CsGy4G004260 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G004260
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr4: 2789359 .. 2795472 (+)
RNA-Seq Expression	CsGy4G004260
Synteny	CsGy4G004260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCACAACAATGTTATCCCTAGCGGCCACTTTAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACTAGGAGAAGAAATGGTAAGCGCTGTTTTTGTTTTGTGCTCTAGTTGGTGTTTTGTTCATCTGTGTAGCTTAGATATGTAACTCTAACTATTGCCATGATGGTTCTACAATTAGCTCGTCAGGAGAAAGCTGTGAAGAACTTTCCTCGCCCAACTGCTGGACCACTCCGTCCCGTTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGAGCTGGTAGAGGCTTTTCTCTTGAGGAGTTGAAGGTACCCAGTTTTCTCCCACTCTATCTTTAGTTTCATGTTGCCTTCTTAGAGTCTTGGCGTTAGGGTTTTATAGTTTCCATTGCCAATGAATGTCTATTGGTTTCTAGAATGTGCATTTTAGTAAGATGGCTCACATTATGTTGATCACTTTTGTTCTCAGCCTGCATGTAATGAAACTTAAACTTAGCAGAATATTTTATTCATCTAGATTTTATGCTTGGTCAGTTTGAAGGTGTCATTGTCTTTAAGAACTCCAGGTTATGATCATTTATACGGTATATTAATTATCCTAGTATCTGCTGCCCAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACAATTGGAATATCAGTTGACCATCGCCGTAGGAATCGATCTCTTGAAAGTCTACAGGCTAATGTACAGAGGTTGAAGACATACAAGGCGAAGGTGGTCGTCTTCCCAAGACGTGCTCGTAAATTTAAGGTCAGTTCGTCGAAAATAATAAAACTTTAATTGAATTTTATCATCTACTTTGGTTTCATCTCAACATGTTGGCTGTATGAATGATGTAGGCTGGTGATTCTACTCCGGAGGAGCTTGCAAATGCCACCCAAGTCCAAGGACCATACCTGCCTATTGGGCGCGAGAAGGCATCAGTTGAGCTTGTGAAGGTCACCGAGGAAATGAAATCATTCAAGGCATACGACAAGCTACGTGTTGAGAGGACAAACGCACGACATGTTGGAGCTAGATTGAAGAGGGCAGCAGAGGCGGAGAAGGAAGATAAGAAGTAGATTGCGGTAACGACTGCTTAGAGGTGGTTGTATTTTCTGAATTTTGGTATTTATTTTTACAACATTTTGGACTTAGACATGTCTTCTGGACTTAATTTGGTAGATGAAAGGTATGAGTTCATGGATTCAACCAGTTAATTGACCTTTCTTTTTGGTCTTGTGTAGTATTGGCACTTCGTTGTGGTTTATTATGTTTTACAGCATCCAAAATAGCTTTTTGCAATCTTTGCTTCATTTGGTTTGATGTATTCTTTGGCTGGGTTGGAACCTCAACGCTAGAATTGGAATTAGCTCTAAATTTGAACACAATTTTGGGTGTTGGATAAGAGTTTGGTTTTCTACCAATCACTTGAAAATGAACATGATTTCATTTTTTACACAATCTGTGTTTTATCTTTGAAAGATTCTCAACTAATTCATTTGTTTCAAACAAGGAAGTCTTTGAAATGATTGTGTTTTAATTTTTGTGTTTGGACTGTTGTGGAAAATGAAAAGAACTTCAAAGTAATTACTACGAACTTAGTAATTTACTTCTAATTTTAATGAAATGCTTATAACTTTGTTTTCTTTAGGACTTAAAATCACTTATAAACTACGGCATTAAATTGAAATCTTTCAAAATTATGAGGTTGTGACTATGTCTTTGGTTAATTATGGTGAATTATAGGCAAGTTTTTCACTTTTGAGAAAGTGTTTGGAGCATCTCTTTGTAAATGATTATGATATTTTTCATTTCATAATTGTTAAAGTCAAATCAGAGTGATTGAAGTTGTGTCTTGGACTGATTTTTAATATGACAATCATTTTTATTCTTTTAATTTCTGTTTAAGGGTTTAAATCTAGTTTTTGCCAACTCTTTTGATGCAATTTTCTTACAAATTATTTCTCAAATGTCCATACAAGAGGTAGGATAGAGGTGACAGATTCAAACCCTAAAAATCATACTATTTTTTATATTCAAACCAAACTGAATATTTTTTAATTATTATATATTTATTTTAATATGTATATATTAGAAAAAAGAATGATCAATGTGGAATTTAAAATTGAACCAAAGAATAAAGTCGAATTTAAAATCAAGCTAAACTAAAAATATATTAAAAAAATTTAATAAACATTTTTAAAATAACAAAATAAATTAAAATATTTAAGTTATAGCAAATTTTTTTAGATTCGAATATCATATAAACTATTATGTGCCAGTGGTTTTTTTGATATATGACTATTTTAAAACATAGCAAAATAACAAAAATATTTAATAAACTACGACATTCTTTATAAAGTATTGAATATTTAAACCTACTTTAAAAATTTAGAGATTAAAAAAATATACCTTTCCCAAACTTAGAAATGAAATGGATCTAATAATGATGTAAACATTGAGATAAAATACATTTTTGAAAGGTAGAAATAAAATGAATTTAAAAGTTAAAATTTTCCTTATTTCTATTTATTTAACGAGTGAGGGTATAAATGTAATTTGAATTGCAAAGTTTTTGTATTTTGACACAATTTTTATTATTAAAGGGTAAAAAAACTAATCTCTTTTAGAGCTACCTTTTGCAATAATCCACAAACCGCCGGCGGGTACTCCTTCGCGGAGGCGTCTTCTTGCTGCCTCGTCAATTTGACATAGAAGCCTTCTCCTCCTCCTTGGACGGACGGGGACTATCCAACAGCAACTCTCGATATCTTCTCCACATATCCACGCCGGCGCCGTCCTCCTCTCACTGGTACCAGTCTAACGCTTCCTTCCTATACACATTACCGCCACCTCTAGTTTATCCTTCTCCGATAGAGGAATAGGTTTTCAATTTGCTTAGGTCGCAATATTTTTGTTGCAGGCATGTTACGTTGTTTTGGATTCTTGTTACAGTATTGTTTGAAGTAAAAGAAGCTAGCGGTCGCTTTAATTAACTTCATTGTCTTTGAATTTGTCGAGTGCTTGATGTTTCATTTGGATTAGAATTTCTGGTTAAGTTTTTTGTCATTTTTAGATTCATCTCCTTTGTTTGCAGCATGAAGATGCATTCTATTTTCTTGCCAAAAGCGTTCATCGTATCCTCATTTGGTGGAGTATTTTCTGACCATTTGTTGCAACGAGGTTCTAGTAAATGCGACGGCAAGTACATGTTTGATGGTGGCATAGTGAAGTTGTTTAGGAATAATTCCCTAAATTTTGCCAGTAAAGCAGTGGTAGATGATAATTGTATTATTAGCTCAAGGTGGCATGGATGTATAGATGAAGAGGAACTATCGAGTGAGTCGTGCAACCGTTTGATTCGTGACTATTGTAAGGTAGGTGATGTTGATTCTGCTATGTCTCTTCTTGCTCATATGGAGTCTGTAGGTCTTCATGCCACTATGACGTCTTACACTTATTTGATTGAAGCTCTTGGAAACGTTGGTAGAACTTTGGAAGCTGATATCATATTCCAGGAAATGATTAGTTTTGGCTGTAAGCCAAGAACAGTTGTCTGCAATGCACTACTAAGAGGGTTTTTGAGAAAAGGCCTTTTAGATCTTGCGTCTGGGGTTTTTGTATTGATGAGTGATTTAGATATTAAAAAAAATCAAGAAACTTATGAAATTCTCTTGGATTATCATGTCAATGCTGGACGGTTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGTTGAACTCATTTGTGTATAGTAAAGTTATTGTTATATATCAAAACAATGGCATGTGGAAGAAAGCAGTGGGAATTGTTGATGAAATAAGAAAATCAGGGATTTCTATGGACAAACACATTTACAACAGCATCATAGATACATTTGGGAAATATGGCCACTTGTCTGAGGCCTTAGAAGTGTTCAAAAGAATGCAACAAGATGGGGTAGTGCCTGATATAACAACTTGGAATTCATTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCTCTTGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATCTTCATTACTCTAATAAGCTTCTTGGGTGAGCAGGGAAAGTGGGATGTGATCAATCAGAATCTTGATAGTATGAAGCTCAGAGGGCACAAGAATAGTGTCCTAGTTTATGAAATTTTAGTAGATATTTATGGGCAGTATGGTCAATTTCAGGATGCTGAGAAGTGCATATCCGCTCTGAAGTCTGCAGGGCTTCTAGCATCTTGTAGCAATTTTTGCATTATAGCAAACGCTTTTGCTCAACAGGTTGGATGCCCATCTTTACAATTTTTTTTTTTTGAGCTACCAAGGTTGACTGAATTTTCATGGCCCTGCTTTGTTGTCAGTTCTTTGTTCTCTGTGAAGAGAGGCTGCGTGTTTTAAATAGAAAAAGAAATAATGGATCGTGATTACTAATTTATGATAAGGGTTTTTCTTGTATTTTGGTAATCCAATACAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTCATGGAAGCAGAAGGAATTGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCTTTTGCTGTTGCTGGTAGGCATTCGGAAGCGTTAGCCATTTATCATCATATAATTGAAGTCGTAAGTCTTTATGTTCGGGAATGCAAAACCAGAAGATTTAGTTAAAGCCACATGCAATCTAATTTCATCTTTTCTTTGTGTTATCAAGATAATTCTATGATTCATCCTTCTATTTTTCTTCTTCTTAATTTTGTCATATTTTTCTGAGAAGGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCATTTATTCGTGCAAAGAAGTTTGCTAAGGTGCTTATCTCTTGACCGAGTAAATTTTTGAGCTTGATCCAAACGACCAAACCTTTAGTTTACTAGCCATTTGTCCTTATTAACACTGTTCATGTTGAAATGAGTCTTACATTCTTGTATGAAGTTATTCAATTCTTCTTTGTGAAACCCTGCTGATACCTTCTAAGTTCCATATTTGGCTAGGTCCCTGAAATATATAAAGAAATGGAAAGTGCTGGCTGCACGCCAGATAGGAAGGCCAGAGAGATGTTAAAATCCGTAACAGCTATTCTTGAACAAAGGCATTGTAAGTTCCACCCTTTTTGTACTTGTATTTTGTATTTTCTCAGCCAGAGCAGTCCTTGCAAAATTGTTGTACAATTCTTCACCATCTAGGCAATGGTAAATTTAGAACGTCAAGTCATAATTTGAAAAGTTCATACCTGGAGAGTGGTGCATTATGCGTCCGACAGAAAGATTCTGCTTGCAAATATTGCATTGTGTCAGGCTACAAGTTTTATTACAAGTATATTGCTACCTATTCCATAATCGGTGGCTTAGATAATTTATGTCATTTGTCAAGTCAAGTTATGTCAACCTGTAAAGACATACAAATTTTTGTCTTGTTGGCAATTATGAAGAAGGATCAAAGGAATAAAAAAAGAGGTACAGGACGGCATATTCCAAATGGTAAATGCTCATTGGAGCCCCACATCTAAATAGACACCAAAAATATGGTCTTAGGGACTAGGGCTTTTTAGGGGTTGGATTTGTAATTGATTAAAAAAAATCACGTAAAAATATTTTTTAAGCACTTAGTTGGTCATTTCAAACATGGCTAGATCGGTGGTCTTACTAGTGAATTAAGTTTTGATGCAGCTGAGTGAACGACCAAAGTGGGAGTAAATTTTCCGGTGCCTTTATTTTGCAAATGATGAATACTGTAATCTACTTTAGATCTTTCAATAAGAACCCAAGGAGAGCATAACCAGCCCCCTAGTAGTTTATATTATATGCCCTCTCCCAGCCTTCCGATTAACTCGTGGTTTGGGAATAAAATCATTGGTTAAAAAACATTGTTTCTTATACCTACGGTCACATTTCTTTGTGTGTGTGTTTTAATTAGAGAAAGACAGCAACTGATACTTGCTAGTGTGGAGTTCTTGAATGTTTGGATCTTTTTCTTTGAAAAACAGACAGATAA

mRNA sequence

ATGAAGCACAACAATGTTATCCCTAGCGGCCACTTTAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTTCCTCGCCCAACTGCTGGACCACTCCGTCCCGTTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGAGCTGGTAGAGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACAATTGGAATATCAGTTGACCATCGCCGTAGGAATCGATCTCTTGAAAGTCTACAGGCTAATGTACAGAGGTTGAAGACATACAAGGCGAAGGTGGTCGTCTTCCCAAGACGTGCTCGTAAATTTAAGGCTGGTGATTCTACTCCGGAGGAGCTTGCAAATGCCACCCAAGTCCAAGGACCATACCTGCCTATTGGGCGCGAGAAGGCATCAGTTGAGCTTGTGAAGGTCACCGAGGAAATGAAATCATTCAAGGCATACGACAAGCTACGTAGGTGGTTGTATTTTCTGAATTTTGGTATTTATTTTTACAACATTTTGGACTTAGACATGTCTTCTGGACTTAATTTGGTAGATGAAAGTATTGGCACTTCGTTGTGGTTTATTATGTTTTACAGCATCCAAAATAGCTTTTTGCAATCTTTGCTTCATTTGGCAAGTTTTTCACTTTTGAGAAAGTGTTTGGAGCATCTCTTTTTTTTGCCAACTCTTTTGATGCAATTTTCTTACAAATTATTTCTCAAATGTCCATACAAGAGAAATGAAATGGATCTAATAATGATAGCTACCTTTTGCAATAATCCACAAACCGCCGGCGGCAACTCTCGATATCTTCTCCACATATCCACGCCGGCGCCGTCCTCCTCTCACTGCATGAAGATGCATTCTATTTTCTTGCCAAAAGCGTTCATCGTATCCTCATTTGGTGGAGTATTTTCTGACCATTTGTTGCAACGAGGTTCTAGTAAATGCGACGGCAAGTACATGTTTGATGGTGGCATAGTGAAGTTGTTTAGGAATAATTCCCTAAATTTTGCCAGTAAAGCAGTGGTAGATGATAATTGTATTATTAGCTCAAGGTGGCATGGATGTATAGATGAAGAGGAACTATCGAGTGAGTCGTGCAACCGTTTGATTCGTGACTATTGTAAGGTAGGTGATGTTGATTCTGCTATGTCTCTTCTTGCTCATATGGAGTCTGTAGGTCTTCATGCCACTATGACGTCTTACACTTATTTGATTGAAGCTCTTGGAAACGTTGGTAGAACTTTGGAAGCTGATATCATATTCCAGGAAATGATTAGTTTTGGCTGTAAGCCAAGAACAGTTGTCTGCAATGCACTACTAAGAGGGTTTTTGAGAAAAGGCCTTTTAGATCTTGCGTCTGGGGTTTTTGTATTGATGAGTGATTTAGATATTAAAAAAAATCAAGAAACTTATGAAATTCTCTTGGATTATCATGTCAATGCTGGACGGTTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGTTGAACTCATTTGTGTATAGTAAAGTTATTGTTATATATCAAAACAATGGCATGTGGAAGAAAGCAGTGGGAATTGTTGATGAAATAAGAAAATCAGGGATTTCTATGGACAAACACATTTACAACAGCATCATAGATACATTTGGGAAATATGGCCACTTGTCTGAGGCCTTAGAAGTGTTCAAAAGAATGCAACAAGATGGGGTAGTGCCTGATATAACAACTTGGAATTCATTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCTCTTGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATCTTCATTACTCTAATAAGCTTCTTGGGTGAGCAGGGAAAGTGGGATGTGATCAATCAGAATCTTGATAGTATGAAGCTCAGAGGGCACAAGAATAGTGTCCTAGTTTATGAAATTTTAGTAGATATTTATGGGCAGTATGGTCAATTTCAGGATGCTGAGAAGTGCATATCCGCTCTGAAGTCTGCAGGGCTTCTAGCATCTTGTAGCAATTTTTGCATTATAGCAAACGCTTTTGCTCAACAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTCATGGAAGCAGAAGGAATTGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCTTTTGCTGTTGCTGGTAGGCATTCGGAAGCGTTAGCCATTTATCATCATATAATTGAAGTCGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCATTTATTCGTGCAAAGAAGTTTGCTAAGGTCCCTGAAATATATAAAGAAATGGAAAGTGCTGGCTGCACGCCAGATAGGAAGGCCAGAGAGATGTTAAAATCCGTAACAGCTATTCTTGAACAAAGGCATTACAGATAA

Coding sequence (CDS)

ATGAAGCACAACAATGTTATCCCTAGCGGCCACTTTAGGAAGCACTGGCAGAACTATGTCAGGACCTGGTTCAACCAACCTGCCCGGAAAACTAGGAGAAGAAATGCTCGTCAGGAGAAAGCTGTGAAGAACTTTCCTCGCCCAACTGCTGGACCACTCCGTCCCGTTGTTCATGGGCAGACATTGAAGTACAACATGAAAGTGAGAGCTGGTAGAGGCTTTTCTCTTGAGGAGTTGAAGGCTGCAGGTATTCCCAAGAAACTAGCACCAACAATTGGAATATCAGTTGACCATCGCCGTAGGAATCGATCTCTTGAAAGTCTACAGGCTAATGTACAGAGGTTGAAGACATACAAGGCGAAGGTGGTCGTCTTCCCAAGACGTGCTCGTAAATTTAAGGCTGGTGATTCTACTCCGGAGGAGCTTGCAAATGCCACCCAAGTCCAAGGACCATACCTGCCTATTGGGCGCGAGAAGGCATCAGTTGAGCTTGTGAAGGTCACCGAGGAAATGAAATCATTCAAGGCATACGACAAGCTACGTAGGTGGTTGTATTTTCTGAATTTTGGTATTTATTTTTACAACATTTTGGACTTAGACATGTCTTCTGGACTTAATTTGGTAGATGAAAGTATTGGCACTTCGTTGTGGTTTATTATGTTTTACAGCATCCAAAATAGCTTTTTGCAATCTTTGCTTCATTTGGCAAGTTTTTCACTTTTGAGAAAGTGTTTGGAGCATCTCTTTTTTTTGCCAACTCTTTTGATGCAATTTTCTTACAAATTATTTCTCAAATGTCCATACAAGAGAAATGAAATGGATCTAATAATGATAGCTACCTTTTGCAATAATCCACAAACCGCCGGCGGCAACTCTCGATATCTTCTCCACATATCCACGCCGGCGCCGTCCTCCTCTCACTGCATGAAGATGCATTCTATTTTCTTGCCAAAAGCGTTCATCGTATCCTCATTTGGTGGAGTATTTTCTGACCATTTGTTGCAACGAGGTTCTAGTAAATGCGACGGCAAGTACATGTTTGATGGTGGCATAGTGAAGTTGTTTAGGAATAATTCCCTAAATTTTGCCAGTAAAGCAGTGGTAGATGATAATTGTATTATTAGCTCAAGGTGGCATGGATGTATAGATGAAGAGGAACTATCGAGTGAGTCGTGCAACCGTTTGATTCGTGACTATTGTAAGGTAGGTGATGTTGATTCTGCTATGTCTCTTCTTGCTCATATGGAGTCTGTAGGTCTTCATGCCACTATGACGTCTTACACTTATTTGATTGAAGCTCTTGGAAACGTTGGTAGAACTTTGGAAGCTGATATCATATTCCAGGAAATGATTAGTTTTGGCTGTAAGCCAAGAACAGTTGTCTGCAATGCACTACTAAGAGGGTTTTTGAGAAAAGGCCTTTTAGATCTTGCGTCTGGGGTTTTTGTATTGATGAGTGATTTAGATATTAAAAAAAATCAAGAAACTTATGAAATTCTCTTGGATTATCATGTCAATGCTGGACGGTTGGAAGATACTTGGTCTATTATTAATGAGATGAAACGAAAAGGTTTTGAGTTGAACTCATTTGTGTATAGTAAAGTTATTGTTATATATCAAAACAATGGCATGTGGAAGAAAGCAGTGGGAATTGTTGATGAAATAAGAAAATCAGGGATTTCTATGGACAAACACATTTACAACAGCATCATAGATACATTTGGGAAATATGGCCACTTGTCTGAGGCCTTAGAAGTGTTCAAAAGAATGCAACAAGATGGGGTAGTGCCTGATATAACAACTTGGAATTCATTGATACAATGGAACTGTAAATCTGGGAACCTTGCTACTGCTCTTGAGTTATTCACTGACATGCAAGAACAGGGGATGCATCCAGATCCTAAGATCTTCATTACTCTAATAAGCTTCTTGGGTGAGCAGGGAAAGTGGGATGTGATCAATCAGAATCTTGATAGTATGAAGCTCAGAGGGCACAAGAATAGTGTCCTAGTTTATGAAATTTTAGTAGATATTTATGGGCAGTATGGTCAATTTCAGGATGCTGAGAAGTGCATATCCGCTCTGAAGTCTGCAGGGCTTCTAGCATCTTGTAGCAATTTTTGCATTATAGCAAACGCTTTTGCTCAACAGGGGTTGTGTGAAGAGACAGTAAAAGTGCTTCAGCTCATGGAAGCAGAAGGAATTGAACCAAATCTTGTAATGCTGAATGTACTGATCAATGCTTTTGCTGTTGCTGGTAGGCATTCGGAAGCGTTAGCCATTTATCATCATATAATTGAAGTCGGTATCAGTCCTGATGTTATAACCTACACCACCCTTATGAAGGCATTTATTCGTGCAAAGAAGTTTGCTAAGGTCCCTGAAATATATAAAGAAATGGAAAGTGCTGGCTGCACGCCAGATAGGAAGGCCAGAGAGATGTTAAAATCCGTAACAGCTATTCTTGAACAAAGGCATTACAGATAA

