CsGy3G043400 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G043400
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein 6, chloroplastic
Location	Gy14Chr3: 40354591 .. 40355116 (-)
RNA-Seq Expression	CsGy3G043400
Synteny	CsGy3G043400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAAGATAACGAATGTAATCCCATTTGATCGGTTTGTATTTGCCTTTCTGACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACATTTTTGGGCTGTAAGATTTCGGTTCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGCCGGAAATTTGCTGATTGAATGCTCGTCGAGGCCCAACAAGAAGGCGACAGCACATCACATGAAAACAAGGCCACGGAAATCCCAGCCATGGGACATTCGTCGTAAGCCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCAGACTGGACCTTGGTTTCATCCGTCTCCGGCGATGAAAACGTCGAGATAGCTTCGATTTCTTCGTCTGCTCAAGCACCGGTTACTAGCGAGTAACACTAGTAATTCTTCTCTTTTTTCTTTTGTTTTTCCTGTATTATCATTTGTATCATCGACATTTTGATTGAACTTTTATTGAGACAATTGTGTGGTTTTTCAATCTCTATTTTTGTTAATTATGGTATCTGGA

mRNA sequence

CGAAGATAACGAATGTAATCCCATTTGATCGGTTTGTATTTGCCTTTCTGACGCTCTCGCTCCGAAGGAACAATGTCGATTTCCACATTTTTGGGCTGTAAGATTTCGGTTCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGCCGGAAATTTGCTGATTGAATGCTCGTCGAGGCCCAACAAGAAGGCGACAGCACATCACATGAAAACAAGGCCACGGAAATCCCAGCCATGGGACATTCGTCGTAAGCCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCAGACTGGACCTTGGTTTCATCCGTCTCCGGCGATGAAAACGTCGAGATAGCTTCGATTTCTTCGTCTGCTCAAGCACCGGTTACTAGCGAGTAACACTAGTAATTCTTCTCTTTTTTCTTTTGTTTTTCCTGTATTATCATTTGTATCATCGACATTTTGATTGAACTTTTATTGAGACAATTGTGTGGTTTTTCAATCTCTATTTTTGTTAATTATGGTATCTGGA

Coding sequence (CDS)

ATGTCGATTTCCACATTTTTGGGCTGTAAGATTTCGGTTCCGCCATTGTTGAACTCATCTGCAAGCAAAGCAGCTCCATGCTCCGCCGGAAATTTGCTGATTGAATGCTCGTCGAGGCCCAACAAGAAGGCGACAGCACATCACATGAAAACAAGGCCACGGAAATCCCAGCCATGGGACATTCGTCGTAAGCCGACTGTGTATCCTCCTCTGCCGCCTCTTCCACCAGACTGGACCTTGGTTTCATCCGTCTCCGGCGATGAAAACGTCGAGATAGCTTCGATTTCTTCGTCTGCTCAAGCACCGGTTACTAGCGAGTAA

Protein sequence

MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE*

Homology

[Close]

BLAST of CsGy3G043400 vs. ExPASy Swiss-Prot
Match: P82411 (50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-20
Identity = 52/111 (46.85%), Postives = 71/111 (63.96%), Query Frame = 0


Query: 1   MSISTFLGCK-ISVPPLLNSSA----------SKAAPCSAGNLLIECSSRPNKKATAHHM 60
           MS+S   G + +++P +L +S+          S    C  G + IECSSRP KK TAHHM
Sbjct: 1   MSVSAIFGARVVTIPSVLRTSSVDGRTVKLQPSTGGSCGGGVITIECSSRPQKKGTAHHM 60

Query: 61  KTRPRKSQPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQ 101
           KTRP+K+  WDI+R P VYPPLPPLP +WT+VSS   + +   ++ SSSA+
Sbjct: 61  KTRPKKTARWDIKRGPAVYPPLPPLPAEWTIVSSAVDEADSSSSTTSSSAE 111

[Close]

BLAST of CsGy3G043400 vs. ExPASy Swiss-Prot
Match: P11892 (50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.3e-18
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 0


Query: 2  SISTFLGCKISVPP---LLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQP 61
          S+S+  GC +S+ P   L N +       + G LLIECSSRP KK+TAHHMKTRPRKS+ 
Sbjct: 3  SVSSIFGCGVSMAPNSSLRNKAIRTERRSACGGLLIECSSRPQKKSTAHHMKTRPRKSRL 62

Query: 62 WDIRRKPTVYPPLPPLPPDWTLV 82
           D  RKPTVY PLPPLPPD+T+V
Sbjct: 63 SDRNRKPTVYAPLPPLPPDFTIV 85

[Close]

BLAST of CsGy3G043400 vs. ExPASy Swiss-Prot
Match: Q9FKP0 (50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-16
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKS 60
          MS+S   G  I    + P L      K        ++IECSSRP KK+TAHH KTRP+K+
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS 95
          QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

[Close]

BLAST of CsGy3G043400 vs. NCBI nr
Match: XP_011652886.1 (50S ribosomal protein 6, chloroplastic [Cucumis sativus])

HSP 1 Score: 207 bits (527), Expect = 2.93e-67
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of CsGy3G043400 vs. NCBI nr
Match: XP_008466097.1 (PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 50S ribosomal protein 6 [Cucumis melo var. makuwa] >TYK31235.1 50S ribosomal protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 197 bits (501), Expect = 2.72e-63
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CsGy3G043400 vs. NCBI nr
Match: XP_023536142.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 179 bits (453), Expect = 5.87e-56
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CsGy3G043400 vs. NCBI nr
Match: XP_022975752.1 (50S ribosomal protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 178 bits (451), Expect = 1.19e-55
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFSGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CsGy3G043400 vs. NCBI nr
Match: XP_022936242.1 (50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 177 bits (448), Expect = 3.40e-55
Identity = 91/107 (85.05%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSIST+ G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWT VSS+S DE VE+AS I+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTAVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL
Match: A0A0A0LHS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1)

HSP 1 Score: 207 bits (527), Expect = 1.42e-67
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106

[Close]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL
Match: A0A5A7TB88 (50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005220 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 1.32e-63
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL
Match: A0A1S3CQF4 (50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 PE=4 SV=1)

HSP 1 Score: 197 bits (501), Expect = 1.32e-63
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTFLGCKISVPPLLNSSASKAAPCS GNL IECSSRPNKKATAHHMKTRP+KSQPWD
Sbjct: 1   MSISTFLGCKISVPPLLNSSASKAAPCSGGNLPIECSSRPNKKATAHHMKTRPKKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIASISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEI S SSSAQAP+TSE
Sbjct: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIVSTSSSAQAPLTSE 106

[Close]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL
Match: A0A6J1IDX3 (50S ribosomal protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111476133 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 5.74e-56
Identity = 92/107 (85.98%), Postives = 99/107 (92.52%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSISTF G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTFSGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWT+VSS+S DE VE+AS I+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTVVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL
Match: A0A6J1F7W7 (50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111442914 PE=4 SV=1)

HSP 1 Score: 177 bits (448), Expect = 1.65e-55
Identity = 91/107 (85.05%), Postives = 98/107 (91.59%), Query Frame = 0


Query: 1   MSISTFLGCKISVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKSQPWD 60
           MSIST+ G +ISVPPLLNSSASK APCS GNL+IECSSRPNKKATAHHMKTRPRKSQPWD
Sbjct: 1   MSISTYFGGRISVPPLLNSSASKTAPCSGGNLVIECSSRPNKKATAHHMKTRPRKSQPWD 60

Query: 61  IRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS-ISSSAQAPVTSE 106
           IRRKPTVYPPLPPLPPDWT VSS+S DE VE+AS I+SSAQAP T+E
Sbjct: 61  IRRKPTVYPPLPPLPPDWTAVSSISSDEIVEVASSIASSAQAPPTTE 107

[Close]

BLAST of CsGy3G043400 vs. TAIR 10
Match: AT5G17870.1 (plastid-specific 50S ribosomal protein 6 )

HSP 1 Score: 86.7 bits (213), Expect = 1.3e-17
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 1  MSISTFLGCKI----SVPPLLNSSASKAAPCSAGNLLIECSSRPNKKATAHHMKTRPRKS 60
          MS+S   G  I    + P L      K        ++IECSSRP KK+TAHH KTRP+K+
Sbjct: 1  MSVSAIFGTGIVTVAASPVLRQFQVPKLGNGGGLGMVIECSSRPQKKSTAHHRKTRPKKT 60

Query: 61 QPWDIRRKPTVYPPLPPLPPDWTLVSSVSGDENVEIAS 95
          QPWDI+RKPTVY PLPPLP +W+  +  S D     A+
Sbjct: 61 QPWDIKRKPTVYAPLPPLPAEWSPFTLASDDGGAATAA 98

The following BLAST results are available for this feature:

BLAST of CsGy3G043400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82411	3.5e-20	46.85	50S ribosomal protein 6, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP6 PE=...	[more]
P11892	3.3e-18	59.04	50S ribosomal protein 6, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP6 PE=3 SV...	[more]
Q9FKP0	1.8e-16	47.96	50S ribosomal protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP6 ...	[more]

BLAST of CsGy3G043400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652886.1	2.93e-67	100.00	50S ribosomal protein 6, chloroplastic [Cucumis sativus]	[more]
XP_008466097.1	2.72e-63	94.34	PREDICTED: 50S ribosomal protein 6, chloroplastic [Cucumis melo] >KAA0038635.1 5...	[more]
XP_023536142.1	5.87e-56	85.98	50S ribosomal protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
XP_022975752.1	1.19e-55	85.98	50S ribosomal protein 6, chloroplastic [Cucurbita maxima]	[more]
XP_022936242.1	3.40e-55	85.05	50S ribosomal protein 6, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of CsGy3G043400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHS7	1.42e-67	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G894500 PE=4 SV=1	[more]
A0A5A7TB88	1.32e-63	94.34	50S ribosomal protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CQF4	1.32e-63	94.34	50S ribosomal protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503622 P...	[more]
A0A6J1IDX3	5.74e-56	85.98	50S ribosomal protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC1114761...	[more]
A0A6J1F7W7	1.65e-55	85.05	50S ribosomal protein 6, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]

BLAST of CsGy3G043400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17870.1	1.3e-17	47.96	plastid-specific 50S ribosomal protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020526	Ribosomal protein L6, chloroplast	PFAM	PF17257	DUF5323	coord: 28..86 e-value: 4.9E-38 score: 128.8
IPR020526	Ribosomal protein L6, chloroplast	PANTHER	PTHR36798	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..72
None	No IPR available	PANTHER	PTHR36798:SF2	50S RIBOSOMAL PROTEIN 6, CHLOROPLASTIC	coord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G043400.2	CsGy3G043400.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome