CsGy4G005600 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G005600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein SPIRAL1-like 5
Location	Gy14Chr4: 4004838 .. 4005753 (-)
RNA-Seq Expression	CsGy4G005600
Synteny	CsGy4G005600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCACACTCATAAAGATTATATATATAAATTAACCAACCAAAATTAGGGTTTTAAACTTTCTTTTGTGTTCTTGGTGTAGTAAAGCTGAAGATCAGATCCAGCCACAAATCCAAATATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGTTCCTTAGGTTATCTTTTTGGTAAGGATGATCAACCTAGAAAGCCTCAAGTCTCCAAAGTTGTTCTTCCTCCTCCTTATGGTATTGATCTTAACCCTGATGATCATAATAACAATCCTTCTCCCTCTCCAAAACAACTTGTTTCCAACAATAATTATCCTCGAGCTCACGGCCAAAACTCCGGCAACTTCATAACGGTAATTGTATTATTCTACCTAGATATGGATTTCAAATGAATTCTATTGTTAATCACTTCCTTAATTATTTTGCGTATAAAATTTTGAGTTTAAAATCATTTTCTGAACTTTGAATCAGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGCGATTCGTCGTTAGGGTATCTGTTTGGTGATATCACCAAACAGTGAAATATATGAATGAGTATGTCTTTTGATTTACTCTCTCTAGCTGACTATATATGAAAAAAAATCTAAAGGGGTATGGTTTAGTATGAGTGGTTCTTTTACTAAATAAATGTGTGCAATTATTATGTTTAGTATTTGAAAGGAAACATATGTAGCTTGAATTTGTGTAGCCTATGCCTATATATTTGTGTGTATGTATATATAGTTTGGCGTAGTTTGTACTTGTGTTTATATAGTGATCTATTTGTTAAACAAATCTGATGATTCAGATATCTATGTATTGAAAAATAGCATCATGATGATTGTAGTTCTTTATTGTGTCAATTTCTCAAAAAATGTGAGGACCATATACACCTGAAATTGCTC

mRNA sequence

CTTCACACTCATAAAGATTATATATATAAATTAACCAACCAAAATTAGGGTTTTAAACTTTCTTTTGTGTTCTTGGTGTAGTAAAGCTGAAGATCAGATCCAGCCACAAATCCAAATATCATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGTTCCTTAGGTTATCTTTTTGGTAAGGATGATCAACCTAGAAAGCCTCAAGTCTCCAAAGTTGTTCTTCCTCCTCCTTATGGTATTGATCTTAACCCTGATGATCATAATAACAATCCTTCTCCCTCTCCAAAACAACTTGTTTCCAACAATAATTATCCTCGAGCTCACGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGCGATTCGTCGTTAGGGTATCTGTTTGGTGATATCACCAAACAGTGAAATATATGAATGAGTATGTCTTTTGATTTACTCTCTCTAGCTGACTATATATGAAAAAAAATCTAAAGGGGTATGGTTTAGTATGAGTGGTTCTTTTACTAAATAAATGTGTGCAATTATTATGTTTAGTATTTGAAAGGAAACATATGTAGCTTGAATTTGTGTAGCCTATGCCTATATATTTGTGTGTATGTATATATAGTTTGGCGTAGTTTGTACTTGTGTTTATATAGTGATCTATTTGTTAAACAAATCTGATGATTCAGATATCTATGTATTGAAAAATAGCATCATGATGATTGTAGTTCTTTATTGTGTCAATTTCTCAAAAAATGTGAGGACCATATACACCTGAAATTGCTC

Coding sequence (CDS)

ATGAGTAGAGGTGGAAGCTATGGTGGTGGAAGAAGTTCCTTAGGTTATCTTTTTGGTAAGGATGATCAACCTAGAAAGCCTCAAGTCTCCAAAGTTGTTCTTCCTCCTCCTTATGGTATTGATCTTAACCCTGATGATCATAATAACAATCCTTCTCCCTCTCCAAAACAACTTGTTTCCAACAATAATTATCCTCGAGCTCACGGCCAAAACTCCGGCAACTTCATAACGGATCGTCCATCAACCAAGGTGAAATCTGCTCCGGGTGGCGATTCGTCGTTAGGGTATCTGTTTGGTGATATCACCAAACAGTGA

Protein sequence

MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ*

Homology

[Close]

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot
Match: Q8LGD1 (Protein SPIRAL1-like 5 OS=Arabidopsis thaliana OX=3702 GN=SP1L5 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-27
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQ-PRKPQVSKVVLP-PPYGIDLNPDDHNNNPSPSPKQL 60
           MSRGGS+GGG+SSLGYLFG D++ P+ P       P PPYG+D   +DH  +  P     
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEEDHEADQKPK---- 60

