CsGy4G004483 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G004483
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionMajor pollen allergen Ole e 6-like
LocationGy14Chr4: 2951748 .. 2952077 (+)
RNA-Seq ExpressionCsGy4G004483
SyntenyCsGy4G004483
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGAAAAATGAAGTTGTTGGTATTGTCTTCAATCTCTGGAGAAATGGTTTTTTTTTTTTTTTTTTGTTATATCAAGACAATAGTTAA

mRNA sequence

ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGAAAAATGAAGTTGTTGGTATTGTCTTCAATCTCTGGAGAAATGACAATAGTTAA

Coding sequence (CDS)

ATGGCAAAAACCATTACGATTGTTTTCTTTATGTCCATTGTTGTGGTGGGATCACTGCAATTCTCTAAGGCACACATGACCGCTGAAAGGGATGCTGAGATTGAGAGGAAATCTAATACTTTGTTTAACGAAATATCCAATCTAGAGCCTCAATACAAATCATGTGTAGAAACGTGCAAGAAAACATGCACGACAAAAGGCGTTGCTAACGATTTGTGTGATCCTATATGTGATAAAGATTGCATGAAAAATGAAGTTGTTGGTATTGTCTTCAATCTCTGGAGAAATGACAATAGTTAA

Protein sequence

MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCKKTCTTKGVANDLCDPICDKDCMKNEVVGIVFNLWRNDNS*
Homology
BLAST of CsGy4G004483 vs. NCBI nr
Match: KAA0035393.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 120 bits (302), Expect = 3.09e-33
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETC 60
          MAKT T+VFFM IVVV GSLQFS+A MTA+RD EIE +S  L +EIS++ PQ+KSCVETC
Sbjct: 1  MAKTSTVVFFMCIVVVVGSLQFSRADMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETC 60

Query: 61 KKTCTTKGVANDLCDPICDKDCMKNEVVGIVFNL 93
          +K C  K  AN  C   CDKDCMK EVVGIV NL
Sbjct: 61 EKACIAKDGANTSCHSTCDKDCMKKEVVGIVLNL 94

BLAST of CsGy4G004483 vs. NCBI nr
Match: KAA0036015.1 (major pollen allergen Ole e 6-like [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (279), Expect = 1.14e-29
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETC 60
          MAK+ TIVFFM IVVV GSLQFS+A MTAERD EIE +S  L +EISN+ PQ+KSCVETC
Sbjct: 1  MAKSSTIVFFMCIVVVVGSLQFSRADMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETC 60

Query: 61 KKTCTTKGVANDLCDPICDKDCMKNEVV 87
           K C  K  AN  C   CDKDCMK EVV
Sbjct: 61 AKACIAKDSANTSCHSTCDKDCMKKEVV 88

BLAST of CsGy4G004483 vs. NCBI nr
Match: KAG6595587.1 (hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 4.63e-13
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCK 60
          MAK +  V  M +++V +LQFS    TA+  AE+E +  + F ++S +E + KSC  TC+
Sbjct: 1  MAKKMMAVLLMCVLLVSALQFS----TADSPAEMEARFKSFFGDLSGVEAKLKSCAATCE 60

Query: 61 KTCTTKGVANDLCDPICDKDCMKNEV 86
          K C  KG  ++ C P C+ DC K EV
Sbjct: 61 KECVAKGETSESCKPKCNTDCGKKEV 82

BLAST of CsGy4G004483 vs. NCBI nr
Match: KAE8637567.1 (hypothetical protein CSA_017844, partial [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 5.16e-13
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 0

Query: 3   KTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTL-FNEISNLEPQYKSCVETCKK 62
           K I +VFFM IVV+GSLQFSKA  TA    +++         E   L PQ +SCV TC+K
Sbjct: 20  KNIMVVFFMCIVVMGSLQFSKAQTTANMSPDLQAAEKIKSIAEGMKLWPQMESCVLTCRK 79

Query: 63  TCTTKGVANDLCDPICDKDCMKNEVVGI 89
            C  KG AN  C   C+ DC +  +  +
Sbjct: 80  ECDAKGNANASCHQKCNNDCTEKTIASV 107

BLAST of CsGy4G004483 vs. NCBI nr
Match: KAG6595593.1 (hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.0 bits (149), Expect = 4.42e-10
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCK 60
          MAK +  V  M ++VV +LQFS    TA++  E+E K  + F++   +E ++KSC  TC+
Sbjct: 1  MAKKMMAVVLMCVLVVSALQFS----TADKSTEMEAKFKSFFSDFGTVEAKFKSCAATCQ 60

Query: 61 KTCTTKGVANDLCDPICDKDCMKNEV 86
          K CT     N  C   CD DC K EV
Sbjct: 61 KKCT-----NASCRSKCDADCGKKEV 77

BLAST of CsGy4G004483 vs. ExPASy TrEMBL
Match: A0A5A7SXV7 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13030G00010 PE=4 SV=1)

HSP 1 Score: 120 bits (302), Expect = 1.50e-33
Identity = 63/94 (67.02%), Postives = 72/94 (76.60%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETC 60
          MAKT T+VFFM IVVV GSLQFS+A MTA+RD EIE +S  L +EIS++ PQ+KSCVETC
Sbjct: 1  MAKTSTVVFFMCIVVVVGSLQFSRADMTADRDTEIEMRSKLLQSEISSVMPQFKSCVETC 60

Query: 61 KKTCTTKGVANDLCDPICDKDCMKNEVVGIVFNL 93
          +K C  K  AN  C   CDKDCMK EVVGIV NL
Sbjct: 61 EKACIAKDGANTSCHSTCDKDCMKKEVVGIVLNL 94

BLAST of CsGy4G004483 vs. ExPASy TrEMBL
Match: A0A5A7T3F9 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold494G00090 PE=4 SV=1)

HSP 1 Score: 112 bits (279), Expect = 5.50e-30
Identity = 60/88 (68.18%), Postives = 66/88 (75.00%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVV-GSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETC 60
          MAK+ TIVFFM IVVV GSLQFS+A MTAERD EIE +S  L +EISN+ PQ+KSCVETC
Sbjct: 1  MAKSSTIVFFMCIVVVVGSLQFSRADMTAERDTEIEMRSKLLQSEISNVMPQFKSCVETC 60

Query: 61 KKTCTTKGVANDLCDPICDKDCMKNEVV 87
           K C  K  AN  C   CDKDCMK EVV
Sbjct: 61 AKACIAKDSANTSCHSTCDKDCMKKEVV 88

BLAST of CsGy4G004483 vs. ExPASy TrEMBL
Match: A0A5A7TDR1 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002630 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 5.17e-08
Identity = 32/92 (34.78%), Postives = 48/92 (52.17%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCK 60
          MAK +  VF M IV+V +LQF+           I ++ + +    +  + +YKSC ETC+
Sbjct: 1  MAKKMMAVFLMCIVLVATLQFA-----------IAKEEDEVTKYEAKFDAKYKSCYETCE 60

Query: 61 KTCTTKGV-ANDLCDPICDKDCMKNEVVGIVF 91
          K C  KG      C+  CD+DC + E  GI+ 
Sbjct: 61 KECLQKGNNGQSFCEVKCDEDCSEKEAAGILL 81

BLAST of CsGy4G004483 vs. ExPASy TrEMBL
Match: A0A5D3BCS2 (Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold233G00230 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.46e-07
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCK 60
          MAK +  +F M IVVV +LQF+ A+           K + +    +  + +YKSC +TC+
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASAN-----------KEDEVAKYEAKFDAKYKSCFKTCE 60

Query: 61 KTCTTKGVANDLCDPICDKDCMKNEV 86
          K C   G     C+  CD+DC + EV
Sbjct: 61 KECLENGSGQSYCEVKCDEDCNEKEV 75

BLAST of CsGy4G004483 vs. ExPASy TrEMBL
Match: A0A1S3C530 (major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.46e-07
Identity = 30/86 (34.88%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 1  MAKTITIVFFMSIVVVGSLQFSKAHMTAERDAEIERKSNTLFNEISNLEPQYKSCVETCK 60
          MAK +  +F M IVVV +LQF+ A+           K + +    +  + +YKSC +TC+
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASAN-----------KEDEVAKYEAKFDAKYKSCFKTCE 60

Query: 61 KTCTTKGVANDLCDPICDKDCMKNEV 86
          K C   G     C+  CD+DC + EV
Sbjct: 61 KECLENGSGQSYCEVKCDEDCNEKEV 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0035393.13.09e-3367.02major pollen allergen Ole e 6-like [Cucumis melo var. makuwa][more]
KAA0036015.11.14e-2968.18major pollen allergen Ole e 6-like [Cucumis melo var. makuwa][more]
KAG6595587.14.63e-1340.70hypothetical protein SDJN03_12140, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8637567.15.16e-1343.18hypothetical protein CSA_017844, partial [Cucumis sativus][more]
KAG6595593.14.42e-1040.70hypothetical protein SDJN03_12146, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A5A7SXV71.50e-3367.02Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5A7T3F95.50e-3068.18Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C... [more]
A0A5A7TDR15.17e-0834.78Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BCS21.46e-0734.88Major pollen allergen Ole e 6-like OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
A0A1S3C5301.46e-0734.88major pollen allergen Ole e 6-like OS=Cucumis melo OX=3656 GN=LOC103496750 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036466Pollen allergen ole e 6 superfamilyGENE3D1.10.287.720Pollen allergen ole e 6coord: 49..93
e-value: 2.0E-9
score: 38.8
IPR036466Pollen allergen ole e 6 superfamilySUPERFAMILY111388Pollen allergen ole e 6coord: 49..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G004483.1CsGy4G004483.1mRNA