTTGTTCTCCTCTGTCGAAGACAAAGGAGCATAAGCTTGATTCTCAGTTGAGTTTAATGATTTTGTGTTTCATAAAGCCAATTGATAGTCATTGA

Protein sequence

MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSPLSKTKEHKLDSQLSLMILCFIKPIDSH*
Homology
[Close]
BLAST of CsGy4G006820 vs. NCBI nr
Match: KAE8649222.1 (hypothetical protein Csa_015334 [Cucumis sativus])

HSP 1 Score: 168 bits (426), Expect = 1.90e-52
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
          MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 1  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60

Query: 61 LSKTKEHKLDSQLSLMILCFIKPIDSH 87
          LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 61 LSKTKEHKLDSQLSLMILCFIKPIDSH 87

[Close]
BLAST of CsGy4G006820 vs. NCBI nr
Match: KAG6600427.1 (hypothetical protein SDJN03_05660, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 2.45e-05
Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 0 

Query: 1  MCGRIGSRLASTESETVVKIASVLAFLQIS 30
          M GRIGSRLASTESETVVKIA +L FLQIS
Sbjct: 1  MFGRIGSRLASTESETVVKIAWILTFLQIS 30

[Close]
BLAST of CsGy4G006820 vs. ExPASy TrEMBL
Match: A0A0A0KV90 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 1.13e-51
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1   MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 60
           MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP
Sbjct: 81  MCGRIGSRLASTESETVVKIASVLAFLQISDLSTCTTSINLKTAQSICSSVYPNLDSCSP 140

Query: 61  LSKTKEHKLDSQLSLMILCFIKPIDSH 87
           LSKTKEHKLDSQLSLMILCFIKPIDSH
Sbjct: 141 LSKTKEHKLDSQLSLMILCFIKPIDSH 167

The following BLAST results are available for this feature:
BLAST of CsGy4G006820 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8649222.11.90e-52100.00hypothetical protein Csa_015334 [Cucumis sativus][more]
KAG6600427.12.45e-0586.67hypothetical protein SDJN03_05660, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CsGy4G006820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV901.13e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056540 PE=4 SV=1[more]
BLAST of CsGy4G006820 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G006820.2CsGy4G006820.2mRNA