CsGy3G044560 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G044560
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cytochrome c oxidase
Location	Gy14Chr3: 41243994 .. 41245861 (+)
RNA-Seq Expression	CsGy3G044560
Synteny	CsGy3G044560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTCTCTTTCCTTAAATAAGTAGAAATGTCTTAGGTTGGATGCGTTAAGAAAGTAAATTTGCTATTTTTATAAAAAAAAATAGCTTAATTCAACGATACTTTACATGATTTTTGTTTCTTTTTTTATGATGGAGGTGAGAGGTTGGGAATGTTCCAAAAACTGATGGAAATTTAACCCAAAACTACTGATCAACCAAAGGTGGTTATCAACATACTGATGAGGGAGAGAATAATATTATGTTTGTTCATATATCTAAATGGTGTTATAAATTTATAATATTGTATTTTAAATCGTTAAACACATTTAATCCTAAAGAATAACCAAGAATTTAGTACTTTTACTTCAAAAGAAGTTAGAATATTGTTTTTATCAGCTCCAATGGGTAGGTCGCAGTTAATTATTCGTCTGCCAAGTGAGTATCAGTAAACTAACTAATCATGAGAAATAAATACTACACAACGATTATAGTCTATAATATGTACACTAGTGTATTTTCTCATTCTTCTTTTATATACACTCCAATTCATTCTTAACCAAACTCTCATCCATTTAACAGGACAGACTATCCACTTACAAAAAAGTTATATTTTGCGACCTTACCTAGAGTGAAAAGATCACCCACACACGTGAATATACTAAAGATAGCAATTCTCATACTTATTAGGGACCAAATTTATAATCTTTAACCGAGACTTTGAATCGTATGAGCGAACACAAAAGCTTAAAGGATGGTTAGTGTAAGTATATTATTCAGTGTAGAGATAGTATTTTTTTTTTAATCAATATATCTTATGAAGTTAGGGAGGTCGTGGGGGATTTGAAGTTTCGAATCAATGAAGAGTATCCCTTCACATTATAACATTGCATGTATAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAGGTAAAATATACCTAATTATACACAGATATATATATGTTTTTTCAACCATTCGTTTCATATGCACAAGTCTTTGTCAGCCTCATTTAACATATGGGGTTCTATAGTTCCATAAAAATTGTATGGAACAAAGTGTACAAAGGGGTGGGAATTAAATCTCAATCTTGAGAGGATTGAAGGGCAATCTTACCACTATCTAACAGAGCATAAAGTTGGAACATCTTCGGTGTTTTTGAAGGGTTTGTAGTGACAAAACATTTGTTTCGTTATAAATTCCCAACCATCCTATCAACAAATGATGATAAATATAGAGAGAACCATTTTGATTAGAAAAGTGTGTGAATTAATTATATTTCTCTGTTCTTTATTTTTATTACTTTTGTCATATCATTTTGGCTCGTATTATTAGGTGCGTGCAGAAGAAGGGGGAACACGCACCTGAATGCAAGAAGTTCGCCAAGTATTATCGATCTCTATGTCCTGGTGAATGGGTGAGGCCGGAGATTTTCAGTACCACGGCATTTCACCTAATATCGTCTTTCATTATTCTGAAGGGTATAGCACACACACACACATGTATATATTAAAGTCTAGCTAGTGAATAAGGCCATATTTTTGGTTGGTGTGCAGGTTGAGAAATGGAATGAGCAAAGGGAGCTTGGGGTCTTTCCTGGTCCAATGTAA

mRNA sequence

ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAGGTGCGTGCAGAAGAAGGGGGAACACGCACCTGAATGCAAGAAGTTCGCCAAGTATTATCGATCTCTATGTCCTGGTGAATGGGTTGAGAAATGGAATGAGCAAAGGGAGCTTGGGGTCTTTCCTGGTCCAATGTAA

Coding sequence (CDS)

