CsGy4G004708 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G004708
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 3226578 .. 3226796 (-)
RNA-Seq ExpressionCsGy4G004708
SyntenyCsGy4G004708
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCATCCCTTGGAGCTTCCTATGCCAAAATCCACCTCCTACAGAAGCAACAAAAGGAGAAACTTGAGAGAATGGAACCAAATCGATTCTCCCGAGGAGAGACCGCCACCGCCACGGGTTCCTCTAGTGGTGGTTCTTTGCTTGCAAGGAATAAAAAAGTTCACCCGGGAAGCATTGCTCCGACGACCACAGTCGACAGCTACAAAAATAGAACATGA

mRNA sequence

ATGTCATCCCTTGGAGCTTCCTATGCCAAAATCCACCTCCTACAGAAGCAACAAAAGGAGAAACTTGAGAGAATGGAACCAAATCGATTCTCCCGAGGAGAGACCGCCACCGCCACGGGTTCCTCTAGTGGTGGTTCTTTGCTTGCAAGGAATAAAAAAGTTCACCCGGGAAGCATTGCTCCGACGACCACAGTCGACAGCTACAAAAATAGAACATGA

Coding sequence (CDS)

ATGTCATCCCTTGGAGCTTCCTATGCCAAAATCCACCTCCTACAGAAGCAACAAAAGGAGAAACTTGAGAGAATGGAACCAAATCGATTCTCCCGAGGAGAGACCGCCACCGCCACGGGTTCCTCTAGTGGTGGTTCTTTGCTTGCAAGGAATAAAAAAGTTCACCCGGGAAGCATTGCTCCGACGACCACAGTCGACAGCTACAAAAATAGAACATGA

Protein sequence

MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIAPTTTVDSYKNRT*
Homology
BLAST of CsGy4G004708 vs. NCBI nr
Match: KAE8649159.1 (hypothetical protein Csa_014463, partial [Cucumis sativus])

HSP 1 Score: 139 bits (351), Expect = 2.43e-41
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 60
          MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA
Sbjct: 11 MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 70

Query: 61 PTTTVDSYKNRT 72
          PTTTVDSYKNRT
Sbjct: 71 PTTTVDSYKNRT 82

BLAST of CsGy4G004708 vs. NCBI nr
Match: KAG6600624.1 (hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 106 bits (265), Expect = 2.36e-28
Identity = 57/72 (79.17%), Postives = 59/72 (81.94%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 60
          MSS+GASYAKIHLLQKQQKEKLERME +R SRGE  TA  SS GGSLLAR  KVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKEKLERMEADRISRGEAVTAA-SSGGGSLLARKNKVHPGSIA 60

Query: 61 PTTTVDSYKNRT 72
          P    DSYKNRT
Sbjct: 61 PAAAADSYKNRT 71

BLAST of CsGy4G004708 vs. NCBI nr
Match: KAG6577271.1 (hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.28e-25
Identity = 55/72 (76.39%), Postives = 58/72 (80.56%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 60
          MSS+GASYAKIHLLQKQQK+KLE ME NR SRGE A AT S  GGSLLAR+ KVHPGSIA
Sbjct: 1  MSSIGASYAKIHLLQKQQKDKLESMEANRPSRGEAAAATSSGGGGSLLARSNKVHPGSIA 60

Query: 61 PTTTVDSYKNRT 72
          P    DS KNRT
Sbjct: 61 PVA--DSNKNRT 70

BLAST of CsGy4G004708 vs. NCBI nr
Match: PON65265.1 (hypothetical protein PanWU01x14_117820 [Parasponia andersonii])

HSP 1 Score: 58.5 bits (140), Expect = 2.55e-09
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGET----ATATGSSSGGS-LLARNKKVH 59
          MSS+GAS A ++++QK+QKEK+ERME  R  RGE+       +G S GGS  L R+KK+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

BLAST of CsGy4G004708 vs. NCBI nr
Match: EOX92223.1 (Uncharacterized protein TCM_001203 [Theobroma cacao])

HSP 1 Score: 58.2 bits (139), Expect = 4.29e-09
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 60
          MSS+GAS A+++L++K+QKEK++RME  R  RGET T       G+++ R+K VHPG+  
Sbjct: 1  MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGETTTGIEERKAGTIVGRSK-VHPGNF- 60

Query: 61 PTTTVDS 67
           T+  DS
Sbjct: 61 -TSPADS 64

BLAST of CsGy4G004708 vs. ExPASy TrEMBL
Match: A0A2P5CW36 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.23e-09
Identity = 33/64 (51.56%), Postives = 45/64 (70.31%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGET----ATATGSSSGGS-LLARNKKVH 59
          MSS+GAS A ++++QK+QKEK+ERME  R  RGE+       +G S GGS  L R+KK+H
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGRSGGGSNTLGRSKKIH 60

BLAST of CsGy4G004708 vs. ExPASy TrEMBL
Match: A0A061DQL6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.08e-09
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIA 60
          MSS+GAS A+++L++K+QKEK++RME  R  RGET T       G+++ R+K VHPG+  
Sbjct: 1  MSSIGASCAEVYLMRKRQKEKMKRMEEERVKRGETTTGIEERKAGTIVGRSK-VHPGNF- 60

Query: 61 PTTTVDS 67
           T+  DS
Sbjct: 61 -TSPADS 64

BLAST of CsGy4G004708 vs. ExPASy TrEMBL
Match: A0A2N9EUS9 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 8.61e-09
Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPG 57
          MSS+GAS A+I++++K+QKEKL+RME  R  +GE++      SG S + R+KKVHPG
Sbjct: 1  MSSIGASCAEIYVMRKRQKEKLKRMEEERVRKGESSVEESKVSG-STIGRSKKVHPG 56

BLAST of CsGy4G004708 vs. ExPASy TrEMBL
Match: A0A2P5BZF9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.01e-08
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 0

Query: 1  MSSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGS-----LLARNKKVH 57
          MSS+GAS A ++++QK+QKEK+ERME  R  RGE+     + SGGS        R+KKVH
Sbjct: 1  MSSIGASCAGVYVMQKRQKEKMERMEEERARRGESQDNKVAGSGGSGGASNTFGRSKKVH 60

BLAST of CsGy4G004708 vs. ExPASy TrEMBL
Match: A0A6A3CMH4 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00004630pilonHSYRG00058 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.63e-07
Identity = 27/61 (44.26%), Postives = 40/61 (65.57%), Query Frame = 0

Query: 2  SSLGASYAKIHLLQKQQKEKLERMEPNRFSRGETATATGSSSGGSLLARNKKVHPGSIAP 61
          +S+GAS AK++L++K QKEK++RME  R SRGE + A       +++    KVHPG+   
Sbjct: 3  TSIGASCAKVYLMRKHQKEKMKRMEEERKSRGENSGAIEEKKPTTVVGGRSKVHPGNFTS 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8649159.12.43e-41100.00hypothetical protein Csa_014463, partial [Cucumis sativus][more]
KAG6600624.12.36e-2879.17hypothetical protein SDJN03_05857, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6577271.11.28e-2576.39hypothetical protein SDJN03_24845, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON65265.12.55e-0951.56hypothetical protein PanWU01x14_117820 [Parasponia andersonii][more]
EOX92223.14.29e-0947.76Uncharacterized protein TCM_001203 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
A0A2P5CW361.23e-0951.56Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_117820 PE... [more]
A0A061DQL62.08e-0947.76Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_001203 PE=4 SV=1[more]
A0A2N9EUS98.61e-0952.63Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS6201 PE=4 SV=1[more]
A0A2P5BZF91.01e-0851.61Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_303210 PE=4 SV... [more]
A0A6A3CMH42.63e-0744.26Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00004630pilon... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 17..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..72
NoneNo IPR availablePANTHERPTHR34950:SF2BNAC01G00560D PROTEINcoord: 1..66
NoneNo IPR availablePANTHERPTHR34950OS04G0457400 PROTEINcoord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G004708.1CsGy4G004708.1mRNA