CsGy3G042395 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G042395
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Pentatricopeptide repeat-containing protein
Location	Gy14Chr3: 39497280 .. 39498108 (-)
RNA-Seq Expression	CsGy3G042395
Synteny	CsGy3G042395

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTTCTGACTCTTTCCATATCTACACACAAAAAAGCAAAATTAAAAATGAACTCTTTCGGCTGCTCTTTTCTTGTGTTTAAGAACAAACCAATCTCAATTCCCTTTTAAACCTACCATCTCCATTTGATCTCCATTTCTCTCTCAACCTTTCTACCCTTATTTCATCGACCCTTTTGGTTTTTAGTTCTAATTTTCATCTTTGAAGCTTCATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGTATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAGTTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCTGTTGAATTGCGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGATTCTGAGCCTGATAATCTTTCCAGATCTTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGAAACTTATTGGTAATCTTATGGGTTTTGTGTAATTTTTGTAACCCATTTTCCAAATTCCAAATGATTAGTTCTAAGTTGTGATTATGTGTTTGTTTCAATGAGACTGAGTTTGTGTTCTGTTTATACTTTTCTCTAAATAGAAGAAAGAAGAAGAAGAAGAAGAAGAGGAATATACTTTGTTGCAAATTACTGGAAAGTTTTCAAAGTTTATTCATTGTTTTAGCTGTAAGTAAAGCAAGATTTTCCATAGAATTTCTTTGAAAAAATTTAGCGCTTTAGTAACTATTTGGTTTCATTCGTCAGTTTCTAAG

mRNA sequence

CACTTTCTGACTCTTTCCATATCTACACACAAAAAAGCAAAATTAAAAATGAACTCTTTCGGCTGCTCTTTTCTTGTGTTTAAGAACAAACCAATCTCAATTCCCTTTTAAACCTACCATCTCCATTTGATCTCCATTTCTCTCTCAACCTTTCTACCCTTATTTCATCGACCCTTTTGGTTTTTAGTTCTAATTTTCATCTTTGAAGCTTCATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGTATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAGTTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCTGTTGAATTGCGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGATTCTGAGCCTGATAATCTTTCCAGATCTTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGAAACTTATTGGTAATCTTATGGGTTTTGTGTAATTTTTGTAACCCATTTTCCAAATTCCAAATGATTAGTTCTAAGTTGTGATTATGTGTTTGTTTCAATGAGACTGAGTTTGTGTTCTGTTTATACTTTTCTCTAAATAGAAGAAAGAAGAAGAAGAAGAAGAAGAGGAATATACTTTGTTGCAAATTACTGGAAAGTTTTCAAAGTTTATTCATTGTTTTAGCTGTAAGTAAAGCAAGATTTTCCATAGAATTTCTTTGAAAAAATTTAGCGCTTTAGTAACTATTTGGTTTCATTCGTCAGTTTCTAAG

Coding sequence (CDS)

ATGGGAATGAAATGGCGAAATTCACGTAGTCAAAGTATCAGATTGGGACAGAGCTGTGTTTCTTCAAATGAACAAGAAAGCAAAAGATTGGGATGGCAAATTTTGTGGAGAAAGTTGAAGAAGGAGAAGAGAAAAATGTTCAGTTGTTCTTCTGTTGAATTGCGTTCTTCTTATAATCCAAATGCTTATCACTTAAATTTTGATGAAGAAAATTGGGATTCTGAGCCTGATAATCTTTCCAGATCTTTCTCTGCTCGTTTTGCTGATCCTTCAATTGTTTCAAGAAACTTGAGATTGTTGGATTGA

Protein sequence

MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD*

Homology

[Close]

BLAST of CsGy3G042395 vs. NCBI nr
Match: KGN60340.2 (hypothetical protein Csa_000895 [Cucumis sativus])

HSP 1 Score: 203 bits (516), Expect = 4.32e-58
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1    MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60
            MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP
Sbjct: 1030 MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 1089

Query: 61   NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
            NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 1090 NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 1130

[Close]

BLAST of CsGy3G042395 vs. NCBI nr
Match: XP_023536137.1 (uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (434), Expect = 3.23e-53
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLLGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CsGy3G042395 vs. NCBI nr
Match: XP_022936244.1 (uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothetical protein SDJN02_13350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171 bits (434), Expect = 3.23e-53
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CsGy3G042395 vs. NCBI nr
Match: KAG6591653.1 (hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 169 bits (427), Expect = 3.78e-52
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60
           MG+KWRNSRSQSIRLGQSC S NEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSWNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CsGy3G042395 vs. NCBI nr
Match: ONI33933.1 (hypothetical protein PRUPE_1G454200 [Prunus persica])

HSP 1 Score: 93.2 bits (230), Expect = 4.09e-22
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKM-FSCSSVELRS-S 60
           MG+K W NSRSQS+RLGQ  + SN  +  R GWQ  W+K K +K+K  FS S+V  ++ S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLR-LLD 101
           Y+P  Y  NFD      EPDNLSRSFSARFADPS++  N R LLD
Sbjct: 61  YDPKTYSKNFDRGMGSMEPDNLSRSFSARFADPSMILHNNRNLLD 105

[Close]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL
Match: A0A0A0LJH9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1)

HSP 1 Score: 203 bits (516), Expect = 4.70e-66
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60
           MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP
Sbjct: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSVELRSSYNP 60

Query: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD
Sbjct: 61  NAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101

[Close]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL
Match: A0A6J1F7R9 (uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC111442916 PE=4 SV=1)

HSP 1 Score: 171 bits (434), Expect = 1.57e-53
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 0


Query: 1   MGMKWRNSRSQSIRLGQSCVSSNEQESKRL-GWQILWRKLKKEKRKMFSCSSVELRSSYN 60
           MG+KWRNSRSQSIRLGQSC SSNEQESKRL GWQILW+K KKEKR++FSCSSVELRSSYN
Sbjct: 1   MGIKWRNSRSQSIRLGQSCGSSNEQESKRLFGWQILWQKFKKEKRRIFSCSSVELRSSYN 60

Query: 61  PNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLRLLD 101
           PNAY LNF++ENW S+PD+L RSFSARFADPSIVSR+ RLLD
Sbjct: 61  PNAYRLNFEQENWGSDPDDLCRSFSARFADPSIVSRSFRLLD 102

[Close]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL
Match: A0A251RD41 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.98e-22
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKM-FSCSSVELRS-S 60
           MG+K W NSRSQS+RLGQ  + SN  +  R GWQ  W+K K +K+K  FS S+V  ++ S
Sbjct: 1   MGIKEWCNSRSQSMRLGQPYMPSNYNKPDRPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPSIVSRNLR-LLD 101
           Y+P  Y  NFD      EPDNLSRSFSARFADPS++  N R LLD
Sbjct: 61  YDPKTYSKNFDRGMGSMEPDNLSRSFSARFADPSMILHNNRNLLD 105

[Close]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL
Match: A0A6J5TRF8 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.99e-22
Identity = 58/105 (55.24%), Postives = 71/105 (67.62%), Query Frame = 0


Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKM-FSCSSVELRS-S 60
           MG+K W NSRSQSIRLGQ  +SSN  +  + GWQ  W+K K +K+K  FS S+V  ++ S
Sbjct: 1   MGIKEWCNSRSQSIRLGQPYMSSNYNKPDQPGWQRFWKKFKMDKKKKSFSSSTVTPQAAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPS-IVSRNLRLLD 101
           Y+P  Y  NFD      EPDNLSR FSARFADPS I+ +N  LLD
Sbjct: 61  YDPKTYSKNFDPGMGSMEPDNLSRCFSARFADPSMILHKNRNLLD 105

[Close]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL
Match: A0A5N5I1S5 (Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_034369 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 9.25e-21
Identity = 51/105 (48.57%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 1   MGMK-WRNSRSQSIRLGQSCVSSNEQESKRLGWQILWRKLKKEKRKMFSCSSV--ELRSS 60
           MG++ WRNSRSQSIRLG +    +     + GWQ  W++ K E++K+F  S+V  + ++S
Sbjct: 1   MGIREWRNSRSQSIRLGHNYDMPSNYNKSQPGWQKFWKRFKIERKKIFGSSTVMPQAQAS 60

Query: 61  YNPNAYHLNFDEENWDSEPDNLSRSFSARFADPS-IVSRNLRLLD 101
           Y+P+ Y  NFD+     EPDNL RSFSARFADPS ++  N  LLD
Sbjct: 61  YDPDTYSKNFDQGTQWMEPDNLPRSFSARFADPSRVLHGNRNLLD 105

[Close]

BLAST of CsGy3G042395 vs. TAIR 10
Match: AT2G25735.1 (unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.8e-05
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 7   NSRSQSIRLGQSCVSSNEQESKRLGWQIL--WRKLKKEKRKMFSCSSVELRSSYNPNAYH 66
           +S  ++I LG+   S  EQ+  +   ++L  W+ L  + + + S +S     +Y P  Y 
Sbjct: 20  SSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKLLPSRASSTKVVAYEPCDYS 79

Query: 67  LNFDE-ENW--DSEPDNLSRSFSARFADPSIVSRNLRLL 101
           LNFD+   W    EP+NLSRSFS RFADP+ +     LL
Sbjct: 80  LNFDQGPGWHDHDEPENLSRSFSCRFADPTRIRETRFLL 118

The following BLAST results are available for this feature:

BLAST of CsGy3G042395 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G042395 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60340.2	4.32e-58	100.00	hypothetical protein Csa_000895 [Cucumis sativus]	[more]
XP_023536137.1	3.23e-53	84.31	uncharacterized protein LOC111797385 [Cucurbita pepo subsp. pepo]	[more]
XP_022936244.1	3.23e-53	84.31	uncharacterized protein LOC111442916 [Cucurbita moschata] >KAG7024534.1 hypothet...	[more]
KAG6591653.1	3.78e-52	83.33	hypothetical protein SDJN03_13999, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ONI33933.1	4.09e-22	55.24	hypothetical protein PRUPE_1G454200 [Prunus persica]	[more]

BLAST of CsGy3G042395 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJH9	4.70e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G888550 PE=4 SV=1	[more]
A0A6J1F7R9	1.57e-53	84.31	uncharacterized protein LOC111442916 OS=Cucurbita moschata OX=3662 GN=LOC1114429...	[more]
A0A251RD41	1.98e-22	55.24	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G454200 PE=4 SV=1	[more]
A0A6J5TRF8	3.99e-22	55.24	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8866 PE=4 SV...	[more]
A0A5N5I1S5	9.25e-21	48.57	Pentatricopeptide repeat-containing protein OS=Pyrus ussuriensis x Pyrus communi...	[more]

BLAST of CsGy3G042395 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G25735.1	1.8e-05	36.36	unknown protein; Has 31 Blast hits to 31 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	STRESS INDUCED PROTEIN-RELATED	coord: 8..100
None	No IPR available	PANTHER	PTHR33168:SF35	SUBFAMILY NOT NAMED	coord: 8..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G042395.1	CsGy3G042395.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity