CsGy4G000070 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy4G000070
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Photosystem II CP47 reaction center protein
Location	Gy14Chr4: 57729 .. 58024 (+)
RNA-Seq Expression	CsGy4G000070
Synteny	CsGy4G000070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTGACGCCATGAGTAGAGTACGTTAATTATAAGATCCATTTTGTTTTCTGGATTGTGCTTCTTAGCAGCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTCTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGTTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAAGTTCAAGTACCGCAACAATTTTCTTATATTGA

mRNA sequence

ATGCTTGACGCCATGAGTAGAGTACCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTCTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGTTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAAGTTCAAGTACCGCAACAATTTTCTTATATTGA

Coding sequence (CDS)

ATGCTTGACGCCATGAGTAGAGTACCTATCTGGCATTGGGTGTATTGGGATCTAGAAATATTTTCTGATGAACGTACAGGAAAACCTTCTTTGGATTTGCCGAAGATTTTTGGAATTCATTTATTTCTCTCAGGGTTGGGTTGTTTTGGTTTTGGTGCATTTCATGTAACCGGATTGTACGGTCCGGGAATATGGGTATCCGATCCTTATGGATTAAGTTCAAGTACCGCAACAATTTTCTTATATTGA

Protein sequence

MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDPYGLSSSTATIFLY*

Homology

[Close]

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot
Match: Q2QD63 (Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB PE=3 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 6.6e-35
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+     +
Sbjct: 172 YGLTGRVQAV 181

[Close]

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot
Match: A6MMN3 (Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 GN=psbB PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-34
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+    +I
Sbjct: 172 YGLTGKVQSI 181

[Close]

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot
Match: A4QL45 (Photosystem II CP47 reaction center protein OS=Draba nemorosa OX=171822 GN=psbB PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-34
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+    T+
Sbjct: 172 YGLTGKVQTV 181

[Close]

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot
Match: Q06FP2 (Photosystem II CP47 reaction center protein OS=Pelargonium hortorum OX=4031 GN=psbB PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 5.6e-34
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+    ++
Sbjct: 172 YGLTGRVQSV 181

[Close]

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot
Match: A8SEC9 (Photosystem II CP47 reaction center protein OS=Ceratophyllum demersum OX=4428 GN=psbB PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 7.3e-34
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+    ++
Sbjct: 172 YGLTGKVQSV 181

[Close]

BLAST of CsGy4G000070 vs. NCBI nr
Match: ABK55741.1 (chloroplast photosystem II CP47 protein, partial [Cucumis sativus])

HSP 1 Score: 146 bits (368), Expect = 4.18e-43
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP
Sbjct: 58  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 117

Query: 70  YGLSSSTATI 79
           YGL+     +
Sbjct: 118 YGLTGRVQAV 127

[Close]

BLAST of CsGy4G000070 vs. NCBI nr
Match: OTF84529.1 (putative photosystem antenna protein-like protein [Helianthus annuus])

HSP 1 Score: 148 bits (373), Expect = 1.75e-42
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLY 60
           +LD M R  IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFL+GL CFGFGAFHVTGLY
Sbjct: 51  VLDPMWRQAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGLACFGFGAFHVTGLY 110

Query: 61  GPGIWVSDPYGLSSSTATI 79
           GPGIWVSDPYGL+    ++
Sbjct: 111 GPGIWVSDPYGLTGKVQSV 129

[Close]

BLAST of CsGy4G000070 vs. NCBI nr
Match: WP_201336743.1 (hypothetical protein, partial [Salinicoccus roseus] >MBK5628436.1 hypothetical protein [Salinicoccus roseus])

HSP 1 Score: 142 bits (359), Expect = 5.16e-42
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 38  IWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDP 97

Query: 70  YGLSSSTATI 79
           YGL+    ++
Sbjct: 98  YGLTGKVQSV 107

[Close]

BLAST of CsGy4G000070 vs. NCBI nr
Match: VAI53276.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 145 bits (365), Expect = 1.13e-41
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLY 60
           +LD M R  IWHWVYWDLEIFS+ERTGKPSLD PKIFGIHLFL+G+ CFGFGAFHVTGLY
Sbjct: 27  VLDPMWRQAIWHWVYWDLEIFSNERTGKPSLDFPKIFGIHLFLAGVACFGFGAFHVTGLY 86

Query: 61  GPGIWVSDPYGLSSSTATI 79
           GPGIWVSDPYGL+     +
Sbjct: 87  GPGIWVSDPYGLTGKVQAV 105

[Close]

BLAST of CsGy4G000070 vs. NCBI nr
Match: KAF9621399.1 (hypothetical protein IFM89_020921 [Coptis chinensis])

HSP 1 Score: 144 bits (364), Expect = 1.27e-41
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 65  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDP 124

Query: 70  YGLSSSTATI 79
           YGL+    ++
Sbjct: 125 YGLTGKVQSV 134

[Close]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL
Match: A1BQP0 (Chloroplast photosystem II CP47 protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 146 bits (368), Expect = 2.03e-43
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP
Sbjct: 58  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 117

Query: 70  YGLSSSTATI 79
           YGL+     +
Sbjct: 118 YGLTGRVQAV 127

[Close]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL
Match: A0A1Y3BU64 (Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0314g0573511 PE=4 SV=1)

HSP 1 Score: 148 bits (373), Expect = 8.48e-43
Identity = 64/79 (81.01%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1   MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLY 60
           +LD M R  IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFL+GL CFGFGAFHVTGLY
Sbjct: 51  VLDPMWRQAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGLACFGFGAFHVTGLY 110

Query: 61  GPGIWVSDPYGLSSSTATI 79
           GPGIWVSDPYGL+    ++
Sbjct: 111 GPGIWVSDPYGLTGKVQSV 129

[Close]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL
Match: A0A446VZF2 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_6Bv1G010680 PE=4 SV=1)

HSP 1 Score: 145 bits (365), Expect = 5.46e-42
Identity = 62/79 (78.48%), Postives = 68/79 (86.08%), Query Frame = 0


Query: 1   MLDAMSRVPIWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLY 60
           +LD M R  IWHWVYWDLEIFS+ERTGKPSLD PKIFGIHLFL+G+ CFGFGAFHVTGLY
Sbjct: 27  VLDPMWRQAIWHWVYWDLEIFSNERTGKPSLDFPKIFGIHLFLAGVACFGFGAFHVTGLY 86

Query: 61  GPGIWVSDPYGLSSSTATI 79
           GPGIWVSDPYGL+     +
Sbjct: 87  GPGIWVSDPYGLTGKVQAV 105

[Close]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL
Match: T1NKI2 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 7.98e-42
Identity = 60/64 (93.75%), Postives = 63/64 (98.44%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFL+G+ CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 37  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLAGVACFGFGAFHVTGLYGPGIWVSDP 96

Query: 70  YGLS 73
           YGL+
Sbjct: 97  YGLT 100

[Close]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL
Match: A0A1B0YPL1 (Photosystem II CP47 chlorophyll apoprotein OS=Tricyrtis macropoda OX=1126415 GN=psbB PE=4 SV=1)

HSP 1 Score: 144 bits (364), Expect = 1.18e-41
Identity = 62/70 (88.57%), Postives = 65/70 (92.86%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGL CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 79
           YGL+    ++
Sbjct: 172 YGLTGKVQSV 181

[Close]

BLAST of CsGy4G000070 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-34
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 10  IWHWVYWDLEIFSDERTGKPSLDLPKIFGIHLFLSGLGCFGFGAFHVTGLYGPGIWVSDP 69
           IWHWVYWDLEIF DERTGKPSLDLPKIFGIHLFLSG+ CFGFGAFHVTGLYGPGIWVSDP
Sbjct: 112 IWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDP 171

Query: 70  YGLSSSTATI 80
           YGL+     +
Sbjct: 172 YGLTGKVQPV 181

The following BLAST results are available for this feature:

BLAST of CsGy4G000070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD63	6.6e-35	90.00	Photosystem II CP47 reaction center protein OS=Cucumis sativus OX=3659 GN=psbB P...	[more]
A6MMN3	5.6e-34	88.57	Photosystem II CP47 reaction center protein OS=Dioscorea elephantipes OX=145284 ...	[more]
A4QL45	5.6e-34	87.14	Photosystem II CP47 reaction center protein OS=Draba nemorosa OX=171822 GN=psbB ...	[more]
Q06FP2	5.6e-34	87.14	Photosystem II CP47 reaction center protein OS=Pelargonium hortorum OX=4031 GN=p...	[more]
A8SEC9	7.3e-34	87.14	Photosystem II CP47 reaction center protein OS=Ceratophyllum demersum OX=4428 GN...	[more]

BLAST of CsGy4G000070 vs. NCBI nr


Match Name	E-value	Identity	Description
ABK55741.1	4.18e-43	90.00	chloroplast photosystem II CP47 protein, partial [Cucumis sativus]	[more]
OTF84529.1	1.75e-42	81.01	putative photosystem antenna protein-like protein [Helianthus annuus]	[more]
WP_201336743.1	5.16e-42	87.14	hypothetical protein, partial [Salinicoccus roseus] >MBK5628436.1 hypothetical p...	[more]
VAI53276.1	1.13e-41	78.48	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KAF9621399.1	1.27e-41	88.57	hypothetical protein IFM89_020921 [Coptis chinensis]	[more]

BLAST of CsGy4G000070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A1BQP0	2.03e-43	90.00	Chloroplast photosystem II CP47 protein (Fragment) OS=Cucumis sativus OX=3659 PE...	[more]
A0A1Y3BU64	8.48e-43	81.01	Putative photosystem antenna protein-like protein OS=Helianthus annuus OX=4232 G...	[more]
A0A446VZF2	5.46e-42	78.48	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_6Bv1G...	[more]
T1NKI2	7.98e-42	93.75	Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1	[more]
A0A1B0YPL1	1.18e-41	88.57	Photosystem II CP47 chlorophyll apoprotein OS=Tricyrtis macropoda OX=1126415 GN=...	[more]

BLAST of CsGy4G000070 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	2.0e-34	85.71	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 10..71 e-value: 5.2E-30 score: 104.6
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 8..74
None	No IPR available	PANTHER	PTHR33180:SF20	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 8..74
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 10..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G000070.1	CsGy4G000070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009521	photosystem
cellular_component	GO:0031676	plasma membrane-derived thylakoid membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding