CsGy4G001000 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G001000
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein of unknown function (DUF3511)
Location	Gy14Chr4: 618666 .. 618941 (+)
RNA-Seq Expression	CsGy4G001000
Synteny	CsGy4G001000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCCCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCAAGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

mRNA sequence

ATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCCCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCAAGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

Coding sequence (CDS)

ATGTCCGCCCGGAGGATCGAGATCGTCAGCGGCAAACACAACGGTGCACGCGCCGCCCCTCAGATCTACAGGTCGCCCAATCTGGATACGAACGGTAACCGCGTGGGGTCGGCCGCTACAGGGAAGCCGTGGGGGTTCGCTGACCCGGAGGCCAAGCGGAGGAAGAGGATCGCTAAGTATAAAGTCTATACCGTTGAAGGGAGAGTGAAGGATTCGCTTCGGAAGGGACTACGGTGGATCAAGAATAAGTGCTCTCGTATTGTCCATGGATTTTGA

Protein sequence

MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF*

Homology

[Close]

BLAST of CsGy4G001000 vs. NCBI nr
Match: KGN52839.1 (hypothetical protein Csa_014389 [Cucumis sativus])

HSP 1 Score: 188 bits (477), Expect = 4.18e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60
          MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY
Sbjct: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60

Query: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
          KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF
Sbjct: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91

[Close]

BLAST of CsGy4G001000 vs. NCBI nr
Match: KAA0044404.1 (hypothetical protein E6C27_scaffold46G001330 [Cucumis melo var. makuwa] >TYK29531.1 hypothetical protein E5676_scaffold655G001340 [Cucumis melo var. makuwa])

HSP 1 Score: 181 bits (459), Expect = 2.64e-57
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 2  SARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKYK 61
          SARRIEIVSGKHNGAR APQIYRSPNLDTNGNRVGSAA GKPWGFADPEAKRRKRIAKYK
Sbjct: 6  SARRIEIVSGKHNGARPAPQIYRSPNLDTNGNRVGSAAAGKPWGFADPEAKRRKRIAKYK 65

Query: 62 VYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
          VYTVEGRVKDSLRKGLRWIKN+CSRIVHGF
Sbjct: 66 VYTVEGRVKDSLRKGLRWIKNRCSRIVHGF 95

[Close]

BLAST of CsGy4G001000 vs. NCBI nr
Match: XP_022998630.1 (uncharacterized protein LOC111493216 [Cucurbita maxima])

HSP 1 Score: 134 bits (337), Expect = 1.24e-38
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSA-ATGKPWGFADPEAKRRKRIAKYKV 63
           RR+EIVSGK  G   + QIY SPNL T  NRVGSA A  KPW F DPE KRRKRIAKYKV
Sbjct: 12  RRVEIVSGKRYGGDGSCQIYGSPNLATTANRVGSASAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CsGy4G001000 vs. NCBI nr
Match: XP_023524599.1 (uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 130 bits (328), Expect = 2.93e-37
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 6   IEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATG-KPWGFADPEAKRRKRIAKYKVYT 65
           +EIVSGK  G   + QIY SPNL T+ NRVGSAA   KPW F DPE KRRKRIAKYKVYT
Sbjct: 14  VEIVSGKRYGGDGSCQIYGSPNLATSTNRVGSAAAAAKPWRFGDPEGKRRKRIAKYKVYT 73

Query: 66  VEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           VEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 74  VEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CsGy4G001000 vs. NCBI nr
Match: XP_022949041.1 (uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothetical protein SDJN03_00288, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 130 bits (326), Expect = 5.91e-37
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVG-SAATGKPWGFADPEAKRRKRIAKYKV 63
           R +EIVSGK  G   + QIY SPNL T  NRVG +AA  KPW F DPE KRRKRIAKYKV
Sbjct: 12  RSVEIVSGKRYGGDGSCQIYGSPNLATTTNRVGPAAAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL
Match: A0A0A0KV97 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002560 PE=4 SV=1)

HSP 1 Score: 188 bits (477), Expect = 2.02e-60
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60
          MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY
Sbjct: 1  MSARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 60

Query: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
          KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF
Sbjct: 61 KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91

[Close]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL
Match: A0A5A7TMP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001340 PE=4 SV=1)

