CsGy4G000620 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G000620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	Gy14Chr4: 362821 .. 368616 (-)
RNA-Seq Expression	CsGy4G000620
Synteny	CsGy4G000620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGTTAAACACTAATACATATAAAACCTTTAAGTTCGATGTTGATAATAGGATCGAATTTACAAATGGATATTTGAGTGATACAAAAGTTGAGACTTTTTAAGTTAATGGGTGGAGGTGTGTGGTATACGCGCGGTTCGTTCGTTCATTCCTTCATCTTACTTTCTTCTTCATCCTTTTGTGTTGGAATTGGATATTACATTTTTTGTTTTCGGCCATGTGAGCGTGAGGTCTCCAAACTCCCGACCTAAACTCTCCAATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCGTCTCTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTGTGCGTTCTTCCCTTCTTTCATTTAATTCCATTCTCTTTTCAAATGGTTATTGCTTAATTTTAGAATTCAAACCATGGTAACTTCTTTGGAATTTTTTGTGGACTTTGGCTCTGTATGCTAATGAAGAACCCACGCAAAATAAACTAATTTTTAAGATGGAGTTTACTTGAACTTTCATGCTTTTGTCCATTTAGTCCCCATTGAGAGTTTAAAGACATAATGTAAATTTCTTTAAGTACAGCCGCCAATTGGATAGAAAATTCAATCTCATCGGTTCTCAACTAACAAAAGTTTCCAATCGGGGGCTAATATAAATACTTCCGTGGTTCTGAGTACAAATTCATCAATCCAAATCTAATAAATTAGGGGAAAAAATGCATCACTTTAGTTTGTTAGAATCAAAGATATCAGGGTTTGTGGTTTTTGCAGATCAGATGAGGATATTTTTGGTATTAGATATGCGGGGGAGAAAGAAGAAGGGAAAATATTTGGAGAAATACTGTGATAAAGTTTAGAGGGGGAAGTAGAAGAGTCTCATGCTTTTCATTTTTCATCAACAAATGTGATTTCATAGTGGCCTAGAGAGTACTGGGAGGTGGTTTGGGATATTGTTAGACTTAATACTTATTTTTGAGCTTATGTTGCTAGGATTTTTGTAATTGACAGCTACGTCTTATTCTTTTGGATTGGATTCTCTTCCATTTTGCTAGCTTTTGCTTCGACCTCTTCTGCTGGGTTGTATGCCCTACCCCTAGTATATTCTTTCATTTTTCCCATGAAAACTCAATTCCTCATAAACATTAAAGTAATAAAGGCCTGGAGGGTATTAATGGCTGTCAGAACCATATTATTAGTTTTGGGTGAGTGCATTGCATATTGAAAGACTGTTTATGCTAAAATCAAAAGCTTCTAAATTTTATTGAGATATTTTAGTTAAAACCCATAAAGCCATTAAAGTTAGTGGAGTTCGAAAAATTCATTCTAATTAGTAGAAATCTTAGAAGATCAAAGTTGCTAAATTCCTTATCCAAAGACGGCCTAGCCGATTTTAAAAAAAAATAAATTTAATTTAGGTCATTTAACTTATCTTTTTATCCCTGCAAATTGATGTCATTCTTTTCTTCCTTTCTCGTTTCTTTGATTTTGGCAGAAATGTTCTCTTAGGATTAGTTTTTTAACATTTGCAAGTTGCGTCAAATTCCAAATAAATTTTAGCGTCACAATGCCACCATAAACTTCCAAATAACTAAGTTGTCATTATATTTTCCTCAACTCTTGCAATGTGATGGATGCTATCATGCATCACAGAGCCTTCAAGATTCTTAATTCTTGTACTATTAAACACTTACGGAAGACTTTGTTGTCTTGGTAATTTTGTTTAATCTCCAAAGATTCATTTGCTTGAGGGGACCAGTGTTTACAGTCATGTTCTATTTCCGCTAAACAGTGGCTTCTGATATTTGTTTTCTAATTCTGTTCCTATTTAGTTTGTAAGAAGTGTGTGGGTACATTTCACAAAGCAATGGATATTTCAGGTCAAAGAAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGGTATGCTTAAAGGTCTCTATTTTTTACTTATTAACATAGCTTCTTTCTTTATTAGAAAACGAATCCTATAGTTGAATTGCTCATCCTGCTTTGATCCTGGTTAATGGACTTAATTTACTGCTTCCTTTAAATCGCTTTTAGACTTTCATGGTTTATTTATTTTTCATTATTAGTATTTTGAGGCGGGGATTTCATTTTTACTTTTATAGTGTAAAAGGGTTTCTTTTTTGGAAAAGTTAAAATTTTGATTCGGTAAGGATGACGAATTGTGAACTTCTGAATGTTTTGAGTTAGTGGGGAAGGAAAGAAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGTTTGTCCCTAAATGCTTCTCTCTTCATCTTGTCATCTTCAACTTCTTTTTTTCTCCATAACCTCCTCGAGTATCATAATATTTTAACACTAATAGATGACTGTTCAATTTATGGATTTGAAATTACCAATTCGACTATCTTTCTGAATAATGTTGGTGTCCAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTACATCTTAATTTGTGGTTTCAGTTAAAGGATATAAGTATAGAGTTACATGTTCACTATGGTGAGGTAGCTGAAATACTAATTTCGGATCAGCATTAAACAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTTATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTGAGTATGATTATTCATCTTACCCCTTAACAACTCCATCAATGAATGGCAAGTCCAACTTTCTTATTCTATGGTTGTTCACTCTCTTTCCCCTTCTGATTATTTCATTTGATTTGCCCATTTTGCCTTCATGTCCCATTGCCCCTAACTCATTACCATGGTGCCTTGCCCTTGACCCTTTTTGCTGGAATCAACGTTTCAGTTATCGTTCATGCTGGTTCTTCTTGCTTCTGTAACAATATCCCTACACCTTCCACTAAGGCTGCTATTATCTGTTCAATAATAAAATCCTCTGGACATACTTTGCTGATATTCCTAGTCGTGCTCTATTGTTTTGAGTCGGTCATCCGTCATGTAAATAATGCTTTTCATAAGACAAATGAAAGGCTAGTGGTACAAGCTATTTTAAGAGACGGGTTTAGAGAGGAACAGAAGGTTTTTGTTGGTAGAAATATATACATGGTGGGAGTTGCTGGAATAGTTTGTTTTTTGTATCCTCTTTTCCGTCTTCAGTGTCTTCTTGATTTTGGATATTCATCTATCCCTGATTTTAGCCCAAGAAAACATCTCTCCTCTACAAAAATTTTCTTTTCTTTTCTTGTTGGCTTTAATCACACAACCCTCTTTGTGTGCCCTCCTTCATTGAATTTCATGTTTACAATAAACCAAAGTTAGCTACTTTTCTTGGATGATATTGCCTTATGTACATTTTTGCATTCCTTAAAATCAATTTACGTTGCAAGTAAGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGTAAGTAAGATCAATTTGTTTCTATTTTGTCCATTTGTTCAAGGATATGTTTTGAGTTTTGCTGTTGTTTTGTTCATGTTCCAATAGAAAATTTGTAAGTTAATCGGTAAATTCTCTTGTTCTCATGGAACTCTTGTAGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGGTAAGTCTATGCCTGTCTTGGAGCATGCTTTGTCCCGCCATCTAATTTTCTTGTTAGTTTATATAGTGTTCTTTGATGTCCATCATCTAATCCATTGATATCGAACTAACATGAAGAAAGATCTCTAGCAATTATGCCTCTGAACCTTTTTTCCCCCTTCAAAAGTTGTAATTTTGTTTATAGCGAAACAGAAACCATCCATTTATGCATTGAAATGGAACACAAAAGATGTTCTTATTGGATAACATGCATTCATAGATTAGATGTTCCAAAGTTCTGTTGTCTCGCTAATATCATGGAGACAATTAAATTATCTGGTTGAATGAATATGATATTGTATTTTCCACTCTGGATTATAACTTATATTTGTTTCCTGAATTAGTTGGATAAGAAACCAGCAGGAATCCGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCTGGGAGAGTAAGTTCATACCAAGAAAATTATCTTCTTGATTCTAATGGAAACACATATAAGTATACTTTTCGTCTCATCTTGGAGATCCAAAACATGTTAGCAGTCAACTTTTTGATTTAGAATATAGTACCTTCTTCTACATACATATGTTCTTGTTCAAGTTCTTTTGAAGTTAAAAAGAACCCGTGAGGATCTTGCGAACTTTTTCCTCATTTTTGGTGATGATATGCAGGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGAGAAAAACAGAATTGACATACATACACCGTGGCAACTATCAATGGCGTCACTTTTGCTACCCGTTCAACTTCCACAGCAATACCCAGAAGAGTAAACTGTCTAGTAATACATAGTCTTAGCTAGTTGTTTTTGTAACTATAAATGTGTTTGGAGGATTGGATGGGTGATTGATCCAAACCTGAGACCTTTCTGTTCTATTTAAATTCATGTTCCCATCTCTTCAAAGTCCAAAAGAAGATGATAATCCTTTCGGGAATTCAATTGATTTCTTTGGATTAGAGTTCATTGTTTCGTCTATAATTGATTTAGGTGGTTGACTCTAAAAGGCCTTGAAAGATTCAAAGAGATTAGATGGGTCATTGGGGCAATAGATTTTGAGTTTAAAGTAATCAGTTGGTGCACTCTCTCTTTCTTGAATTTTGCTAACTTTGCTTTCTTGAACAACCACATTATCTTTTCAACCAAACTTCTAGAGACACTGAAATTTGCAATTCAACCTCGTAAATGAGGTTCATATTTGAAATCAAAGTTTAATTCTTTTTCATATTTCTAATAATGCCCTCAACTACTCTTTTCGGAAAATATGCATCACAAGAATGGAACGGATGTTTTTCTAGAAGGGAATATAAGTGTAG

mRNA sequence

CAAAGTTAAACACTAATACATATAAAACCTTTAAGTTCGATGTTGATAATAGGATCGAATTTACAAATGGATATTTGAGTGATACAAAAGTTGAGACTTTTTAAGTTAATGGGTGGAGGTGTGTGGTATACGCGCGGTTCGTTCGTTCATTCCTTCATCTTACTTTCTTCTTCATCCTTTTGTGTTGGAATTGGATATTACATTTTTTGTTTTCGGCCATGTGAGCGTGAGGTCTCCAAACTCCCGACCTAAACTCTCCAATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCGTCTCTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTTATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAAACCAGCAGGAATCCGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCTGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGAGAAAAACAGAATTGACATACATACACCGTGGCAACTATCAATGGCGTCACTTTTGCTACCCGTTCAACTTCCACAGCAATACCCAGAAGAGTAAACTGTCTAGTAATACATAGTCTTAGCTAGTTGTTTTTGTAACTATAAATGTGTTTGGAGGATTGGATGGGTGATTGATCCAAACCTGAGACCTTTCTGTTCTATTTAAATTCATGTTCCCATCTCTTCAAAGTCCAAAAGAAGATGATAATCCTTTCGGGAATTCAATTGATTTCTTTGGATTAGAGTTCATTGTTTCGTCTATAATTGATTTAGGTGGTTGACTCTAAAAGGCCTTGAAAGATTCAAAGAGATTAGATGGGTCATTGGGGCAATAGATTTTGAGTTTAAAGTAATCAGTTGGTGCACTCTCTCTTTCTTGAATTTTGCTAACTTTGCTTTCTTGAACAACCACATTATCTTTTCAACCAAACTTCTAGAGACACTGAAATTTGCAATTCAACCTCGTAAATGAGGTTCATATTTGAAATCAAAGTTTAATTCTTTTTCATATTTCTAATAATGCCCTCAACTACTCTTTTCGGAAAATATGCATCACAAGAATGGAACGGATGTTTTTCTAGAAGGGAATATAAGTGTAG

Coding sequence (CDS)

ATGGCTATGGCTACTCTTCCTCTGTTCCACCACCTCCCCACCCTTTCAAACCCCAAATCACTCACCATTCTCAGGCCCCGGTTACCCACTTCTCAAAGAACTTTCCGTCTCTCTATTCTCTCTTGCTCTTCTACTTCCCAGTCCCCAGAAGCTAATCTCCAATCTGCAGAGTCCTGTGTCAATTTCGGTCTCCAGCTCTTCTCTAAAGGACGGGTCAAAGAAGCTTTGGTCCAGTTTGAAGCAGCTCTGAATATGGATCCCAACCCAATGGAGGCTCAAGCTGCTTTGTACAATAAAGCATGCTGTCATGCCTATCGTGGGGAAGGAAAGAAAGCCGCTGACTGTCTGCGTGTCGCATTAAGAGAATATAACCTGAAATTTGGCACCATTCTGAATGATCCTGACTTGGCCTCATTCAGAGCTCTTCCTGAATTCAAGGAATTGCAAGAAGAGGCTAGGATGGGAGGAGAGGATATAGGATACGGTTTTCGAAGAGATCTTAAACTCATTAGTGAAGTACAAGCACCTTTTCGTGGGGTTCGGAAGTTCTTTTATGTGGCACTATCTGCAGCAGCTGGAATTTCATTGCTGTTTAACATACCCAGGTTATTTCGTGCTATTCAAGGTGGTGATGGAGCTCCTGATGTTTGGGAAACTGCTGGAAATTTAGCTGTTAATGTTGGAGGTATTATTGTTTTTGTGGCATTATTTTTATGGGACAACAAGAAAGAAGAGGAACAGCTTGCACAAATATCAAGAAACGAAACGTTATCGAGGTTGCCTCTACGTCTTTCCACCAATCGGATTGTTGAACTTGTACAGCTTCGAGATACTGTAAGACCGGTCATTTTAGCTGGGAAAAAGGAGACTGTTTCTTCAGCCATTCAAAAGGCAGAAAGGTTCAGAACTGAGCTCCTTAGACGAGGTGTGCTCTTAGTTCCTGTCATATGGGGTGAAGGTAGGGAACCCCAAATAGAAAAGAAAGGGTTTGGTGCTCCAACCACCGCTGCTGCTGCTGCTCTGCCATCTATTGGGGAAGATTTTGAGAAACGAGCTCAGTCTATAACTGCAAAATCGAAGTTGAAAGCTGAAATTCGATTCAGGGCTGAGGTTATATCACCTGCAGAATGGGAAAGTTGGATAAGAAACCAGCAGGAATCCGAAGGGGTTACTCCTGGTGAGGATGTCTACATAATATTGCGATTGGATGGTCGAGTTCGAAGATCTGGGAGAGGGATGCCTGACTGGCAAAAAATTATTGAAGAATTACCACCAATGGAAGCTCTTCTAAGCAAGCTAGAAAAATGA

Protein sequence

MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK*

Homology

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BLAST of CsGy4G000620 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 609.4 bits (1570), Expect = 3.2e-173
Identity = 317/454 (69.82%), Postives = 374/454 (82.38%), Query Frame = 0


Query: 1   MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPE 60
           MA+AT P L  H P  +SN  S +   RP LP        S+R +   +   +S+S SP 
Sbjct: 1   MAVATAPSLNRHFPRRISNLYSRVKQRRPWLPPGDATLFNSRRNWDSHLFVYASSSSSPS 60

Query: 61  ANLQS---------AESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKAC 120
           ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKAC
Sbjct: 61  SSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKAC 120

Query: 121 CHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGY 180
           CHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG 
Sbjct: 121 CHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGD 180

Query: 181 GFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAG 240
            FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET G
Sbjct: 181 NFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTG 240

Query: 241 NLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP 300
           N A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Sbjct: 241 NAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRP 300

Query: 301 VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAAL 360
           VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +L
Sbjct: 301 VILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGA-SSKAATSL 360

Query: 361 PSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILR 420
           PSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR+QQ SEGV PG+DVYIILR
Sbjct: 361 PSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILR 420

Query: 421 LDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK 436
           LDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Sbjct: 421 LDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

[Close]

BLAST of CsGy4G000620 vs. NCBI nr
Match: XP_004152258.2 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN52798.1 hypothetical protein Csa_014443 [Cucumis sativus])

HSP 1 Score: 845 bits (2183), Expect = 9.62e-309
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV
Sbjct: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD
Sbjct: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLEK
Sbjct: 421 EELPPMEALLSKLEK 435

[Close]

BLAST of CsGy4G000620 vs. NCBI nr
Match: XP_008454363.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis melo] >KAA0044367.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYK29495.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 822 bits (2122), Expect = 1.83e-299
Identity = 424/435 (97.47%), Postives = 428/435 (98.39%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCV
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           R+FFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD
Sbjct: 181 RRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLEK
Sbjct: 421 EELPPMEALLSKLEK 434

[Close]

BLAST of CsGy4G000620 vs. NCBI nr
Match: XP_038905239.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 793 bits (2049), Expect = 2.44e-288
Identity = 411/435 (94.48%), Postives = 421/435 (96.78%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHL T S+PKS TILRPRL TSQR F +SIL  SSTSQSPEANL+SAESCV
Sbjct: 1   MAMATLPLFHHLLTFSSPKSATILRPRLLTSQRAFHVSILCFSSTSQSPEANLESAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           R+FF VALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGI+VFVALFLWD
Sbjct: 181 RRFFSVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIVVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQL+QISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLSQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP T AAA LPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPATPAAA-LPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEV+SPAEWESWIR+QQ+SE VTPGEDVYIILRLDGRVRRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVVSPAEWESWIRDQQKSEEVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLE+
Sbjct: 421 EELPPMEALLSKLER 434

[Close]

BLAST of CsGy4G000620 vs. NCBI nr
Match: XP_022983449.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima])

HSP 1 Score: 775 bits (2000), Expect = 8.60e-281
Identity = 398/437 (91.08%), Postives = 418/437 (95.65%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAES 60
           + MATLP+FH L TLSNPKS TILR RLPTS  QR F +SIL CSSTSQSPE N++SAES
Sbjct: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62

Query: 61  CVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 120
            VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYNKACCHAYRGEGKKAADCLRV
Sbjct: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122

Query: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182

Query: 181 GVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240
           GVR+FFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242

Query: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302

Query: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAK 360
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAK
Sbjct: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362

Query: 361 SKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 420
           SKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK
Sbjct: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422

Query: 421 IIEELPPMEALLSKLEK 435
           IIEELPPM+ALLSKLE+
Sbjct: 423 IIEELPPMDALLSKLER 439

[Close]

BLAST of CsGy4G000620 vs. NCBI nr
Match: XP_022143429.1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 773 bits (1996), Expect = 3.37e-280
Identity = 398/439 (90.66%), Postives = 415/439 (94.53%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFRLSILSCSSTSQSPEANLQSA 60
           MA+ATLPL+HHL   SNPKS T LRPRLPTS     + F LSI  CSSTSQSPEAN+++A
Sbjct: 1   MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETA 60

Query: 61  ESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA YNKACCHAYRGEGKKAADCL
Sbjct: 61  ESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVAL 240
           FRGVRKFFYVALSAAAGISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VAL
Sbjct: 181 FRGVRKFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT A A  LPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAV-LPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMEALLSKLEK 435
            KIIEELPPMEALLSKLE+
Sbjct: 421 PKIIEELPPMEALLSKLER 438

[Close]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL
Match: A0A0A0KT96 (TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001650 PE=4 SV=1)

HSP 1 Score: 845 bits (2183), Expect = 4.66e-309
Identity = 435/435 (100.00%), Postives = 435/435 (100.00%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV
Sbjct: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD
Sbjct: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLEK
Sbjct: 421 EELPPMEALLSKLEK 435

[Close]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL
Match: A0A5A7TR76 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00940 PE=4 SV=1)

HSP 1 Score: 822 bits (2122), Expect = 8.88e-300
Identity = 424/435 (97.47%), Postives = 428/435 (98.39%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCV
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           R+FFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD
Sbjct: 181 RRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLEK
Sbjct: 421 EELPPMEALLSKLEK 434

[Close]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL
Match: A0A1S3BYE8 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494784 PE=4 SV=1)

HSP 1 Score: 822 bits (2122), Expect = 8.88e-300
Identity = 424/435 (97.47%), Postives = 428/435 (98.39%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTSQRTFRLSILSCSSTSQSPEANLQSAESCV 60
           MAMATLPLFHHLPTLSNPKS TILRPRLPTSQRTF LSILSCSSTSQSPEANLQSAESCV
Sbjct: 1   MAMATLPLFHHLPTLSNPKSPTILRPRLPTSQRTFHLSILSCSSTSQSPEANLQSAESCV 60

Query: 61  NFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRVAL 120
           N GLQLFSKGRVKEALVQFEAALNMDPNPMEAQAA YNKACCHAYRGEGKKAADCLRVAL
Sbjct: 61  NLGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAAFYNKACCHAYRGEGKKAADCLRVAL 120

Query: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180
           REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV
Sbjct: 121 REYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFRGV 180

Query: 181 RKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240
           R+FFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD
Sbjct: 181 RRFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFLWD 240

Query: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300
           NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER
Sbjct: 241 NKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKAER 300

Query: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAKSK 360
           FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAP  AAA ALPSIGEDFEKRAQSITAKSK
Sbjct: 301 FRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPA-AAATALPSIGEDFEKRAQSITAKSK 360

Query: 361 LKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQKII 420
           LKAEIRFRAEVISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGR+RRSGRGMPDWQKII
Sbjct: 361 LKAEIRFRAEVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRIRRSGRGMPDWQKII 420

Query: 421 EELPPMEALLSKLEK 435
           EELPPMEALLSKLEK
Sbjct: 421 EELPPMEALLSKLEK 434

[Close]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL
Match: A0A6J1J7F4 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482050 PE=4 SV=1)

HSP 1 Score: 775 bits (2000), Expect = 4.16e-281
Identity = 398/437 (91.08%), Postives = 418/437 (95.65%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTS--QRTFRLSILSCSSTSQSPEANLQSAES 60
           + MATLP+FH L TLSNPKS TILR RLPTS  QR F +SIL CSSTSQSPE N++SAES
Sbjct: 3   LGMATLPVFHQLLTLSNPKSATILRQRLPTSNSQRAFHVSILCCSSTSQSPETNVESAES 62

Query: 61  CVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 120
            VN GLQLFSKGRVKEALVQFEAAL+M+PNPMEAQAALYNKACCHAYRGEGKKAADCLRV
Sbjct: 63  SVNLGLQLFSKGRVKEALVQFEAALDMNPNPMEAQAALYNKACCHAYRGEGKKAADCLRV 122

Query: 121 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 180
           ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR
Sbjct: 123 ALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAPFR 182

Query: 181 GVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVALFL 240
           GVR+FFYVALSAAAGISLLFN+PRLFRAIQGG+ APDVWET GNLAVNVGGI+VFVALFL
Sbjct: 183 GVRRFFYVALSAAAGISLLFNLPRLFRAIQGGNEAPDVWETVGNLAVNVGGIVVFVALFL 242

Query: 241 WDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQKA 300
           WDNKKEEEQLAQISRNETLSRLPLRLSTNR+VELVQLRDTVRPVILAGKKETVSSAIQKA
Sbjct: 243 WDNKKEEEQLAQISRNETLSRLPLRLSTNRVVELVQLRDTVRPVILAGKKETVSSAIQKA 302

Query: 301 ERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSITAK 360
           ERFRTELLRRGVLLVPVIW EGREP++EKKGFGAP  A +AALPSIGEDFEKRAQSITAK
Sbjct: 303 ERFRTELLRRGVLLVPVIWREGREPRMEKKGFGAPAPAGSAALPSIGEDFEKRAQSITAK 362

Query: 361 SKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 420
           SKLKAEIRFRA+VISPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK
Sbjct: 363 SKLKAEIRFRADVISPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDWQK 422

Query: 421 IIEELPPMEALLSKLEK 435
           IIEELPPM+ALLSKLE+
Sbjct: 423 IIEELPPMDALLSKLER 439

[Close]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL
Match: A0A6J1CPA1 (protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013307 PE=4 SV=1)

HSP 1 Score: 773 bits (1996), Expect = 1.63e-280
Identity = 398/439 (90.66%), Postives = 415/439 (94.53%), Query Frame = 0


Query: 1   MAMATLPLFHHLPTLSNPKSLTILRPRLPTS----QRTFRLSILSCSSTSQSPEANLQSA 60
           MA+ATLPL+HHL   SNPKS T LRPRLPTS     + F LSI  CSSTSQSPEAN+++A
Sbjct: 1   MAVATLPLYHHLLRFSNPKSRTTLRPRLPTSTFNFHKNFHLSIAFCSSTSQSPEANVETA 60

Query: 61  ESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKACCHAYRGEGKKAADCL 120
           ESCVN GLQLFSKGRVKEALVQF+AALN+DPNP+EAQAA YNKACCHAYRGEGKKAADCL
Sbjct: 61  ESCVNLGLQLFSKGRVKEALVQFDAALNLDPNPLEAQAAFYNKACCHAYRGEGKKAADCL 120

Query: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGYGFRRDLKLISEVQAP 180
           RVALREYNLKFGTILNDPDLASFRALPEFKELQEEAR+GGEDIGYGFRRDLKLISEVQAP
Sbjct: 121 RVALREYNLKFGTILNDPDLASFRALPEFKELQEEARLGGEDIGYGFRRDLKLISEVQAP 180

Query: 181 FRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAVNVGGIIVFVAL 240
           FRGVRKFFYVALSAAAGISLLF IPRLFRAIQGGD APDVWETAGNLAVN+GGIIV VAL
Sbjct: 181 FRGVRKFFYVALSAAAGISLLFTIPRLFRAIQGGDEAPDVWETAGNLAVNMGGIIVLVAL 240

Query: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ 300
           FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ
Sbjct: 241 FLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRPVILAGKKETVSSAIQ 300

Query: 301 KAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSIGEDFEKRAQSIT 360
           KAERFRTELLRRGVLLVPV+WGEGREPQIEK+GFGAPT A A  LPSIGEDFEKRAQSIT
Sbjct: 301 KAERFRTELLRRGVLLVPVVWGEGREPQIEKRGFGAPTNATAV-LPSIGEDFEKRAQSIT 360

Query: 361 AKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420
           AKSKLKAEIRFRAEV+SPAEWESWIR+QQ+SEGVTPGEDVYIILRLDGRVRRSGRGMPDW
Sbjct: 361 AKSKLKAEIRFRAEVVSPAEWESWIRDQQKSEGVTPGEDVYIILRLDGRVRRSGRGMPDW 420

Query: 421 QKIIEELPPMEALLSKLEK 435
            KIIEELPPMEALLSKLE+
Sbjct: 421 PKIIEELPPMEALLSKLER 438

[Close]

BLAST of CsGy4G000620 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 609.4 bits (1570), Expect = 2.3e-174
Identity = 317/454 (69.82%), Postives = 374/454 (82.38%), Query Frame = 0


Query: 1   MAMATLP-LFHHLP-TLSNPKS-LTILRPRLP-------TSQRTFRLSILSCSSTSQSPE 60
           MA+AT P L  H P  +SN  S +   RP LP        S+R +   +   +S+S SP 
Sbjct: 1   MAVATAPSLNRHFPRRISNLYSRVKQRRPWLPPGDATLFNSRRNWDSHLFVYASSSSSPS 60

Query: 61  ANLQS---------AESCVNFGLQLFSKGRVKEALVQFEAALNMDPNPMEAQAALYNKAC 120
           ++  S         AE CVN GL LF +GRVK+ALVQFE AL++ PNP+E+QAA YNKAC
Sbjct: 61  SSPPSPNSPTDDLTAELCVNTGLDLFKRGRVKDALVQFETALSLAPNPIESQAAYYNKAC 120

Query: 121 CHAYRGEGKKAADCLRVALREYNLKFGTILNDPDLASFRALPEFKELQEEARMGGEDIGY 180
           CHAYRGEGKKA DCLR+ALR+YNLKF TILNDPDLASFRALPEFKELQEEAR+GGEDIG 
Sbjct: 121 CHAYRGEGKKAVDCLRIALRDYNLKFATILNDPDLASFRALPEFKELQEEARLGGEDIGD 180

Query: 181 GFRRDLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAG 240
            FRRDLKLISEV+APFRGVRKFFY A +AAAGIS+ F +PRL +AI+GGDGAP++ ET G
Sbjct: 181 NFRRDLKLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTG 240

Query: 241 NLAVNVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRLSTNRIVELVQLRDTVRP 300
           N A+N+GGI+V V+LFLW+NKKEEEQ+ QI+R+ETLSRLPLRLSTNR+VELVQLRDTVRP
Sbjct: 241 NAAINIGGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRP 300

Query: 301 VILAGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAAL 360
           VILAGKKETV+ A+QKA+RFRTELLRRGVLLVPV+WGE + P+IEKKGFGA ++ AA +L
Sbjct: 301 VILAGKKETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGA-SSKAATSL 360

Query: 361 PSIGEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILR 420
           PSIGEDF+ RAQS+ A+SKLK EIRF+AE +SP EWE WIR+QQ SEGV PG+DVYIILR
Sbjct: 361 PSIGEDFDTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILR 420

Query: 421 LDGRVRRSGRGMPDWQKIIEELPPMEALLSKLEK 436
           LDGRVRRSGRGMPDW +I +ELPPM+ +LSKLE+
Sbjct: 421 LDGRVRRSGRGMPDWAEISKELPPMDDVLSKLER 453

[Close]

BLAST of CsGy4G000620 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-32
Identity = 84/269 (31.23%), Postives = 137/269 (50.93%), Query Frame = 0


Query: 166 DLKLISEVQAPFRGVRKFFYVALSAAAGISLLFNIPRLFRAIQGGDGAPDVWETAGNLAV 225
           D ++ SEV +PFR VR FFY+A  A+  +  L    RL  A+     + +V E    L V
Sbjct: 94  DARIRSEVLSPFRSVRMFFYLAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGV 153

Query: 226 NVGGIIVFVALFLWDNKKEEEQLAQISRNETLSRLPLRL-STNRIVELVQLRDTVRPVIL 285
           ++G   +F  L+  +NK +  Q+A++SR E L +L +R+   N+++ +  LR   R VI 
Sbjct: 154 DIGAASLFAFLYFNENKTKNAQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVIC 213

Query: 286 AGKKETVSSAIQKAERFRTELLRRGVLLVPVIWGEGREPQIEKKGFGAPTTAAAAALPSI 345
           AG  E +  A ++++ +   L+ RGV++V     +G  P +E   F     A        
Sbjct: 214 AGPAEFIEEAFKRSKEYTQGLVERGVVVVAYA-TDGNSPVLE---FDETDIA-------- 273

Query: 346 GEDFEKRAQSITAKSKLKAEIRFRAEVISPAEWESWIRNQQESEGVTPGEDVYIILRLDG 405
            E+  +R + +           +R   +   EWE W+  Q++   V+    VY+ LRLDG
Sbjct: 274 DEEMSQRRKKL-----------WRVTPVFVPEWEKWLNEQKKLANVSSDSPVYLSLRLDG 333

Query: 406 RVRRSGRGMPDWQKIIEELPPMEALLSKL 434
           RVR SG G P WQ  + +LPP++ + + L
Sbjct: 334 RVRASGVGYPPWQAFVAQLPPVKGMWTGL 339

The following BLAST results are available for this feature:

BLAST of CsGy4G000620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	3.2e-173	69.82	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CsGy4G000620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152258.2	9.62e-309	100.00	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN52798.1 hyp...	[more]
XP_008454363.1	1.83e-299	97.47	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Cucumis me...	[more]
XP_038905239.1	2.44e-288	94.48	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida]	[more]
XP_022983449.1	8.60e-281	91.08	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita maxima]	[more]
XP_022143429.1	3.37e-280	90.66	protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 [Momordica charantia]	[more]

BLAST of CsGy4G000620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT96	4.66e-309	100.00	TPR_REGION domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G001650 ...	[more]
A0A5A7TR76	8.88e-300	97.47	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BYE8	8.88e-300	97.47	protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Cucumis melo OX=365...	[more]
A0A6J1J7F4	4.16e-281	91.08	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1CPA1	1.63e-280	90.66	protein LOW PSII ACCUMULATION 1, chloroplastic isoform X1 OS=Momordica charantia...	[more]

BLAST of CsGy4G000620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02910.1	2.3e-174	69.82	tetratricopeptide repeat (TPR)-containing protein	[more]
AT4G28740.1	1.5e-32	31.23	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 42..142 e-value: 3.3E-9 score: 38.6
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 49..122
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 164..241 e-value: 1.9E-24 score: 85.6
None	No IPR available	PANTHER	PTHR35498:SF4	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 31..434
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 31..434
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 56..89 score: 9.5289

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G000620.2	CsGy4G000620.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010270	photosystem II oxygen evolving complex assembly
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding