CsGy4G002355 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G002355
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDEAD-box ATP-dependent RNA helicase 10-like
LocationGy14Chr4: 1423236 .. 1423582 (+)
RNA-Seq ExpressionCsGy4G002355
SyntenyCsGy4G002355
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCGCAGAAGGTTCTTTCTACAGCTTGTACATTTACTTAATTCATTTCTTCCATTCAACTATTCTTTTTATTCAACCAGTGGCAAAGATAAATTTTGTTCTCATTGCTTTTAATATTGGTGTTGAATGAAAATTACACATCTTTCTGTATAAATATTAGGTAAGGTTTCAAGATGCACTCTGGCACTCATTTATGAAAAGGCACAAACATTGAAGCATTCCCATTACTTTGACGTTTGTGTCTTTTAG

mRNA sequence

ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCGCAGAAGGTAAGGTTTCAAGATGCACTCTGGCACTCATTTATGAAAAGGCACAAACATTGAAGCATTCCCATTACTTTGACGTTTGTGTCTTTTAG

Coding sequence (CDS)

ATGGAGCAAAACAGGGAAGAAGAGTTAAAGACGTTTAAGAGCTTGGGAACATGTGAGCAATTGGTGGAGGCATGCTGGAGTTCAGACTGGAAACCTCATGGCGCAGAAGGTAAGGTTTCAAGATGCACTCTGGCACTCATTTATGAAAAGGCACAAACATTGAAGCATTCCCATTACTTTGACGTTTGTGTCTTTTAG

Protein sequence

MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYFDVCVF*
Homology
BLAST of CsGy4G002355 vs. NCBI nr
Match: KGN52980.1 (hypothetical protein Csa_014600 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 1.93e-42
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF 60
          MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF
Sbjct: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF 60

Query: 61 DVCVF 65
          DVCVF
Sbjct: 61 DVCVF 65

BLAST of CsGy4G002355 vs. NCBI nr
Match: XP_022151346.1 (DEAD-box ATP-dependent RNA helicase 10-like [Momordica charantia])

HSP 1 Score: 55.1 bits (131), Expect = 1.02e-06
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFKSLG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDSEEEVKTFKSLGICEQLVEACESLGWKNPSKIQAAAIPHALEGK 48

BLAST of CsGy4G002355 vs. NCBI nr
Match: KAG6605763.1 (DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.5 bits (127), Expect = 3.61e-06
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFK LG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

BLAST of CsGy4G002355 vs. NCBI nr
Match: XP_022957788.1 (DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022957789.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022995218.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita maxima] >XP_022995219.1 DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita maxima] >KAG7035728.1 DEAD-box ATP-dependent RNA helicase 10 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 53.5 bits (127), Expect = 3.61e-06
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFK LG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

BLAST of CsGy4G002355 vs. NCBI nr
Match: XP_023534735.1 (DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 53.5 bits (127), Expect = 3.61e-06
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFK LG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

BLAST of CsGy4G002355 vs. ExPASy TrEMBL
Match: A0A0A0KTP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G008830 PE=4 SV=1)

HSP 1 Score: 141 bits (356), Expect = 9.33e-43
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF 60
          MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF
Sbjct: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWKPHGAEGKVSRCTLALIYEKAQTLKHSHYF 60

Query: 61 DVCVF 65
          DVCVF
Sbjct: 61 DVCVF 65

BLAST of CsGy4G002355 vs. ExPASy TrEMBL
Match: A0A6J1DED3 (DEAD-box ATP-dependent RNA helicase 10-like OS=Momordica charantia OX=3673 GN=LOC111019308 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.96e-07
Identity = 29/48 (60.42%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFKSLG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDSEEEVKTFKSLGICEQLVEACESLGWKNPSKIQAAAIPHALEGK 48

BLAST of CsGy4G002355 vs. ExPASy TrEMBL
Match: A0A6J1K797 (DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita maxima OX=3661 GN=LOC111490827 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.75e-06
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFK LG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

BLAST of CsGy4G002355 vs. ExPASy TrEMBL
Match: A0A6J1H304 (DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita moschata OX=3662 GN=LOC111459226 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.75e-06
Identity = 28/48 (58.33%), Postives = 30/48 (62.50%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTFK LG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFKDLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

BLAST of CsGy4G002355 vs. ExPASy TrEMBL
Match: A0A5D3C6L0 (DEAD-box ATP-dependent RNA helicase 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00720 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.75e-06
Identity = 28/48 (58.33%), Postives = 31/48 (64.58%), Query Frame = 0

Query: 1  MEQNREEELKTFKSLGTCEQLVEACWSSDWK----------PHGAEGK 38
          MEQ+ EEE+KTF+SLG CEQLVEAC S  WK          PH  EGK
Sbjct: 1  MEQDNEEEVKTFQSLGICEQLVEACDSLGWKNPSKIQAEAIPHALEGK 48

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN52980.11.93e-42100.00hypothetical protein Csa_014600 [Cucumis sativus][more]
XP_022151346.11.02e-0660.42DEAD-box ATP-dependent RNA helicase 10-like [Momordica charantia][more]
KAG6605763.13.61e-0658.33DEAD-box ATP-dependent RNA helicase 10, partial [Cucurbita argyrosperma subsp. s... [more]
XP_022957788.13.61e-0658.33DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita moschata] >XP_022957789.1... [more]
XP_023534735.13.61e-0658.33DEAD-box ATP-dependent RNA helicase 10-like [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
A0A0A0KTP09.33e-43100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G008830 PE=4 SV=1[more]
A0A6J1DED34.96e-0760.42DEAD-box ATP-dependent RNA helicase 10-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1K7971.75e-0658.33DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1H3041.75e-0658.33DEAD-box ATP-dependent RNA helicase 10-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
A0A5D3C6L01.75e-0658.33DEAD-box ATP-dependent RNA helicase 10 OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G002355.1CsGy4G002355.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003824 catalytic activity
molecular_function GO:1901363 heterocyclic compound binding
molecular_function GO:0097159 organic cyclic compound binding