Protein sequence

MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQTLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKAKVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKLRRWLYFLNFGIYFYNILDLDMSSGLNLVDESIGTSLWFIMFYSIQNSFLQSLLHLASFSLLRKCLEHLFFLPTLLMQFSYKLFLKCPYKRNEMDLIMIATFCNNPQTAGGNSRYLLHISTPAPSSSHCMKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVVDDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR*

Homology

[Close]

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot
Match: Q8L844 (Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 6.7e-95
Identity = 175/442 (39.59%), Postives = 271/442 (61.31%), Query Frame = 0


Query: 383 DEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRTLE 442
           D+ EL  +  N +I  + K GD   A+ LL   ++ GL A   +   +I AL + GRTLE
Sbjct: 263 DKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLE 322

Query: 443 ADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDIKKNQETYEILLD 502
           A+ +F+E+   G KPRT   NALL+G+++ G L  A  +   M    +  ++ TY +L+D
Sbjct: 323 AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLID 382

Query: 503 YHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISM 562
            +VNAGR E    ++ EM+    + NSFV+S+++  +++ G W+K   ++ E++  G+  
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442

Query: 563 DKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNCKSGNLATALELF 622
           D+  YN +IDTFGK+  L  A+  F RM  +G+ PD  TWN+LI  +CK G    A E+F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502

Query: 623 TDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVLVYEILVDIYGQY 682
             M+ +G  P    +  +I+  G+Q +WD + + L  MK +G   +V+ +  LVD+YG+ 
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562

Query: 683 GQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLMEAEGIEPNLVML 742
           G+F DA +C+  +KS GL  S + +  + NA+AQ+GL E+ V   ++M ++G++P+L+ L
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622

Query: 743 NVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMES 802
           N LINAF    R +EA A+  ++ E G+ PDV+TYTTLMKA IR  KF KVP +Y+EM  
Sbjct: 623 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIM 682

Query: 803 AGCTPDRKAREMLKSVTAILEQ 825
           +GC PDRKAR ML+S    ++Q
Sbjct: 683 SGCKPDRKARSMLRSALRYMKQ 704

[Close]

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot
Match: A0A1D6IEG9 (Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4577 GN=CRP1 PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 1.2e-91
Identity = 172/424 (40.57%), Postives = 267/424 (62.97%), Query Frame = 0


Query: 395 LIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRTLEADIIFQEMISFG 454
           LI  + +    D+A+ LLA  +++GL     + T LI ALG  GR  EA+ +F E    G
Sbjct: 234 LISAFARAALPDAALELLASAQAIGLTPRSNAVTALISALGTAGRVAEAEALFLEFFLAG 293

Query: 455 -CKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDIKKNQETYEILLDYHVNAGRLEDT 514
             KPRT   NALL+G++R   L  A  V   MS   +  ++ TY +L+D +  AGR E  
Sbjct: 294 EIKPRTRAYNALLKGYVRIASLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESA 353

Query: 515 WSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISMDKHIYNSIIDT 574
             ++ EM+  G + +S+V+S+++  +++ G W+KA  ++ E++ SG+  D+H YN +IDT
Sbjct: 354 RILLKEMEADGVKPSSYVFSRILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDT 413

Query: 575 FGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPD 634
           FGKY  L  A++ F +M+++G+ PD+ TWN+LI  +CK G    A ELF +M+E    P 
Sbjct: 414 FGKYNCLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPG 473

Query: 635 PKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVLVYEILVDIYGQYGQFQDAEKCIS 694
              +  +I+ LGEQ  W+ +   L  MK +G   +++ Y  LVD+YG+ G++++A  CI 
Sbjct: 474 TTTYNIMINLLGEQEHWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIE 533

Query: 695 ALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAG 754
           A+K+ GL  S + +  + NA+AQ+GL +  + V++ M+A+G+E ++++LN LINAF    
Sbjct: 534 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINAFGEDR 593

Query: 755 RHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMESAGCTPDRKARE 814
           R  EA ++   + E G+ PDVITYTTLMKA IR ++F KVP IY+EM ++GC PDRKAR 
Sbjct: 594 RVVEAFSVLQFMRENGLRPDVITYTTLMKALIRVEQFDKVPVIYEEMITSGCAPDRKARA 653

Query: 815 MLKS 818
           ML+S
Sbjct: 654 MLRS 657

[Close]

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot
Match: Q84ZD2 (Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0548300 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 4.5e-91
Identity = 174/435 (40.00%), Postives = 272/435 (62.53%), Query Frame = 0


Query: 395 LIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRTLEADIIFQEMISFG 454
           LI  + +    D+A+ LLA  +++GL     + T LI +LG+  R  EA+ +F E    G
Sbjct: 227 LISAFARARLPDAALELLASAQAIGLTPRSNAVTALISSLGSARRVAEAEALFLEFFLAG 286

Query: 455 -CKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDIKKNQETYEILLDYHVNAGRLEDT 514
             KPRT   NALL+G+++ G L  A  V   MS   +  ++ TY +L+D +  AGR E  
Sbjct: 287 EIKPRTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESA 346

Query: 515 WSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISMDKHIYNSIIDT 574
             ++ EM+  G + +S+V+S+++  +++ G W+KA  ++ E+  SG+  D+H YN +IDT
Sbjct: 347 RILLKEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDT 406

Query: 575 FGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNCKSGNLATALELFTDMQEQGMHPD 634
           FGKY  L  A++ F RM+++G+ PD+ TWN+LI  +CK G    A+ELF +M+E      
Sbjct: 407 FGKYNCLGHAMDAFDRMREEGIEPDVVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLG 466

Query: 635 PKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVLVYEILVDIYGQYGQFQDAEKCIS 694
              +  +I+ LGE+ +W+ +   L  MK +G   +++ Y  LVD+YG+ G+F++A  CI 
Sbjct: 467 TTTYNIMINLLGEEQRWEGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIE 526

Query: 695 ALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLMEAEGIEPNLVMLNVLINAFAVAG 754
           A+K+ GL  S + +  + NA+AQ+GL +  + V++ M A+G+E + V+LN LINAF    
Sbjct: 527 AMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDR 586

Query: 755 RHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMESAGCTPDRKARE 814
           R +EA ++   + E G+ PDVITYTTLMKA IR ++F KVP IY+EM ++GC PDRKAR 
Sbjct: 587 RIAEAFSVLQFMKENGLRPDVITYTTLMKALIRVEQFEKVPVIYEEMITSGCAPDRKARA 646

Query: 815 MLKSVTAILEQRHYR 829
           ML+S  A+   +H R
Sbjct: 647 MLRS--ALRYMKHMR 659

[Close]

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot
Match: P41127 (60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.7e-85
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK ++ELVK+T EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot
Match: P41129 (60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.3e-84
Identity = 153/181 (84.53%), Postives = 169/181 (93.37%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPTAGPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTAGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGIS+DHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+V+FPRRARK KAGDST EELANATQVQG Y+PI REK ++ELVK+T EMKS  AYDK+
Sbjct: 121 KLVIFPRRARKVKAGDSTAEELANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CsGy4G004260 vs. NCBI nr
Match: XP_011653107.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic isoform X1 [Cucumis sativus] >XP_031739933.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic isoform X1 [Cucumis sativus] >KGN53191.1 hypothetical protein Csa_014972 [Cucumis sativus])

HSP 1 Score: 1037 bits (2682), Expect = 0.0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV
Sbjct: 1   MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT
Sbjct: 61  DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS
Sbjct: 301 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR 828
           KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR 520

[Close]

BLAST of CsGy4G004260 vs. NCBI nr
Match: KAA0044695.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 971 bits (2510), Expect = 0.0
Identity = 491/518 (94.79%), Postives = 496/518 (95.75%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM SIFLPKAFIVSSFGG FSDHLL R SSK DGKY FDG I+K FRNN LN ASKA V
Sbjct: 1   MKMQSIFLPKAFIVSSFGG-FSDHLLHRDSSKFDGKYTFDGAILKFFRNNFLNLASKAAV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCIISSRWHGCIDEEELSSESCNRLI DYCKVG+VDSAMSLLAHMESVGLHATM SYT
Sbjct: 61  DDNCIISSRWHGCIDEEELSSESCNRLICDYCKVGNVDSAMSLLAHMESVGLHATMASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYG LSEALEVFKRMQQD VVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGQLSEALEVFKRMQQDDVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIFITLISFL EQGKWDVI QNLDSMKLRGHKNS
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFITLISFLSEQGKWDVIKQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQD EKCISALKSAGLL S SNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDGEKCISALKSAGLLPSSSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KFAKVPEIYKEMESAGCTPDRK REMLKSVTA+LEQRH
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKVREMLKSVTAVLEQRH 517

[Close]

BLAST of CsGy4G004260 vs. NCBI nr
Match: XP_016901588.1 (PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis melo] >XP_016901589.1 PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like [Cucumis melo] >TYK16891.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 968 bits (2502), Expect = 0.0
Identity = 489/518 (94.40%), Postives = 496/518 (95.75%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM SIFLPKAFIVSSFGG FSDHLL R SSK DG Y FDG I+K FRNN LN ASKA V
Sbjct: 1   MKMQSIFLPKAFIVSSFGG-FSDHLLHRDSSKFDGIYTFDGAILKFFRNNFLNLASKAAV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCI+SSRWHGCIDEEELSSESCNRLI DYCKVG+VDSAMSLLAHMESVGLHATM SYT
Sbjct: 61  DDNCIVSSRWHGCIDEEELSSESCNRLICDYCKVGNVDSAMSLLAHMESVGLHATMASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYG LSEALEVFKRMQQD VVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGQLSEALEVFKRMQQDDVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIFITLISFL EQGKWDVI QNLDSMKLRGHKNS
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFITLISFLSEQGKWDVIKQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQD EKCISALKSAGLL S SNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDGEKCISALKSAGLLPSSSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KF+KVPEIYKEMESAGCTPDRKAREMLKSVTA+LEQRH
Sbjct: 481 KFSKVPEIYKEMESAGCTPDRKAREMLKSVTAVLEQRH 517

[Close]

BLAST of CsGy4G004260 vs. NCBI nr
Match: XP_038901793.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X3 [Benincasa hispida] >XP_038901802.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X3 [Benincasa hispida])

HSP 1 Score: 923 bits (2385), Expect = 0.0
Identity = 464/520 (89.23%), Postives = 486/520 (93.46%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM S FLPK+ IVSSFGGVFSD LL   S KC G+YMFD   +KLFRNN+L   SK  +
Sbjct: 1   MKMQSTFLPKSLIVSSFGGVFSDLLLNPRSIKCVGRYMFDDAALKLFRNNALKKGSKEAL 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDN IISSRWHGC DE ELSS+ CN LIRDYCKVG+VDSAMSLLAHMESVGLHA++ SYT
Sbjct: 61  DDNHIISSRWHGCRDEAELSSDLCNCLIRDYCKVGNVDSAMSLLAHMESVGLHASVASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGN+GRTLEADI+FQEM+SFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNLGRTLEADILFQEMLSFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYH NAGRLEDTWSIINEMK+KGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHANAGRLEDTWSIINEMKQKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGIS+DK IYNSI+DTFGKYG LSEALEVFKRMQQDGV+PDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISVDKCIYNSIVDTFGKYGQLSEALEVFKRMQQDGVMPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIF+TLIS LGEQGKWDVI QNLDSMKLRGHK+S
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFVTLISSLGEQGKWDVIKQNLDSMKLRGHKDS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
            LVYEILVDIYGQYGQFQDAEKCISALKSAGLL S SNFCIIANAFAQQGL EETVKVLQ
Sbjct: 361 GLVYEILVDIYGQYGQFQDAEKCISALKSAGLLPSASNFCIIANAFAQQGLSEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEA+GIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEADGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR 828
           KFAKVPEIYKEMESAGCTPDRKAREMLKSVT +LEQRHYR
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTVVLEQRHYR 520

[Close]

BLAST of CsGy4G004260 vs. NCBI nr
Match: XP_038901745.1 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038901752.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038901759.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038901767.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038901775.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida] >XP_038901783.1 pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 919 bits (2374), Expect = 0.0
Identity = 462/518 (89.19%), Postives = 484/518 (93.44%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM S FLPK+ IVSSFGGVFSD LL   S KC G+YMFD   +KLFRNN+L   SK  +
Sbjct: 1   MKMQSTFLPKSLIVSSFGGVFSDLLLNPRSIKCVGRYMFDDAALKLFRNNALKKGSKEAL 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDN IISSRWHGC DE ELSS+ CN LIRDYCKVG+VDSAMSLLAHMESVGLHA++ SYT
Sbjct: 61  DDNHIISSRWHGCRDEAELSSDLCNCLIRDYCKVGNVDSAMSLLAHMESVGLHASVASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGN+GRTLEADI+FQEM+SFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNLGRTLEADILFQEMLSFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYH NAGRLEDTWSIINEMK+KGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHANAGRLEDTWSIINEMKQKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGIS+DK IYNSI+DTFGKYG LSEALEVFKRMQQDGV+PDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISVDKCIYNSIVDTFGKYGQLSEALEVFKRMQQDGVMPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIF+TLIS LGEQGKWDVI QNLDSMKLRGHK+S
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFVTLISSLGEQGKWDVIKQNLDSMKLRGHKDS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
            LVYEILVDIYGQYGQFQDAEKCISALKSAGLL S SNFCIIANAFAQQGL EETVKVLQ
Sbjct: 361 GLVYEILVDIYGQYGQFQDAEKCISALKSAGLLPSASNFCIIANAFAQQGLSEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEA+GIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEADGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KFAKVPEIYKEMESAGCTPDRKAREMLKSVT +LEQRH
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTVVLEQRH 518

[Close]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL
Match: A0A0A0KZ91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025700 PE=4 SV=1)

HSP 1 Score: 1037 bits (2682), Expect = 0.0
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV
Sbjct: 1   MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT
Sbjct: 61  DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS
Sbjct: 301 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR 828
           KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRHYR 520

[Close]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL
Match: A0A5A7TTI3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004510 PE=4 SV=1)

HSP 1 Score: 971 bits (2510), Expect = 0.0
Identity = 491/518 (94.79%), Postives = 496/518 (95.75%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM SIFLPKAFIVSSFGG FSDHLL R SSK DGKY FDG I+K FRNN LN ASKA V
Sbjct: 1   MKMQSIFLPKAFIVSSFGG-FSDHLLHRDSSKFDGKYTFDGAILKFFRNNFLNLASKAAV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCIISSRWHGCIDEEELSSESCNRLI DYCKVG+VDSAMSLLAHMESVGLHATM SYT
Sbjct: 61  DDNCIISSRWHGCIDEEELSSESCNRLICDYCKVGNVDSAMSLLAHMESVGLHATMASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYG LSEALEVFKRMQQD VVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGQLSEALEVFKRMQQDDVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIFITLISFL EQGKWDVI QNLDSMKLRGHKNS
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFITLISFLSEQGKWDVIKQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQD EKCISALKSAGLL S SNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDGEKCISALKSAGLLPSSSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KFAKVPEIYKEMESAGCTPDRK REMLKSVTA+LEQRH
Sbjct: 481 KFAKVPEIYKEMESAGCTPDRKVREMLKSVTAVLEQRH 517

[Close]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL
Match: A0A1S4E032 (pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103494438 PE=4 SV=1)

HSP 1 Score: 968 bits (2502), Expect = 0.0
Identity = 489/518 (94.40%), Postives = 496/518 (95.75%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM SIFLPKAFIVSSFGG FSDHLL R SSK DG Y FDG I+K FRNN LN ASKA V
Sbjct: 1   MKMQSIFLPKAFIVSSFGG-FSDHLLHRDSSKFDGIYTFDGAILKFFRNNFLNLASKAAV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCI+SSRWHGCIDEEELSSESCNRLI DYCKVG+VDSAMSLLAHMESVGLHATM SYT
Sbjct: 61  DDNCIVSSRWHGCIDEEELSSESCNRLICDYCKVGNVDSAMSLLAHMESVGLHATMASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYG LSEALEVFKRMQQD VVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGQLSEALEVFKRMQQDDVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIFITLISFL EQGKWDVI QNLDSMKLRGHKNS
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFITLISFLSEQGKWDVIKQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQD EKCISALKSAGLL S SNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDGEKCISALKSAGLLPSSSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KF+KVPEIYKEMESAGCTPDRKAREMLKSVTA+LEQRH
Sbjct: 481 KFSKVPEIYKEMESAGCTPDRKAREMLKSVTAVLEQRH 517

[Close]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL
Match: A0A5D3CY36 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00230 PE=4 SV=1)

HSP 1 Score: 968 bits (2502), Expect = 0.0
Identity = 489/518 (94.40%), Postives = 496/518 (95.75%), Query Frame = 0


Query: 309 MKMHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVV 368
           MKM SIFLPKAFIVSSFGG FSDHLL R SSK DG Y FDG I+K FRNN LN ASKA V
Sbjct: 1   MKMQSIFLPKAFIVSSFGG-FSDHLLHRDSSKFDGIYTFDGAILKFFRNNFLNLASKAAV 60

Query: 369 DDNCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYT 428
           DDNCI+SSRWHGCIDEEELSSESCNRLI DYCKVG+VDSAMSLLAHMESVGLHATM SYT
Sbjct: 61  DDNCIVSSRWHGCIDEEELSSESCNRLICDYCKVGNVDSAMSLLAHMESVGLHATMASYT 120

Query: 429 YLIEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDL 488
           YLIEALGNVGRTLEADIIFQEMISFGCKPRT+VCNALLRGFLRKGLLDLASGV VLMSDL
Sbjct: 121 YLIEALGNVGRTLEADIIFQEMISFGCKPRTIVCNALLRGFLRKGLLDLASGVLVLMSDL 180

Query: 489 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 548
           DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA
Sbjct: 181 DIKKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKA 240

Query: 549 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQW 608
           VGIVDEIRKSGISMDKHIYNSIIDTFGKYG LSEALEVFKRMQQD VVPDITTWNSLIQW
Sbjct: 241 VGIVDEIRKSGISMDKHIYNSIIDTFGKYGQLSEALEVFKRMQQDDVVPDITTWNSLIQW 300

Query: 609 NCKSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNS 668
           NCK+GNLATALELFTDMQEQGMHPDPKIFITLISFL EQGKWDVI QNLDSMKLRGHKNS
Sbjct: 301 NCKAGNLATALELFTDMQEQGMHPDPKIFITLISFLSEQGKWDVIKQNLDSMKLRGHKNS 360

Query: 669 VLVYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQ 728
           VLVYEILVDIYGQYGQFQD EKCISALKSAGLL S SNFCIIANAFAQQGLCEETVKVLQ
Sbjct: 361 VLVYEILVDIYGQYGQFQDGEKCISALKSAGLLPSSSNFCIIANAFAQQGLCEETVKVLQ 420

Query: 729 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 788
           LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK
Sbjct: 421 LMEAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAK 480

Query: 789 KFAKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
           KF+KVPEIYKEMESAGCTPDRKAREMLKSVTA+LEQRH
Sbjct: 481 KFSKVPEIYKEMESAGCTPDRKAREMLKSVTAVLEQRH 517

[Close]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL
Match: A0A6J1E3F2 (pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430464 PE=4 SV=1)

HSP 1 Score: 895 bits (2312), Expect = 0.0
Identity = 447/516 (86.63%), Postives = 474/516 (91.86%), Query Frame = 0


Query: 311 MHSIFLPKAFIVSSFGGVFSDHLLQRGSSKCDGKYMFDGGIVKLFRNNSLNFASKAVVDD 370
           M SIFLPK FIV SFGGV+S  LL R SSKCDG+YMF   ++KLFR N L   SKA + D
Sbjct: 1   MQSIFLPKTFIVYSFGGVYSGTLLHRSSSKCDGRYMFGDAVLKLFRKNGLKKVSKAALYD 60

Query: 371 NCIISSRWHGCIDEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYL 430
           N  IS+RWHGC D+EELS + CN LIRDYCKVG+VD+AMSLL+HME+VGLHA++ SYTYL
Sbjct: 61  NYTISARWHGCKDQEELSGDLCNCLIRDYCKVGNVDAAMSLLSHMEAVGLHASVASYTYL 120

Query: 431 IEALGNVGRTLEADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDI 490
           IEA GNVGRTLEADI+FQEMISFG  PRT VCNALLRGFLRKGLLDLAS V VLMSDLDI
Sbjct: 121 IEAHGNVGRTLEADILFQEMISFGRMPRTTVCNALLRGFLRKGLLDLASDVLVLMSDLDI 180

Query: 491 KKNQETYEILLDYHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 550
           +KNQETYEILLDYH NAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG
Sbjct: 181 QKNQETYEILLDYHANAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVG 240

Query: 551 IVDEIRKSGISMDKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNC 610
           IVDEIRKSGIS+DKHIYNSIIDTFGKYG L EALEVFK+MQQDGV+PDITTWNSLIQWNC
Sbjct: 241 IVDEIRKSGISVDKHIYNSIIDTFGKYGQLPEALEVFKKMQQDGVMPDITTWNSLIQWNC 300

Query: 611 KSGNLATALELFTDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVL 670
           KSGNLATALELFTDMQEQGMHPDPKIFITLIS LGEQGKWD+I +NLDSMKLRGHKNS L
Sbjct: 301 KSGNLATALELFTDMQEQGMHPDPKIFITLISSLGEQGKWDIIKKNLDSMKLRGHKNSGL 360

Query: 671 VYEILVDIYGQYGQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLM 730
           VYEILVDIYGQYGQF+DAEKCISALKSAGLL S SNFCIIANAFA+QGLCEETVKVLQLM
Sbjct: 361 VYEILVDIYGQYGQFRDAEKCISALKSAGLLPSASNFCIIANAFARQGLCEETVKVLQLM 420

Query: 731 EAEGIEPNLVMLNVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKF 790
           EAEGIEPNLVMLNVLINAFAVAGRH EA+AIYHHI+EVGISPDVITYTTLMKA+IRAKKF
Sbjct: 421 EAEGIEPNLVMLNVLINAFAVAGRHLEAMAIYHHIVEVGISPDVITYTTLMKAYIRAKKF 480

Query: 791 AKVPEIYKEMESAGCTPDRKAREMLKSVTAILEQRH 826
            KVPEIYKEME AGCTPDRKAREMLKSVT +LEQRH
Sbjct: 481 HKVPEIYKEMERAGCTPDRKAREMLKSVTVVLEQRH 516

[Close]

BLAST of CsGy4G004260 vs. TAIR 10
Match: AT5G42310.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 350.1 bits (897), Expect = 4.8e-96
Identity = 175/442 (39.59%), Postives = 271/442 (61.31%), Query Frame = 0


Query: 383 DEEELSSESCNRLIRDYCKVGDVDSAMSLLAHMESVGLHATMTSYTYLIEALGNVGRTLE 442
           D+ EL  +  N +I  + K GD   A+ LL   ++ GL A   +   +I AL + GRTLE
Sbjct: 263 DKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLE 322

Query: 443 ADIIFQEMISFGCKPRTVVCNALLRGFLRKGLLDLASGVFVLMSDLDIKKNQETYEILLD 502
           A+ +F+E+   G KPRT   NALL+G+++ G L  A  +   M    +  ++ TY +L+D
Sbjct: 323 AEALFEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLID 382

Query: 503 YHVNAGRLEDTWSIINEMKRKGFELNSFVYSKVIVIYQNNGMWKKAVGIVDEIRKSGISM 562
            +VNAGR E    ++ EM+    + NSFV+S+++  +++ G W+K   ++ E++  G+  
Sbjct: 383 AYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442

Query: 563 DKHIYNSIIDTFGKYGHLSEALEVFKRMQQDGVVPDITTWNSLIQWNCKSGNLATALELF 622
           D+  YN +IDTFGK+  L  A+  F RM  +G+ PD  TWN+LI  +CK G    A E+F
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDCHCKHGRHIVAEEMF 502

Query: 623 TDMQEQGMHPDPKIFITLISFLGEQGKWDVINQNLDSMKLRGHKNSVLVYEILVDIYGQY 682
             M+ +G  P    +  +I+  G+Q +WD + + L  MK +G   +V+ +  LVD+YG+ 
Sbjct: 503 EAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKS 562

Query: 683 GQFQDAEKCISALKSAGLLASCSNFCIIANAFAQQGLCEETVKVLQLMEAEGIEPNLVML 742
           G+F DA +C+  +KS GL  S + +  + NA+AQ+GL E+ V   ++M ++G++P+L+ L
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622

Query: 743 NVLINAFAVAGRHSEALAIYHHIIEVGISPDVITYTTLMKAFIRAKKFAKVPEIYKEMES 802
           N LINAF    R +EA A+  ++ E G+ PDV+TYTTLMKA IR  KF KVP +Y+EM  
Sbjct: 623 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKALIRVDKFQKVPVVYEEMIM 682

Query: 803 AGCTPDRKAREMLKSVTAILEQ 825
           +GC PDRKAR ML+S    ++Q
Sbjct: 683 SGCKPDRKARSMLRSALRYMKQ 704

[Close]

BLAST of CsGy4G004260 vs. TAIR 10
Match: AT3G49010.1 (breast basic conserved 1 )

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-86
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK ++ELVK+T EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CsGy4G004260 vs. TAIR 10
Match: AT3G49010.2 (breast basic conserved 1 )

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-86
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK ++ELVK+T EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CsGy4G004260 vs. TAIR 10
Match: AT3G49010.3 (breast basic conserved 1 )

HSP 1 Score: 317.8 bits (813), Expect = 2.6e-86
Identity = 154/181 (85.08%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIP+GHF+KHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVR G+GF+LEELKAAGIPKKLAPTIGI+VDHRR+NRSLE LQ NVQRLKTYK 
Sbjct: 61  TLKYNMKVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKT 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+V+FPRRARK KAGDSTPEELANATQVQG YLPI REK ++ELVK+T EMKSFKA+DK+
Sbjct: 121 KLVIFPRRARKVKAGDSTPEELANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

[Close]

BLAST of CsGy4G004260 vs. TAIR 10
Match: AT5G23900.1 (Ribosomal protein L13e family protein )

HSP 1 Score: 313.5 bits (802), Expect = 5.0e-85
Identity = 152/181 (83.98%), Postives = 170/181 (93.92%), Query Frame = 0


Query: 1   MKHNNVIPSGHFRKHWQNYVRTWFNQPARKTRRRNARQEKAVKNFPRPTAGPLRPVVHGQ 60
           MKHNNVIPS HFRKHWQNYV+TWFNQPARKTRRR ARQ+KAVK FPRPT+GPLRPVVHGQ
Sbjct: 1   MKHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQ 60

Query: 61  TLKYNMKVRAGRGFSLEELKAAGIPKKLAPTIGISVDHRRRNRSLESLQANVQRLKTYKA 120
           TLKYNMKVRAG+GF+LEELK AGIPKKLAPTIGISVDHRR+NRSLE LQ+NVQRLKTYKA
Sbjct: 61  TLKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKA 120

Query: 121 KVVVFPRRARKFKAGDSTPEELANATQVQGPYLPIGREKASVELVKVTEEMKSFKAYDKL 180
           K+VVFPRR+R+ KAGDSTPEELANATQVQG Y+PI   KA++ELVK+T ++K+FKAYDK+
Sbjct: 121 KLVVFPRRSRQVKAGDSTPEELANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKI 180

Query: 181 R 182
           R
Sbjct: 181 R 181

The following BLAST results are available for this feature:

BLAST of CsGy4G004260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L844	6.7e-95	39.59	Pentatricopeptide repeat-containing protein At5g42310, chloroplastic OS=Arabidop...	[more]
A0A1D6IEG9	1.2e-91	40.57	Pentatricopeptide repeat-containing protein CRP1, chloroplastic OS=Zea mays OX=4...	[more]
Q84ZD2	4.5e-91	40.00	Pentatricopeptide repeat-containing protein CRP1 homolog, chloroplastic OS=Oryza...	[more]
P41127	3.7e-85	85.08	60S ribosomal protein L13-1 OS=Arabidopsis thaliana OX=3702 GN=RPL13B PE=1 SV=1	[more]
P41129	5.3e-84	84.53	60S ribosomal protein L13-2 OS=Brassica napus OX=3708 PE=2 SV=1	[more]

BLAST of CsGy4G004260 vs. NCBI nr


Match Name	Identity	Description
XP_011653107.1	100.00	pentatricopeptide repeat-containing protein At5g42310, chloroplastic isoform X1 ...	[more]
KAA0044695.1	94.79	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016901588.1	94.40	PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial-...	[more]
XP_038901793.1	89.23	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]
XP_038901745.1	89.19	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]

BLAST of CsGy4G004260 vs. ExPASy TrEMBL


Match Name	Identity	Description
A0A0A0KZ91	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025700 PE=4 SV=1	[more]
A0A5A7TTI3	94.79	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4E032	94.40	pentatricopeptide repeat-containing protein At5g42310, mitochondrial-like OS=Cuc...	[more]
A0A5D3CY36	94.40	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1E3F2	86.63	pentatricopeptide repeat-containing protein At5g42310, chloroplastic-like isofor...	[more]

BLAST of CsGy4G004260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G42310.1	4.8e-96	39.59	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT3G49010.1	2.6e-86	85.08	breast basic conserved 1	[more]
AT3G49010.2	2.6e-86	85.08	breast basic conserved 1	[more]
AT3G49010.3	2.6e-86	85.08	breast basic conserved 1	[more]
AT5G23900.1	5.0e-85	83.98	Ribosomal protein L13e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 657..827 e-value: 2.1E-31 score: 111.5
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 450..522 e-value: 2.6E-11 score: 45.4 coord: 379..449 e-value: 3.0E-11 score: 45.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 534..651 e-value: 2.9E-31 score: 110.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 737..785 e-value: 2.9E-9 score: 37.0 coord: 493..536 e-value: 1.4E-7 score: 31.6 coord: 597..641 e-value: 2.0E-9 score: 37.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 391..436 e-value: 7.5E-4 score: 19.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 566..595 e-value: 1.7E-6 score: 27.9 coord: 709..735 e-value: 0.73 score: 10.2 coord: 460..488 e-value: 0.047 score: 14.0
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 531..563 e-value: 0.0031 score: 15.6 coord: 566..599 e-value: 2.0E-9 score: 35.1 coord: 707..738 e-value: 8.0E-4 score: 17.4 coord: 601..633 e-value: 1.8E-6 score: 25.7 coord: 460..492 e-value: 0.0021 score: 16.1 coord: 426..457 e-value: 8.5E-5 score: 20.5 coord: 496..528 e-value: 2.6E-6 score: 25.3 coord: 741..774 e-value: 1.1E-5 score: 23.3 coord: 775..808 e-value: 1.0E-8 score: 32.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 738..772 score: 10.435215
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 703..737 score: 8.70333
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 423..457 score: 10.358486
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 598..632 score: 12.375365
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 388..422 score: 10.117337
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 773..807 score: 12.013642
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 563..597 score: 12.92343
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 528..562 score: 9.218511
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 493..527 score: 10.446177
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 6..182 e-value: 4.2E-76 score: 254.8
IPR001380	Ribosomal protein L13e	HAMAP	MF_00499	Ribosomal_L13e	coord: 44..127 score: 21.607061
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 356..827
None	No IPR available	PANTHER	PTHR47942:SF13	OS06G0710800 PROTEIN	coord: 356..827
IPR018256	Ribosomal protein L13e, conserved site	PROSITE	PS01104	RIBOSOMAL_L13E	coord: 69..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G004260.2	CsGy4G004260.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003735	structural constituent of ribosome