HSP 1 Score: 181 bits (459), Expect = 1.28e-57
Identity = 87/90 (96.67%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 2  SARRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKYK 61
          SARRIEIVSGKHNGAR APQIYRSPNLDTNGNRVGSAA GKPWGFADPEAKRRKRIAKYK
Sbjct: 6  SARRIEIVSGKHNGARPAPQIYRSPNLDTNGNRVGSAAAGKPWGFADPEAKRRKRIAKYK 65

Query: 62 VYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
          VYTVEGRVKDSLRKGLRWIKN+CSRIVHGF
Sbjct: 66 VYTVEGRVKDSLRKGLRWIKNRCSRIVHGF 95

[Close]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL
Match: A0A6J1KD11 (uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216 PE=4 SV=1)

HSP 1 Score: 134 bits (337), Expect = 6.03e-39
Identity = 67/89 (75.28%), Postives = 72/89 (80.90%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVGSA-ATGKPWGFADPEAKRRKRIAKYKV 63
           RR+EIVSGK  G   + QIY SPNL T  NRVGSA A  KPW F DPE KRRKRIAKYKV
Sbjct: 12  RRVEIVSGKRYGGDGSCQIYGSPNLATTANRVGSASAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL
Match: A0A6J1GAV9 (uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC111452504 PE=4 SV=1)

HSP 1 Score: 130 bits (326), Expect = 2.86e-37
Identity = 65/89 (73.03%), Postives = 71/89 (79.78%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIYRSPNLDTNGNRVG-SAATGKPWGFADPEAKRRKRIAKYKV 63
           R +EIVSGK  G   + QIY SPNL T  NRVG +AA  KPW F DPE KRRKRIAKYKV
Sbjct: 12  RSVEIVSGKRYGGDGSCQIYGSPNLATTTNRVGPAAAAAKPWRFGDPEGKRRKRIAKYKV 71

Query: 64  YTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           YTVEG+VKDSLRKGL+WIK KCSRIVHG+
Sbjct: 72  YTVEGKVKDSLRKGLQWIKTKCSRIVHGY 100

[Close]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL
Match: A0A1R3H0Q6 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22163 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 8.78e-31
Identity = 61/94 (64.89%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 4   RRIEIVSGKHNGARAAPQIY----RSPNLDTNGNRV--GSAATGKPWGFADPEAKRRKRI 63
           RR+EIVSGK +      QI+    RSP+L    NR    S  T KPWGF DPE KR+KRI
Sbjct: 15  RRMEIVSGKSSSI-GGNQIFSGRSRSPDLQQAQNRTTRASQGTSKPWGFTDPEMKRKKRI 74

Query: 64  AKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 91
           AKYKVYTVEG+VK SLRKGLRWIKNKCS+IVHG+
Sbjct: 75  AKYKVYTVEGKVKSSLRKGLRWIKNKCSQIVHGY 107

[Close]

BLAST of CsGy4G001000 vs. TAIR 10
Match: AT2G47480.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 84.7 bits (208), Expect = 4.2e-17
Identity = 45/91 (49.45%), Postives = 57/91 (62.64%), Query Frame = 0


Query: 4   RRIEIVSGKHN---GARAAPQIYRSPNLDTNGNRVGSAATGKPWGFADPEAKRRKRIAKY 63
           RR EIVSGK N   G R  P     P       R  ++++ +  G +D E KR+KRIA+Y
Sbjct: 20  RRKEIVSGKRNQIYGTRDYPPSLPPPPGKVAAGRSNASSSLRIGGLSDAEMKRKKRIARY 79

Query: 64  KVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           K YTVEG+VK +L+ G RWIKNKC +IVH F
Sbjct: 80  KAYTVEGKVKSTLKNGFRWIKNKCCQIVHRF 110

[Close]

BLAST of CsGy4G001000 vs. TAIR 10
Match: AT3G62640.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 73.6 bits (179), Expect = 9.6e-14
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 0


Query: 6   IEIVSGKHNGARAAPQIYR----SPNLDTN-----GNRVGSAATGKPWGFADPEAKRRKR 65
           ++IV+GK  G     Q+Y     SP    +     G+   +  T  PW   D E KR+KR
Sbjct: 17  MDIVNGKGYGVGGTTQVYSTRPDSPKFQPSIPPPPGSTSKTRTTATPWRLIDAETKRKKR 76

Query: 66  IAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHG 91
           IA YK Y +EG+VK +++KG  WIK++ S I+HG
Sbjct: 77  IATYKTYALEGKVKSTVKKGFHWIKDRYSHIIHG 110

[Close]

BLAST of CsGy4G001000 vs. TAIR 10
Match: AT2G19460.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 24/54 (44.44%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 36  GSAATGKPWGFADPEAKRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVH 90
           G +++   WGF DP+ +R+KR+  Y+ YTVEG++K S RK  +WIK+KC+++++
Sbjct: 63  GRSSSSSSWGFVDPDLQRKKRVVSYRAYTVEGKLKGSFRKSFKWIKDKCNKLLN 116

[Close]

BLAST of CsGy4G001000 vs. TAIR 10
Match: AT5G11970.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-12
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 0


Query: 37  SAATGKPWGFADPEAKRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHGF 92
           S A  K WG  DPE +R+KR+A YK+Y VEG+VK S R   RW+K + +++V+G+
Sbjct: 50  SIARSKSWGITDPELQRKKRVASYKMYGVEGKVKGSFRNSFRWLKQRYTQVVYGW 104

[Close]

BLAST of CsGy4G001000 vs. TAIR 10
Match: AT3G05725.1 (Protein of unknown function (DUF3511) )

HSP 1 Score: 65.1 bits (157), Expect = 3.4e-11
Identity = 27/49 (55.10%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 42  KPWGFADPEAKRRKRIAKYKVYTVEGRVKDSLRKGLRWIKNKCSRIVHG 91
           K W + DPE KR++R+AKYK+Y+ EG++K +LRK  +WIK +CS+I+HG
Sbjct: 76  KGW-WNDPEIKRKRRVAKYKLYSAEGKMKITLRKSYKWIKIQCSKIIHG 123

The following BLAST results are available for this feature:

BLAST of CsGy4G001000 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy4G001000 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52839.1	4.18e-60	100.00	hypothetical protein Csa_014389 [Cucumis sativus]	[more]
KAA0044404.1	2.64e-57	96.67	hypothetical protein E6C27_scaffold46G001330 [Cucumis melo var. makuwa] >TYK2953...	[more]
XP_022998630.1	1.24e-38	75.28	uncharacterized protein LOC111493216 [Cucurbita maxima]	[more]
XP_023524599.1	2.93e-37	74.71	uncharacterized protein LOC111788494 [Cucurbita pepo subsp. pepo]	[more]
XP_022949041.1	5.91e-37	73.03	uncharacterized protein LOC111452504 [Cucurbita moschata] >KAG6606946.1 hypothet...	[more]

BLAST of CsGy4G001000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KV97	2.02e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G002560 PE=4 SV=1	[more]
A0A5A7TMP6	1.28e-57	96.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1KD11	6.03e-39	75.28	uncharacterized protein LOC111493216 OS=Cucurbita maxima OX=3661 GN=LOC111493216...	[more]
A0A6J1GAV9	2.86e-37	73.03	uncharacterized protein LOC111452504 OS=Cucurbita moschata OX=3662 GN=LOC1114525...	[more]
A0A1R3H0Q6	8.78e-31	64.89	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_22163 PE=4 ...	[more]

BLAST of CsGy4G001000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47480.1	4.2e-17	49.45	Protein of unknown function (DUF3511)	[more]
AT3G62640.1	9.6e-14	39.36	Protein of unknown function (DUF3511)	[more]
AT2G19460.1	3.1e-12	44.44	Protein of unknown function (DUF3511)	[more]
AT5G11970.1	6.9e-12	49.09	Protein of unknown function (DUF3511)	[more]
AT3G05725.1	3.4e-11	55.10	Protein of unknown function (DUF3511)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021899	Protein of unknown function DUF3511	PFAM	PF12023	DUF3511	coord: 46..90 e-value: 2.0E-26 score: 91.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..47
None	No IPR available	PANTHER	PTHR33193	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 3..91
None	No IPR available	PANTHER	PTHR33193:SF13	DOMAIN PROTEIN, PUTATIVE (DUF3511)-RELATED	coord: 3..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G001000.1	CsGy4G001000.1	mRNA