ATGTCAGCGTCTCAGATAGATCCTCACGACAAGATGAGATCTAGAGACATGAGCAAGGTGGCACGTGGCGAACAAGCACCAAGGCCAGCTCATGAATACGGCACCGTTTCAAAGCCTCCACCGCCTTCTTCCTCCTCCGTTCCTTCCGCTCAGACCAACCTCGACGGCAACGACGATGATCGCCGCCGCGGTAGTGAAGACAGAGATAATAAGGTGGTAATGGATGAGGGAGTAGGGACAGCGCCAAGCGATATTCGTTTTCCTTTCACTAATCAAACTCGCCATTGCTATGCACGATATTTGGAATATCATAGGTGCGTGCAGAAGAAGGGGGAACACGCACCTGAATGCAAGAAGTTCGCCAAGTATTATCGATCTCTATGTCCTGGTGAATGGGTTGAGAAATGGAATGAGCAAAGGGAGCTTGGGGTCTTTCCTGGTCCAATGTAA

Protein sequence

MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQRELGVFPGPM*

Homology

[Close]

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot
Match: Q9SUD3 (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 4.4e-29
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 80  TAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQ 139
           TAP+D RFP TNQTRHC+ RY+E+HRC   KGE A EC++FAKYYR+LCPGEWV+KWNEQ
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWNEQ 68

Query: 140 RELGVFPGPM 150
           RE G FPGP+
Sbjct: 69  RETGTFPGPL 78

[Close]

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot
Match: Q945L0 (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.2e-28
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 80  TAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQ 139
           TAP+D RFP TNQTRHC+ RY+E+HRC   KGE + +C++FAKYYR+LCPGEWV+KWNEQ
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQ 68

Query: 140 RELGVFPGPM 150
           RE G FPGP+
Sbjct: 69  RESGTFPGPL 78

[Close]

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot
Match: Q9S7L9 (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 4.9e-28
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 22  RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTA 81
           + E AP         S+ P  +  +        + N+D+    SE+   +   +  + TA
Sbjct: 68  KSESAPESTE---VASEAPAAAEDNAEETPAAAEENNDE--NASEEVAEETPDEIKLETA 127

Query: 82  PSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQRE 141
           P+D RFP TNQTRHC+ RY+EYHRCV  KG+ APEC KFAK+YRSLCP EWV++WNEQRE
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRE 187

Query: 142 LGVFPGPM 150
            G FPGP+
Sbjct: 188 NGTFPGPL 190

[Close]

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot
Match: Q9LPJ2 (Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN=At1g32710 PE=3 SV=2)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-26
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A          
Sbjct: 1   MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA---------- 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
            +RG   R+    ++E         RFP TN+TRHC+ R+++YH+C++K G  A +C   
Sbjct: 61  -KRGDSGRETDAAVEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNL 113

Query: 121 AKYYRSLCPGEWVEK 136
             Y RS+CP E V K
Sbjct: 121 RDYVRSICPEELVSK 113

[Close]

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot
Match: O94581 (Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cox12 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 43/85 (50.59%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 65  SEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYY 124
           SE  D +       GT   D RFP TNQT+HC+  Y++Y RC++ KGE    CK+F   Y
Sbjct: 2   SEQEDQEAPKQFTFGTVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAY 61

Query: 125 RSLCPGEWVEKWNEQRELGVFPGPM 150
           +SLCP EWVE+W+EQRE G FP P+
Sbjct: 62  QSLCPMEWVERWDEQRENGTFPAPI 86

[Close]

BLAST of CsGy3G044560 vs. NCBI nr
Match: XP_031737981.1 (cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus])

HSP 1 Score: 315 bits (807), Expect = 1.40e-108
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
           RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF
Sbjct: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120

Query: 121 AKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           AKYYRSLCPGEWVEKWNEQRELGVFPGPM
Sbjct: 121 AKYYRSLCPGEWVEKWNEQRELGVFPGPM 149

[Close]

BLAST of CsGy3G044560 vs. NCBI nr
Match: XP_038886888.1 (putative cytochrome c oxidase subunit 6b-like [Benincasa hispida])

HSP 1 Score: 285 bits (730), Expect = 7.03e-97
Identity = 133/149 (89.26%), Postives = 142/149 (95.30%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSA+Q+DPHDKMRSRD+SKV RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSAAQVDPHDKMRSRDISKVTRGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
           RRRG ED DNK   DEG+ TAP+D+RFPFTNQTRHCYARYLEYHRCVQK+GEHAPECKKF
Sbjct: 61  RRRGGEDTDNK---DEGLETAPNDLRFPFTNQTRHCYARYLEYHRCVQKEGEHAPECKKF 120

Query: 121 AKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           AKYYRSLCPGEW+EKWNEQRELGVFPGP+
Sbjct: 121 AKYYRSLCPGEWIEKWNEQRELGVFPGPI 146

[Close]

BLAST of CsGy3G044560 vs. NCBI nr
Match: XP_008465918.1 (PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038526.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa] >TYK31123.1 putative cytochrome c oxidase subunit 6b-like [Cucumis melo var. makuwa])

HSP 1 Score: 280 bits (716), Expect = 9.93e-95
Identity = 136/151 (90.07%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN    DD 
Sbjct: 1   MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN----DDH 60

Query: 61  RRRGSEDRD--NKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120
           RR GSED+D  NKVVMDEGV TAPSD+RFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK
Sbjct: 61  RRSGSEDKDKDNKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120

Query: 121 KFAKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           KFA YYRSLCPGEWVEKWNEQRELGVFPGP+
Sbjct: 121 KFANYYRSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of CsGy3G044560 vs. NCBI nr
Match: XP_031737980.1 (putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus])

HSP 1 Score: 278 bits (710), Expect = 1.41e-93
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
           RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF
Sbjct: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120

Query: 121 AKYYRSLCPGEWV 133
           AKYYRSLCPGEWV
Sbjct: 121 AKYYRSLCPGEWV 133

[Close]

BLAST of CsGy3G044560 vs. NCBI nr
Match: XP_022932983.1 (cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata])

HSP 1 Score: 239 bits (609), Expect = 1.67e-78
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV 72
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN D RR G +D+D+KV
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD-RRHGGKDKDSKV 65

Query: 73  VMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEW 132
           V++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGEHAPEC KFAKYYRSLCP EW
Sbjct: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEW 125

Query: 133 VEKWNEQRELGVFPGPM 149
           +EKWNEQRELG+FPGP+
Sbjct: 126 IEKWNEQRELGIFPGPI 141

[Close]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL
Match: A0A0A0LEH8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1)

HSP 1 Score: 315 bits (807), Expect = 6.79e-109
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD
Sbjct: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
           RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF
Sbjct: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120

Query: 121 AKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           AKYYRSLCPGEWVEKWNEQRELGVFPGPM
Sbjct: 121 AKYYRSLCPGEWVEKWNEQRELGVFPGPM 149

[Close]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL
Match: A0A5D3E4S8 (Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G004020 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 4.81e-95
Identity = 136/151 (90.07%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN    DD 
Sbjct: 1   MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN----DDH 60

Query: 61  RRRGSEDRD--NKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120
           RR GSED+D  NKVVMDEGV TAPSD+RFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK
Sbjct: 61  RRSGSEDKDKDNKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120

Query: 121 KFAKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           KFA YYRSLCPGEWVEKWNEQRELGVFPGP+
Sbjct: 121 KFANYYRSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL
Match: A0A1S3CQ05 (putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC103503497 PE=4 SV=1)

HSP 1 Score: 280 bits (716), Expect = 4.81e-95
Identity = 136/151 (90.07%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MSASQIDPHDKMRSRD+SKVARGEQAPRPAHEYGTVSKPPPPSS+SVPSAQTN    DD 
Sbjct: 1   MSASQIDPHDKMRSRDVSKVARGEQAPRPAHEYGTVSKPPPPSSTSVPSAQTN----DDH 60

Query: 61  RRRGSEDRD--NKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120
           RR GSED+D  NKVVMDEGV TAPSD+RFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK
Sbjct: 61  RRSGSEDKDKDNKVVMDEGVETAPSDLRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECK 120

Query: 121 KFAKYYRSLCPGEWVEKWNEQRELGVFPGPM 149
           KFA YYRSLCPGEWVEKWNEQRELGVFPGP+
Sbjct: 121 KFANYYRSLCPGEWVEKWNEQRELGVFPGPI 147

[Close]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL
Match: A0A6J1F3D0 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC111439604 PE=4 SV=1)

HSP 1 Score: 239 bits (609), Expect = 8.08e-79
Identity = 111/137 (81.02%), Postives = 123/137 (89.78%), Query Frame = 0


Query: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKV 72
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS  SAQTNLDGN D RR G +D+D+KV
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSASSAQTNLDGNSD-RRHGGKDKDSKV 65

Query: 73  VMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEW 132
           V++EGV TAP+D+RFPFTNQTRHCY RYLEYH  +QKKGEHAPEC KFAKYYRSLCP EW
Sbjct: 66  VVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSSLQKKGEHAPECDKFAKYYRSLCPVEW 125

Query: 133 VEKWNEQRELGVFPGPM 149
           +EKWNEQRELG+FPGP+
Sbjct: 126 IEKWNEQRELGIFPGPI 141

[Close]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL
Match: A0A6J1IE20 (cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC111471817 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 3.63e-73
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0


Query: 13  RSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSS-VPSAQTNLDGNDDDRRRGSEDRDNK 72
           R RD+SKVARGEQAPRP HEYGTVSKPPPPSSSS   SAQTNLDGN +  R G +D   K
Sbjct: 6   RPRDISKVARGEQAPRPVHEYGTVSKPPPPSSSSSASSAQTNLDGNGN-HRHGGKDEYGK 65

Query: 73  VVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGE 132
           VV++EGV TAP+D+RFPFTNQTRHCY RYLEYH C+QKKGEH PEC KFAKYYRSLCP +
Sbjct: 66  VVVEEGVETAPNDMRFPFTNQTRHCYTRYLEYHSCLQKKGEHVPECDKFAKYYRSLCPAQ 125

Query: 133 WVEKWNEQRELGVFPGPM 149
           W+EKWNEQRELG+FPG +
Sbjct: 126 WIEKWNEQRELGIFPGSI 142

[Close]

BLAST of CsGy3G044560 vs. TAIR 10
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 129.0 bits (323), Expect = 3.1e-30
Identity = 51/70 (72.86%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 80  TAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQ 139
           TAP+D RFP TNQTRHC+ RY+E+HRC   KGE A EC++FAKYYR+LCPGEWV+KWNEQ
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWVDKWNEQ 68

Query: 140 RELGVFPGPM 150
           RE G FPGP+
Sbjct: 69  RETGTFPGPL 78

[Close]

BLAST of CsGy3G044560 vs. TAIR 10
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.6e-29
Identity = 49/70 (70.00%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 80  TAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQ 139
           TAP+D RFP TNQTRHC+ RY+E+HRC   KGE + +C++FAKYYR+LCPGEWV+KWNEQ
Sbjct: 9   TAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWVDKWNEQ 68

Query: 140 RELGVFPGPM 150
           RE G FPGP+
Sbjct: 69  RESGTFPGPL 78

[Close]

BLAST of CsGy3G044560 vs. TAIR 10
Match: AT1G22450.1 (cytochrome C oxidase 6B )

HSP 1 Score: 125.6 bits (314), Expect = 3.5e-29
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 22  RGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDDRRRGSEDRDNKVVMDEGVGTA 81
           + E AP         S+ P  +  +        + N+D+    SE+   +   +  + TA
Sbjct: 68  KSESAPESTE---VASEAPAAAEDNAEETPAAAEENNDE--NASEEVAEETPDEIKLETA 127

Query: 82  PSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKFAKYYRSLCPGEWVEKWNEQRE 141
           P+D RFP TNQTRHC+ RY+EYHRCV  KG+ APEC KFAK+YRSLCP EWV++WNEQRE
Sbjct: 128 PADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWVDRWNEQRE 187

Query: 142 LGVFPGPM 150
            G FPGP+
Sbjct: 188 NGTFPGPL 190

[Close]

BLAST of CsGy3G044560 vs. TAIR 10
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.5e-27
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0