Query: 61  VSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 101
           +SNNNY R  GQNSGNF+TDRP+TKVKS PGG SSLGYLFGD
Sbjct: 61  ISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGD 98

[Close]

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot
Match: Q7Y1L9 (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.2e-18
Identity = 57/114 (50.00%), Postives = 71/114 (62.28%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPR---KPQVSKVVLP-----PPYGIDLNPDDHNNNPS 60
           MSRGGS GGG+SSLGYLFG ++ P+   KP  +    P     P   +    +  +   +
Sbjct: 1   MSRGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPAAAVAAPAEKPSPAKA 60

Query: 61  PSPKQLV-------SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
            + KQ+        SNNNY RA GQN+GNF+TDRPSTKV +APGG SSLGYLFG
Sbjct: 61  DATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFG 114

[Close]

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-17
Identity = 55/116 (47.41%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLV- 60
           M RG S GGG+SSLGYLFG  + P KP ++    P    + ++ D       PSPK +  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAINNAPAPSSETLPISAD-------PSPKHVAA 60

Query: 61  ----------------SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
                           S NNY RA GQN+GNF+TDRPSTKV +APGG SSL YLFG
Sbjct: 61  QTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108

[Close]

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.0e-17
Identity = 56/107 (52.34%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVV--------LPPPYGIDLNPDDHNNNPS 60
           M RG S GGG+SSLGYLFG  + P+   V+K           PP      N  D +    
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVD-SIKQV 60

Query: 61  PSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
           P+     S NNY RA GQN+GNFITDRPSTKV SAPGG SSL YLFG
Sbjct: 61  PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.4e-15
Identity = 50/100 (50.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 1  MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
          M RG S GGG+SSLGYLFG  + P+  +    V  P       P          P  + S
Sbjct: 1  MGRGVSSGGGQSSLGYLFGGGEAPKSAEKPAPVQKPA------PSSSAEKLKEIPAGIQS 60

Query: 61 N--NNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLF 99
          +  NNY RA GQN GNF+TDRPSTKV++APGG SSL YLF
Sbjct: 61 SKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLF 94

[Close]

BLAST of CsGy4G005600 vs. NCBI nr
Match: XP_004146520.1 (protein SPIRAL1-like 5 [Cucumis sativus] >KGN53333.1 hypothetical protein Csa_015032 [Cucumis sativus])

HSP 1 Score: 216 bits (551), Expect = 5.52e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ 104
           NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ
Sbjct: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ 104

[Close]

BLAST of CsGy4G005600 vs. NCBI nr
Match: XP_008452039.1 (PREDICTED: protein SPIRAL1-like 5 [Cucumis melo] >KAA0044824.1 protein SPIRAL1-like 5 [Cucumis melo var. makuwa] >TYK16640.1 protein SPIRAL1-like 5 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (507), Expect = 2.68e-64
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD-HNNNPSPSPKQLV 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD H+NNPSPSPKQLV
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           S NNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 101

[Close]

BLAST of CsGy4G005600 vs. NCBI nr
Match: XP_038883008.1 (protein SPIRAL1-like 5 [Benincasa hispida])

HSP 1 Score: 195 bits (495), Expect = 1.76e-62
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNN-PSPSPKQLV 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD+NNN PSPSPKQLV
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDNNNNNPSPSPKQLV 60

Query: 61  SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           SNN YPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD
Sbjct: 61  SNN-YPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100

[Close]

BLAST of CsGy4G005600 vs. NCBI nr
Match: XP_022136791.1 (protein SPIRAL1-like 5 [Momordica charantia])

HSP 1 Score: 185 bits (470), Expect = 1.11e-58
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++PDD +NNPSPSPKQLVS
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           NN YPRAHGQNSGNF+TDRPSTKVKSAPG DSSLGYLFGD
Sbjct: 61  NN-YPRAHGQNSGNFLTDRPSTKVKSAPGXDSSLGYLFGD 99

[Close]

BLAST of CsGy4G005600 vs. NCBI nr
Match: XP_022941576.1 (protein SPIRAL1-like 5 [Cucurbita moschata] >XP_022983494.1 protein SPIRAL1-like 5 [Cucurbita maxima] >XP_023545276.1 protein SPIRAL1-like 5 [Cucurbita pepo subsp. pepo] >KAG6600565.1 Protein SPIRAL1-like 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031205.1 Protein SPIRAL1-like 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 184 bits (466), Expect = 4.38e-58
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD NN PSPSPKQ  S
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNN-PSPSPKQAAS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           NN YPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGD
Sbjct: 61  NN-YPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD 98

[Close]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL
Match: A0A0A0KUV0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047940 PE=3 SV=1)

HSP 1 Score: 216 bits (551), Expect = 2.67e-71
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ 104
           NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ
Sbjct: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGDITKQ 104

[Close]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL
Match: A0A5D3CZ49 (Protein SPIRAL1-like 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004680 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 1.30e-64
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD-HNNNPSPSPKQLV 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD H+NNPSPSPKQLV
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           S NNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 101

[Close]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL
Match: A0A1S3BTQ0 (protein SPIRAL1-like 5 OS=Cucumis melo OX=3656 GN=LOC103493166 PE=3 SV=1)

HSP 1 Score: 199 bits (507), Expect = 1.30e-64
Identity = 98/101 (97.03%), Postives = 99/101 (98.02%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD-HNNNPSPSPKQLV 60
           MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDD H+NNPSPSPKQLV
Sbjct: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDDHHNNPSPSPKQLV 60

Query: 61  SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           S NNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD
Sbjct: 61  SKNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 101

[Close]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL
Match: A0A6J1C4I1 (protein SPIRAL1-like 5 OS=Momordica charantia OX=3673 GN=LOC111008404 PE=3 SV=1)

HSP 1 Score: 185 bits (470), Expect = 5.37e-59
Identity = 89/100 (89.00%), Postives = 95/100 (95.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFG DDQP KPQVS+V+LPPPYGID++PDD +NNPSPSPKQLVS
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDQPTKPQVSRVILPPPYGIDISPDDQSNNPSPSPKQLVS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           NN YPRAHGQNSGNF+TDRPSTKVKSAPG DSSLGYLFGD
Sbjct: 61  NN-YPRAHGQNSGNFLTDRPSTKVKSAPGXDSSLGYLFGD 99

[Close]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL
Match: A0A6J1J7K0 (protein SPIRAL1-like 5 OS=Cucurbita maxima OX=3661 GN=LOC111482082 PE=3 SV=1)

HSP 1 Score: 184 bits (466), Expect = 2.12e-58
Identity = 91/100 (91.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLVS 60
           MSRGGSYGGGRSSLGYLFG DD+PRKPQVSKVVLPPPYGID+NPDD NN PSPSPKQ  S
Sbjct: 1   MSRGGSYGGGRSSLGYLFGNDDEPRKPQVSKVVLPPPYGIDINPDDQNN-PSPSPKQAAS 60

Query: 61  NNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 100
           NN YPRAHGQNSGNFITDRPSTKVKS PGGDSSLGYLFGD
Sbjct: 61  NN-YPRAHGQNSGNFITDRPSTKVKSVPGGDSSLGYLFGD 98

[Close]

BLAST of CsGy4G005600 vs. TAIR 10
Match: AT4G23496.1 (SPIRAL1-like5 )

HSP 1 Score: 120.9 bits (302), Expect = 6.0e-28
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQ-PRKPQVSKVVLP-PPYGIDLNPDDHNNNPSPSPKQL 60
           MSRGGS+GGG+SSLGYLFG D++ P+ P       P PPYG+D   +DH  +  P     
Sbjct: 1   MSRGGSFGGGQSSLGYLFGSDNEIPKTPAPPVAPKPAPPYGVDSTEEDHEADQKPK---- 60

Query: 61  VSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFGD 101
           +SNNNY R  GQNSGNF+TDRP+TKVKS PGG SSLGYLFGD
Sbjct: 61  ISNNNYQRVQGQNSGNFVTDRPTTKVKSVPGGGSSLGYLFGD 98

[Close]

BLAST of CsGy4G005600 vs. TAIR 10
Match: AT1G26355.1 (SPIRAL1-like1 )

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-18
Identity = 55/116 (47.41%), Postives = 66/116 (56.90%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSPSPKQLV- 60
           M RG S GGG+SSLGYLFG  + P KP ++    P    + ++ D       PSPK +  
Sbjct: 1   MGRGVSVGGGQSSLGYLFGSGEAP-KPAINNAPAPSSETLPISAD-------PSPKHVAA 60

Query: 61  ----------------SNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
                           S NNY RA GQN+GNF+TDRPSTKV +APGG SSL YLFG
Sbjct: 61  QTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFG 108

[Close]

BLAST of CsGy4G005600 vs. TAIR 10
Match: AT1G69230.1 (SPIRAL1-like2 )

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-18
Identity = 56/107 (52.34%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVV--------LPPPYGIDLNPDDHNNNPS 60
           M RG S GGG+SSLGYLFG  + P+   V+K           PP      N  D +    
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVD-SIKQV 60

Query: 61  PSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
           P+     S NNY RA GQN+GNFITDRPSTKV SAPGG SSL YLFG
Sbjct: 61  PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CsGy4G005600 vs. TAIR 10
Match: AT1G69230.2 (SPIRAL1-like2 )

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-18
Identity = 56/107 (52.34%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVV--------LPPPYGIDLNPDDHNNNPS 60
           M RG S GGG+SSLGYLFG  + P+   V+K           PP      N  D +    
Sbjct: 1   MGRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQAAAANAVD-SIKQV 60

Query: 61  PSPKQLVSNNNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSLGYLFG 100
           P+     S NNY RA GQN+GNFITDRPSTKV SAPGG SSL YLFG
Sbjct: 61  PAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFG 106

[Close]

BLAST of CsGy4G005600 vs. TAIR 10
Match: AT2G03680.1 (spiral1 )

HSP 1 Score: 79.0 bits (193), Expect = 2.6e-15
Identity = 56/124 (45.16%), Postives = 63/124 (50.81%), Query Frame = 0


Query: 1   MSRGGSYGGGRSSLGYLFGKDDQPRKPQVSKVVLPPPYGIDLNPDDHNNNPSP------- 60
           M RG S GGG+SSL YLFG D    KP    V  P P      P + NN P+P       
Sbjct: 1   MGRGNSCGGGQSSLDYLFGGDAPAPKP----VPAPRP-----APTESNNGPAPPVTAVTA 60

Query: 61  ----------SPKQLVSN---------NNYPRAHGQNSGNFITDRPSTKVKSAPGGDSSL 99
                      P +L            NNY RA GQN+GNF+TDRPSTKV +APGG SSL
Sbjct: 61  TALTTATTSVEPAELNKQIPAGIKTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSL 115

The following BLAST results are available for this feature:

BLAST of CsGy4G005600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD1	8.4e-27	61.76	Protein SPIRAL1-like 5 OS=Arabidopsis thaliana OX=3702 GN=SP1L5 PE=2 SV=1	[more]
Q7Y1L9	3.2e-18	50.00	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
B3H4F1	2.1e-17	47.41	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q9LE54	6.0e-17	52.34	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q2QQ99	7.4e-15	50.00	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]

BLAST of CsGy4G005600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146520.1	5.52e-71	100.00	protein SPIRAL1-like 5 [Cucumis sativus] >KGN53333.1 hypothetical protein Csa_01...	[more]
XP_008452039.1	2.68e-64	97.03	PREDICTED: protein SPIRAL1-like 5 [Cucumis melo] >KAA0044824.1 protein SPIRAL1-l...	[more]
XP_038883008.1	1.76e-62	97.03	protein SPIRAL1-like 5 [Benincasa hispida]	[more]
XP_022136791.1	1.11e-58	89.00	protein SPIRAL1-like 5 [Momordica charantia]	[more]
XP_022941576.1	4.38e-58	91.00	protein SPIRAL1-like 5 [Cucurbita moschata] >XP_022983494.1 protein SPIRAL1-like...	[more]

BLAST of CsGy4G005600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUV0	2.67e-71	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G047940 PE=3 SV=1	[more]
A0A5D3CZ49	1.30e-64	97.03	Protein SPIRAL1-like 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2...	[more]
A0A1S3BTQ0	1.30e-64	97.03	protein SPIRAL1-like 5 OS=Cucumis melo OX=3656 GN=LOC103493166 PE=3 SV=1	[more]
A0A6J1C4I1	5.37e-59	89.00	protein SPIRAL1-like 5 OS=Momordica charantia OX=3673 GN=LOC111008404 PE=3 SV=1	[more]
A0A6J1J7K0	2.12e-58	91.00	protein SPIRAL1-like 5 OS=Cucurbita maxima OX=3661 GN=LOC111482082 PE=3 SV=1	[more]

BLAST of CsGy4G005600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23496.1	6.0e-28	61.76	SPIRAL1-like5	[more]
AT1G26355.1	1.5e-18	47.41	SPIRAL1-like1	[more]
AT1G69230.1	4.3e-18	52.34	SPIRAL1-like2	[more]
AT1G69230.2	4.3e-18	52.34	SPIRAL1-like2	[more]
AT2G03680.1	2.6e-15	45.16	spiral1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..81
None	No IPR available	PANTHER	PTHR33403:SF19	PROTEIN SPIRAL1-LIKE 5	coord: 1..100
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G005600.2	CsGy4G005600.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization
cellular_component	GO:0010005	cortical microtubule, transverse to long axis