CsGy3G042845 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G042845
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionRNase H domain-containing protein
LocationGy14Chr3: 39857823 .. 39858320 (+)
RNA-Seq ExpressionCsGy3G042845
SyntenyCsGy3G042845
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCAGTGGCACTAGCTAGGTTGTTTGTTATTCTGCTGGAGCCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTACTAATCTTATTAATTCCATGAAGTATAAGTCTTTGATTTTAACAGAGTCGTTGGGTTTTGTTGATGGTATGTGTGATTTCTTTTGCTTGTTGTGCACGCTCTGCGAATAAGGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

mRNA sequence

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Coding sequence (CDS)

ATGTTGATGACAAGCGAGAGCCCAAGAAGTCAGGAGATTTGGATGGCGTCTAATGCTGATTTTTGGAAGTTCAACTTGGATGCTTCTTGGAATGATGTTGAGGAGATCACCTTTATCCTAGCTGGTTGTGCGAGAGTGGAGGTTAAATGGCCTAAAGAGGTTCTTGAAGCATTAGCCAGGATTAGAGGTTTGAGTGTACATTCTGATTACTTCGGTCATGAGTATGTTCTCATATGGTTGTGGAATCTGATTGTTGCTCATCACCCAAGTCGCATTGCTGTTTGGGGATTAGAAGAGTTTTTTTTTTCTAGGCATAATGATATGGTTAGGATCCTGTGTAATATTTGA

Protein sequence

MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALARIRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI*
Homology
[Close]
BLAST of CsGy3G042845 vs. NCBI nr
Match: KGN60244.1 (hypothetical protein Csa_002227 [Cucumis sativus])

HSP 1 Score: 249 bits (635), Expect = 1.90e-83
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

[Close]
BLAST of CsGy3G042845 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (284), Expect = 2.65e-30
Identity = 58/88 (65.91%), Postives = 63/88 (71.59%), Query Frame = 0 

Query: 3  MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT------------FILAGCARVEVKW 62
          MTSES RSQ+IWM+    FW+FNLDASWNDVEEI+            FILA C R EVKW
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKW 60

Query: 63 PKEVLEALARIRGLSVHSDYFGHEYVLI 78
          P EVLEALA  RGL V+SDYFGHE VLI
Sbjct: 61 PMEVLEALATNRGLIVYSDYFGHEDVLI 88

[Close]
BLAST of CsGy3G042845 vs. ExPASy TrEMBL
Match: A0A0A0LGW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 249 bits (635), Expect = 9.18e-84
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0 

Query: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60
           MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR
Sbjct: 1   MLMTSESPRSQEIWMASNADFWKFNLDASWNDVEEITFILAGCARVEVKWPKEVLEALAR 60

Query: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115
           IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI
Sbjct: 61  IRGLSVHSDYFGHEYVLIWLWNLIVAHHPSRIAVWGLEEFFFSRHNDMVRILCNI 115

[Close]
BLAST of CsGy3G042845 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 114 bits (284), Expect = 1.28e-30
Identity = 58/88 (65.91%), Postives = 63/88 (71.59%), Query Frame = 0 

Query: 3  MTSESPRSQEIWMASNADFWKFNLDASWNDVEEIT------------FILAGCARVEVKW 62
          MTSES RSQ+IWM+    FW+FNLDASWNDVEEI+            FILA C R EVKW
Sbjct: 1  MTSESTRSQKIWMSPYVGFWRFNLDASWNDVEEISGTSWVVRDSAGAFILASCERAEVKW 60

Query: 63 PKEVLEALARIRGLSVHSDYFGHEYVLI 78
          P EVLEALA  RGL V+SDYFGHE VLI
Sbjct: 61 PMEVLEALATNRGLIVYSDYFGHEDVLI 88

The following BLAST results are available for this feature:
BLAST of CsGy3G042845 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G042845 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN60244.11.90e-83100.00hypothetical protein Csa_002227 [Cucumis sativus][more]
KAA0038679.12.65e-3065.91hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
BLAST of CsGy3G042845 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW59.18e-84100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1[more]
A0A5D3E6P61.28e-3065.91RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of CsGy3G042845 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G042845.1CsGy3G042845.1mRNA