Query: 1   MSASQIDPHDKMRSRDMSKVARGEQAPRPAHEYGTVSKPPPPSSSSVPSAQTNLDGNDDD 60
           MS++Q+DPHDKMRSRD+SKVARG+QAPRPAH  GTVS  PPP + +   A          
Sbjct: 1   MSSAQMDPHDKMRSRDISKVARGQQAPRPAHTPGTVS--PPPENEATFRA---------- 60

Query: 61  RRRGSEDRDNKVVMDEGVGTAPSDIRFPFTNQTRHCYARYLEYHRCVQKKGEHAPECKKF 120
            +RG   R+    ++E         RFP TN+TRHC+ R+++YH+C++K G  A +C   
Sbjct: 61  -KRGDSGRETDAAVEE---------RFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNL 113

Query: 121 AKYYRSLCPGEWVEK 136
             Y RS+CP E V K
Sbjct: 121 RDYVRSICPEELVSK 113

The following BLAST results are available for this feature:

BLAST of CsGy3G044560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SUD3	4.4e-29	72.86	Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana OX=3702 GN=COX6B-3 PE=...	[more]
Q945L0	2.2e-28	70.00	Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana OX=3702 GN=COX6B-2 PE=...	[more]
Q9S7L9	4.9e-28	47.66	Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana OX=3702 GN=COX6B-1 PE=...	[more]
Q9LPJ2	2.0e-26	46.67	Putative cytochrome c oxidase subunit 6b-like OS=Arabidopsis thaliana OX=3702 GN...	[more]
O94581	2.9e-20	50.59	Cytochrome c oxidase subunit 12, mitochondrial OS=Schizosaccharomyces pombe (str...	[more]

BLAST of CsGy3G044560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737981.1	1.40e-108	100.00	cytochrome c oxidase subunit 6B isoform X2 [Cucumis sativus]	[more]
XP_038886888.1	7.03e-97	89.26	putative cytochrome c oxidase subunit 6b-like [Benincasa hispida]	[more]
XP_008465918.1	9.93e-95	90.07	PREDICTED: putative cytochrome c oxidase subunit 6b-like [Cucumis melo] >KAA0038...	[more]
XP_031737980.1	1.41e-93	100.00	putative cytochrome c oxidase subunit 6b-like isoform X1 [Cucumis sativus]	[more]
XP_022932983.1	1.67e-78	81.02	cytochrome c oxidase subunit 6b-3-like [Cucurbita moschata]	[more]

BLAST of CsGy3G044560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH8	6.79e-109	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G910720 PE=4 SV=1	[more]
A0A5D3E4S8	4.81e-95	90.07	Putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CQ05	4.81e-95	90.07	putative cytochrome c oxidase subunit 6b-like OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A6J1F3D0	8.08e-79	81.02	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1IE20	3.63e-73	76.81	cytochrome c oxidase subunit 6b-3-like OS=Cucurbita maxima OX=3661 GN=LOC1114718...	[more]

BLAST of CsGy3G044560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28060.1	3.1e-30	72.86	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G57815.1	1.6e-29	70.00	Cytochrome c oxidase, subunit Vib family protein	[more]
AT1G22450.1	3.5e-29	47.66	cytochrome C oxidase 6B	[more]
AT1G32710.1	1.5e-27	46.67	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 74..149 e-value: 1.1E-31 score: 110.6
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 79..148
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 86..140 e-value: 6.6E-17 score: 61.5
IPR003213	Cytochrome c oxidase, subunit VIb	CDD	cd00926	Cyt_c_Oxidase_VIb	coord: 80..148 e-value: 7.39233E-38 score: 122.031
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74
None	No IPR available	PANTHER	PTHR46281	CYTOCHROME C OXIDASE SUBUNIT 6B	coord: 5..149
None	No IPR available	PANTHER	PTHR46281:SF14	CYTOCHROME C OXIDASE SUBUNIT 6B-1	coord: 5..149
None	No IPR available	PROSITE	PS51808	CHCH	coord: 93..136 score: 12.185339

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G044560.1	CsGy3G044560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV