CsGy4G000260 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy4G000260
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr4: 180300 .. 180506 (-)
RNA-Seq ExpressionCsGy4G000260
SyntenyCsGy4G000260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGGTTAACCAAGCTGGTTTAGAGATGATATATATATTTGCCCCAAGAAAATTGAAGTTGAAAAATGGAGGGCATAGGGCCATGCATGAGTGA

mRNA sequence

ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGGTTAACCAAGCTGGTTTAGAGATGATATATATATTTGCCCCAAGAAAATTGAAGTTGAAAAATGGAGGGCATAGGGCCATGCATGAGTGA

Coding sequence (CDS)

ATGAGCAAGAAGGCGGTGCTTGTTGTGTTAGCAATGGTGTTCTTGCTAGCTACTCGTAGCCAATTCTGTCAGAGCCACAGACCATCACCATTGATGAGGAAAGTCAATTCGGATGAGGTTAACCAAGCTGGTTTAGAGATGATATATATATTTGCCCCAAGAAAATTGAAGTTGAAAAATGGAGGGCATAGGGCCATGCATGAGTGA

Protein sequence

MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEVNQAGLEMIYIFAPRKLKLKNGGHRAMHE*
Homology
[Close]
BLAST of CsGy4G000260 vs. NCBI nr
Match: KGN52756.1 (hypothetical protein Csa_014977 [Cucumis sativus])

HSP 1 Score: 55.5 bits (132), Expect = 7.11e-08
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMR-----KVNSDEVNQAGLEMIYIFAPRK 60
          MSKK  LVVLAMVF+L   +    S R + ++      +VNSDEVN+AGLEMI  FAPRK
Sbjct: 1  MSKKT-LVVLAMVFVLLVAN----SVRATDIITIDEATEVNSDEVNKAGLEMI--FAPRK 60

Query: 61 LKLKNGGHR 64
          LKL+NGG R
Sbjct: 61 LKLRNGGSR 62

[Close]
BLAST of CsGy4G000260 vs. NCBI nr
Match: TYK29460.1 (hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 5.16e-07
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSH--RPSPLMRKVNSDEVNQAGLEMIYIFAPRKLKL 60
          MSKKA LVVLAM F+L   +    +       ++ +VNSDEVN+AGLE I  FAPRKLKL
Sbjct: 1  MSKKA-LVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKI--FAPRKLKL 60

Query: 61 KNGGHR 64
          KNGG R
Sbjct: 61 KNGGPR 63

[Close]
BLAST of CsGy4G000260 vs. NCBI nr
Match: KAA0044331.1 (hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 48.9 bits (115), Expect = 2.15e-05
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 31 LMRKVNSDEVNQAGLEMIYIFAPRKLKLKNGGHR 64
          ++ +VNSDEVN+AGLE I  FAPRKLKLKNGG R
Sbjct: 22 VIEEVNSDEVNRAGLEKI--FAPRKLKLKNGGPR 53

[Close]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match: A0A0A0KWD8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000780 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.73e-17
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 0 

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEV 40
          MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDE+
Sbjct: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMRKVNSDEI 40

[Close]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match: A0A0A0KY29 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.44e-08
Identity = 40/69 (57.97%), Postives = 48/69 (69.57%), Query Frame = 0 

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSHRPSPLMR-----KVNSDEVNQAGLEMIYIFAPRK 60
          MSKK  LVVLAMVF+L   +    S R + ++      +VNSDEVN+AGLEMI  FAPRK
Sbjct: 1  MSKKT-LVVLAMVFVLLVAN----SVRATDIITIDEATEVNSDEVNKAGLEMI--FAPRK 60

Query: 61 LKLKNGGHR 64
          LKL+NGG R
Sbjct: 61 LKLRNGGSR 62

[Close]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match: A0A5D3E1P7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00540 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.50e-07
Identity = 38/66 (57.58%), Postives = 45/66 (68.18%), Query Frame = 0 

Query: 1  MSKKAVLVVLAMVFLLATRSQFCQSH--RPSPLMRKVNSDEVNQAGLEMIYIFAPRKLKL 60
          MSKKA LVVLAM F+L   +    +       ++ +VNSDEVN+AGLE I  FAPRKLKL
Sbjct: 1  MSKKA-LVVLAMAFVLLVANSVRATDIITIDEVIEEVNSDEVNRAGLEKI--FAPRKLKL 60

Query: 61 KNGGHR 64
          KNGG R
Sbjct: 61 KNGGPR 63

[Close]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match: A0A5A7TRX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00540 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.04e-05
Identity = 25/34 (73.53%), Postives = 29/34 (85.29%), Query Frame = 0 

Query: 31 LMRKVNSDEVNQAGLEMIYIFAPRKLKLKNGGHR 64
          ++ +VNSDEVN+AGLE I  FAPRKLKLKNGG R
Sbjct: 22 VIEEVNSDEVNRAGLEKI--FAPRKLKLKNGGPR 53

The following BLAST results are available for this feature:
BLAST of CsGy4G000260 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy4G000260 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52756.17.11e-0857.97hypothetical protein Csa_014977 [Cucumis sativus][more]
TYK29460.15.16e-0757.58hypothetical protein E5676_scaffold655G00540 [Cucumis melo var. makuwa][more]
KAA0044331.12.15e-0573.53hypothetical protein E6C27_scaffold46G00540 [Cucumis melo var. makuwa][more]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWD84.73e-1797.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000780 PE=4 SV=1[more]
A0A0A0KY293.44e-0857.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000770 PE=4 SV=1[more]
A0A5D3E1P72.50e-0757.58Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TRX61.04e-0573.53Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of CsGy4G000260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy4G000260.2CsGy4G000260.2mRNA