CsGy4G006305 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G006305
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDeoxyhypusine synthase
LocationGy14Chr4: 4556551 .. 4557144 (+)
RNA-Seq ExpressionCsGy4G006305
SyntenyCsGy4G006305
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCTCTCTTTCTTTTCTTTTCTCACCTCAGTCACATTCTCAACTCCAAATTCTCCGGCCAACAACCGACGACGGGGGTAGCGATATCATAGTGTTCTGCTGGTATCAATGGGCAATTGTGTTGAAGTATTGTCGAGGCAGCGAGAAGAAGACGGGACGACGACGACGACGTCAACGAGGGAGATGGAAGAGAGAGAAAAGAAAGGAGGAATGAGAATAAAAGTAGTGTTGAGAAAAGAAGAACTGGAATGGCTAACGGAGCAAATTAAGGAGAAAGGAGGGAAATGTTTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAGAAAAAACAGTCATGAATTGTAGTATTCAATACAATGTTTCTTGGAAACCTTCTTTGGAAAGTATTATGGAATGTCCAGAAATTCCCGATCACATGTTCAGATAGCTAGAAACAGCAACTCTAGTTGGTAATTAAATCAATTGAAATACATATATATTATTGTTTTGGAGATGAAGGTGTTTCTTTTTCATCCACCTCACTCGTCTCTTTCTCTGTTACCTTTCTCTTATCAAGTAGATTCTTTTTCTAAGCCAGGTCTGTAATTAT

mRNA sequence

CTTCTCTCTTTCTTTTCTTTTCTCACCTCAGTCACATTCTCAACTCCAAATTCTCCGGCCAACAACCGACGACGGGGGTAGCGATATCATAGTGTTCTGCTGGTATCAATGGGCAATTGTGTTGAAGTATTGTCGAGGCAGCGAGAAGAAGACGGGACGACGACGACGACGTCAACGAGGGAGATGGAAGAGAGAGAAAAGAAAGGAGGAATGAGAATAAAAGTAGTGTTGAGAAAAGAAGAACTGGAATGGCTAACGGAGCAAATTAAGGAGAAAGGAGGGAAATGTTTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAGAAAAAACAGTCATGAATTGTAGTATTCAATACAATGTTTCTTGGAAACCTTCTTTGGAAAGTATTATGGAATGTCCAGAAATTCCCGATCACATGTTCAGATAGCTAGAAACAGCAACTCTAGTTGGTAATTAAATCAATTGAAATACATATATATTATTGTTTTGGAGATGAAGGTGTTTCTTTTTCATCCACCTCACTCGTCTCTTTCTCTGTTACCTTTCTCTTATCAAGTAGATTCTTTTTCTAAGCCAGGTCTGTAATTAT

Coding sequence (CDS)

ATGGGCAATTGTGTTGAAGTATTGTCGAGGCAGCGAGAAGAAGACGGGACGACGACGACGACGTCAACGAGGGAGATGGAAGAGAGAGAAAAGAAAGGAGGAATGAGAATAAAAGTAGTGTTGAGAAAAGAAGAACTGGAATGGCTAACGGAGCAAATTAAGGAGAAAGGAGGGAAATGTTTAGAAGAATTGTTGGAAGAAATAGAAAGAGGAAGAAGAGAAAAAACAGTCATGAATTGTAGTATTCAATACAATGTTTCTTGGAAACCTTCTTTGGAAAGTATTATGGAATGTCCAGAAATTCCCGATCACATGTTCAGATAG

Protein sequence

MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKCLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR*
Homology
BLAST of CsGy4G006305 vs. NCBI nr
Match: KGN53406.1 (hypothetical protein Csa_015211 [Cucumis sativus])

HSP 1 Score: 210 bits (535), Expect = 1.90e-68
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR 107
           LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR 107

BLAST of CsGy4G006305 vs. NCBI nr
Match: XP_023543788.1 (uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127 bits (319), Expect = 1.42e-35
Identity = 69/105 (65.71%), Postives = 84/105 (80.00%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVEVLSR+REE+GT TTT+T  ME+ E+KGG+RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRRREEEGTMTTTTTTTMEKEERKGGVRIKVVLTKEELQWLMEQVQERGGKG 60

Query: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105
           LEELL EIER RR+       +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLGEIERRRRK-------VDEDGSWRPSLESIMEVPEVPDRM 98

BLAST of CsGy4G006305 vs. NCBI nr
Match: XP_022942038.1 (uncharacterized protein LOC111447226 [Cucurbita moschata])

HSP 1 Score: 117 bits (293), Expect = 1.29e-31
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVEVLSR+REE+  TTT +T  ME+ E+KG +RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGGKG 60

Query: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105
           LEELL EIE GRR+K      +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVPDRM 98

BLAST of CsGy4G006305 vs. NCBI nr
Match: KAG6600517.1 (hypothetical protein SDJN03_05750, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (288), Expect = 7.66e-31
Identity = 68/106 (64.15%), Postives = 83/106 (78.30%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGG-MRIKVVLRKEELEWLTEQIKEKGGK 60
           MGNCVEVLSR+ EE+ TTTT +T  ME+ E+KGG +RIKVVL KEEL+WL EQ++E+GGK
Sbjct: 1   MGNCVEVLSRRSEEEETTTTGTTTMMEKEERKGGGVRIKVVLTKEELQWLMEQVQERGGK 60

Query: 61  CLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105
            LEELL EIE GRR+K      +  + SW+PSLESIME PE+PD M
Sbjct: 61  GLEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVPDRM 99

BLAST of CsGy4G006305 vs. NCBI nr
Match: KAG7031156.1 (hypothetical protein SDJN02_05196, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111 bits (278), Expect = 2.54e-29
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGG-MRIKVVLRKEELEWLTEQIKEKGGK 60
           MGNCVEVLSR+ EE+ TTTT +T  ME+ E+KGG +RIKVVL KEEL+WL EQ++E+GGK
Sbjct: 1   MGNCVEVLSRRSEEEETTTTGTTTMMEKEERKGGGVRIKVVLTKEELQWLMEQVQERGGK 60

Query: 61  CLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105
            LEELL EIE GRR+K      +  + SW+PSLESIME PE+ D M
Sbjct: 61  GLEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVLDRM 99

BLAST of CsGy4G006305 vs. ExPASy TrEMBL
Match: A0A0A0KZU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 9.20e-69
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC
Sbjct: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60

Query: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR 107
           LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR
Sbjct: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHMFR 107

BLAST of CsGy4G006305 vs. ExPASy TrEMBL
Match: A0A6J1FTR3 (uncharacterized protein LOC111447226 OS=Cucurbita moschata OX=3662 GN=LOC111447226 PE=4 SV=1)

HSP 1 Score: 117 bits (293), Expect = 6.25e-32
Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVEVLSR+REE+  TTT +T  ME+ E+KG +RIKVVL KEEL+WL EQ++E+GGK 
Sbjct: 1   MGNCVEVLSRRREEEEMTTTATTTIMEKEERKGRVRIKVVLTKEELQWLMEQVQERGGKG 60

Query: 61  LEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEIPDHM 105
           LEELL EIE GRR+K      +  + SW+PSLESIME PE+PD M
Sbjct: 61  LEELLGEIE-GRRKK------VNEDGSWRPSLESIMEVPEVPDRM 98

BLAST of CsGy4G006305 vs. ExPASy TrEMBL
Match: A0A6J1C443 (uncharacterized protein LOC111008308 OS=Momordica charantia OX=3673 GN=LOC111008308 PE=4 SV=1)

HSP 1 Score: 105 bits (262), Expect = 3.23e-27
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKGGMRIKVVLRKEELEWLTEQIKEKGGKC 60
           MGNCVE + +  E           E E++E KGGMRIKVVL KEELEWL E I E+GG+ 
Sbjct: 1   MGNCVEAVWKPEE---------AAEEEKKEMKGGMRIKVVLTKEELEWLMEHINERGGRN 60

Query: 61  LEELLEEI--ERGRREKTVMNC-SIQYNVS--WKPSLESIMECPEIPDHMFR 107
           LE+LLEEI  ERGRR + V++  ++ +N S  WKPSLESI+ECPE+PDHM R
Sbjct: 61  LEDLLEEIQIERGRRSRKVISREALDFNTSASWKPSLESIVECPELPDHMQR 103

BLAST of CsGy4G006305 vs. ExPASy TrEMBL
Match: A0A438J5K9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_015680 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.20e-17
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKG---GMRIKVVLRKEELEWLTEQIKEKG 60
           MGNC+E   R+R E         ++  E EKKG   G+R+K+VL KEELEW+  Q+K+KG
Sbjct: 1   MGNCMETC-RERNEAEEEERNQEKQGGEEEKKGSGYGVRVKIVLTKEELEWMMFQLKDKG 60

Query: 61  GKCLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEI 101
           GK LE++L EIERGR         ++    WKPSLESIME PE+
Sbjct: 61  GKSLEDVLREIERGRSSAATAG-KVE---GWKPSLESIMESPEV 99

BLAST of CsGy4G006305 vs. ExPASy TrEMBL
Match: F6HU23 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01450 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.20e-17
Identity = 51/104 (49.04%), Postives = 66/104 (63.46%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREMEEREKKG---GMRIKVVLRKEELEWLTEQIKEKG 60
           MGNC+E   R+R E         ++  E EKKG   G+R+K+VL KEELEW+  Q+K+KG
Sbjct: 1   MGNCMETC-RERHEAEEEERNQEKQGGEEEKKGSGYGVRVKIVLTKEELEWMMFQLKDKG 60

Query: 61  GKCLEELLEEIERGRREKTVMNCSIQYNVSWKPSLESIMECPEI 101
           GK LE++L EIERGR         ++    WKPSLESIME PE+
Sbjct: 61  GKSLEDVLREIERGRSSAATAG-KVE---GWKPSLESIMESPEV 99

BLAST of CsGy4G006305 vs. TAIR 10
Match: AT1G64405.1 (unknown protein; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 3.3e-05
Identity = 32/115 (27.83%), Postives = 61/115 (53.04%), Query Frame = 0

Query: 1   MGNCVEVLSRQREEDGTTTTTSTREM-------EEREKKGGMRIKVVLRKEELE-WLTEQ 60
           MGNC+E   +   E+G    T   +        +  +  GGM++K+VL + EL+ +L + 
Sbjct: 1   MGNCMERWMQGEGEEGKIEVTERAKESFKLDGDDNEDGHGGMKVKIVLTRHELDMFLLQM 60

Query: 61  IKEKGGKCL--EELLEEIERG--RREKTVMNCSIQYNVSWKPSLESIMECPEIPD 104
            +   G  +  ++++ E+E+   R        S   +++W+P+LESI+ECPE+ +
Sbjct: 61  NRSHDGNLMITKDVMVELEKRIIRASSFSSLSSSPSSIAWEPALESILECPEVQE 115

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN53406.11.90e-68100.00hypothetical protein Csa_015211 [Cucumis sativus][more]
XP_023543788.11.42e-3565.71uncharacterized protein LOC111803552 [Cucurbita pepo subsp. pepo][more]
XP_022942038.11.29e-3163.81uncharacterized protein LOC111447226 [Cucurbita moschata][more]
KAG6600517.17.66e-3164.15hypothetical protein SDJN03_05750, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7031156.12.54e-2963.21hypothetical protein SDJN02_05196, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A0A0KZU99.20e-69100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052070 PE=4 SV=1[more]
A0A6J1FTR36.25e-3263.81uncharacterized protein LOC111447226 OS=Cucurbita moschata OX=3662 GN=LOC1114472... [more]
A0A6J1C4433.23e-2757.14uncharacterized protein LOC111008308 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A438J5K91.20e-1749.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_015680 PE=4 SV=1[more]
F6HU231.20e-1749.04Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01450 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
AT1G64405.13.3e-0527.83unknown protein; Has 13 Blast hits to 13 proteins in 7 species: Archae - 0; Bact... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 8..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availablePANTHERPTHR35704:SF1OS02G0254600 PROTEINcoord: 1..105
NoneNo IPR availablePANTHERPTHR35704OS02G0254600 PROTEINcoord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G006305.1CsGy4G006305.1mRNA