CsGy3G040260 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G040260
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionprotein RADIALIS-like 3
LocationGy14Chr3: 37751949 .. 37753242 (+)
RNA-Seq ExpressionCsGy3G040260
SyntenyCsGy3G040260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGGTCGAAGTCGAACCCACTTGCCCATAGAATTCGGTTTGTGTAATTGGAATTAGTATTTAAACCATCAGAAAATGGCAGCAAAAAAGGAAAAAAACAATCGAGCACTGATCTGGAAAAATTGATAGTGTGTACGAGGGGGAGTTGATTTGATAGGATGGGGTCTGGATCCAATTGGACGGCCAAACAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCCAGAGCCGTCGGGGGCAAGACCGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGTACCTGCCGCCCGAGGATTTTACTTTCTTGACCAAGAACAAAGGTAAGCTAAAACAAACCCCTCCCCATTTTCTTTTCTTTTCTTTTCTATTTTAAATTTTAATTTTGGGGTAATGTATTTCTAAAATCCACTTTTAATTATAATTTGTTTTCTTGTTTTGAAAATAACAACAACAACAACAACAAGACTAAAACTTTTGCACTCAAAACTTTGTTCTATGTTTCACAAATGTAGCCAAAAGTTTTAACTGAGTATTTCAAGGAAAAGCTACTAAGAAAGTATATTACTGATATCTAATTGAGTCTAAAAGGAGGAGACTTCATTTTCAACTTTGGTTATAGTTTCATTCATTCACCAGGATGGTTTGTTTTACCTTTCTATAAGATTTAATTAAGAGCGATGATTTTGATTAATTAATTAATTAAGTACAACAAACACATATACATAAATAAATACATATATATTAACTTAGAGGAAAGCATTAAATTAGTTAAAAATTGATATAAATTGTAATGTGATGTAATTCTGGTTTATGTGATTAATGCAGGATGAGGAGTCTGCAATTGAATTGAAGTAGGAATGTGGGAAGAGAGGAGTTCTACGTTTCTATCTCTCCATTAACTTTTTCTTCAGCTAAAACTTGAAATTTGCAAGCAACAAATATTTATGAAATATGAAGGCCAAATGTAGCTAAGGCAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTACCTTTTATCTTTTATCTTTTATCAACTGTCTCCAAATTGTTTTATATTAAATAAATACTACCTTTGGTATAGTTTAAAACACATCAAAATTGGAGGAAAGGATCACGGTTGAGTTTACTATGTTCTTAAACTCCAAATAATATTAATTAATAAAAAAAAACTCGAACAAATAA

mRNA sequence

AGAAGGTCGAAGTCGAACCCACTTGCCCATAGAATTCGGTTTGTGTAATTGGAATTAGTATTTAAACCATCAGAAAATGGCAGCAAAAAAGGAAAAAAACAATCGAGCACTGATCTGGAAAAATTGATAGTGTGTACGAGGGGGAGTTGATTTGATAGGATGGGGTCTGGATCCAATTGGACGGCCAAACAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCCAGAGCCGTCGGGGGCAAGACCGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGTACCTGCCGCCCGAGGATTTTACTTTCTTGACCAAGAACAAAGGATGAGGAGTCTGCAATTGAATTGAAGTAGGAATGTGGGAAGAGAGGAGTTCTACGTTTCTATCTCTCCATTAACTTTTTCTTCAGCTAAAACTTGAAATTTGCAAGCAACAAATATTTATGAAATATGAAGGCCAAATGTAGCTAAGGCAGTTTTAATTTTCTTCACCCATCTTCAATTGTAATTTCTAGTTTTTACCTTTTATCTTTTATCTTTTATCAACTGTCTCCAAATTGTTTTATATTAAATAAATACTACCTTTGGTATAGTTTAAAACACATCAAAATTGGAGGAAAGGATCACGGTTGAGTTTACTATGTTCTTAAACTCCAAATAATATTAATTAATAAAAAAAAACTCGAACAAATAA

Coding sequence (CDS)

ATGGGGTCTGGATCCAATTGGACGGCCAAACAGAACAAAGTGTTTGAAAATGCTTTAGCCATCTACGACAAAGACACGCCGGAGCGGTGGCAGAATCTGGCCAGAGCCGTCGGGGGCAAGACCGCGGAGGAAGTGAAACGACACTACGAAAGGTTGGTTGAAGATGTGAACAAGATCGAAACCGGCCAAGTTCCTTTCCCTAATTACAGAAGGTCCGTACCTGCCGCCCGAGGATTTTACTTTCTTGACCAAGAACAAAGGATGAGGAGTCTGCAATTGAATTGA

Protein sequence

MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN*
Homology
[Close]
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.5e-27
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0 

Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
           VPFPNYR S     G     +E+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.2e-25
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0 

Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
           G VPFP+Y+ +   +      D+E+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.2e-24
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 0 

Query: 2  GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
          GSG  W+AK+NK FE ALA+YDKDTP+RW N+ARAV G+T EEVK+HYE LVED+  IE+
Sbjct: 6  GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES 65

Query: 62 GQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
          G+VPFPNYR +     G      E+R R+L++
Sbjct: 66 GKVPFPNYRTT-----GGNMKTDEKRFRNLKI 92

[Close]
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.0e-23
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M S ++WT K+NK+FE ALA YD+DTP+RW N+ARAVGGK+AEEV+RHYE L+ DVN IE
Sbjct: 6  MSSSASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELLIRDVNDIE 65

Query: 61 TGQVPFPNYR 71
          +G+ P PNYR
Sbjct: 66 SGRYPHPNYR 75

[Close]
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.9e-23
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
          P PNY+     +R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]
BLAST of CsGy3G040260 vs. NCBI nr
Match: XP_004147867.1 (protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_001999 [Cucumis sativus])

HSP 1 Score: 196 bits (497), Expect = 4.61e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
          TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]
BLAST of CsGy3G040260 vs. NCBI nr
Match: XP_038905673.1 (protein RADIALIS-like 3 [Benincasa hispida])

HSP 1 Score: 178 bits (452), Expect = 3.39e-56
Identity = 85/94 (90.43%), Postives = 90/94 (95.74%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGS+WTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSHWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
          TGQVPFPNYRRS PA RGF F+D+EQRMRSL+L+
Sbjct: 61 TGQVPFPNYRRSGPAVRGFCFVDEEQRMRSLRLH 94

[Close]
BLAST of CsGy3G040260 vs. NCBI nr
Match: XP_008465612.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK19652.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 175 bits (444), Expect = 4.55e-55
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQR 87
          TGQVPFPNYRRS PAARGF FLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of CsGy3G040260 vs. NCBI nr
Match: XP_022138113.1 (protein RADIALIS-like 3 [Momordica charantia])

HSP 1 Score: 166 bits (421), Expect = 4.09e-51
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1   MGSG-SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKI 60
           MGSG SNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
           ETGQVPFPNYR+S    RGF F+D+E+RMRSL+L+
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]
BLAST of CsGy3G040260 vs. NCBI nr
Match: XP_022941099.1 (protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo] >KAG6608538.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037861.1 Protein RADIALIS-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163 bits (412), Expect = 4.30e-50
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match: A0A0A0LGK8 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 SV=1)

HSP 1 Score: 196 bits (497), Expect = 2.23e-63
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
          TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN
Sbjct: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94

[Close]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match: A0A5D3D7Z0 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00440 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 2.20e-55
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQR 87
          TGQVPFPNYRRS PAARGF FLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match: A0A1S3CPA0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1)

HSP 1 Score: 175 bits (444), Expect = 2.20e-55
Identity = 84/87 (96.55%), Postives = 84/87 (96.55%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          MGSGSNWTAKQNKVFENALAIYDKDTPERW NLARAVGGKTAEEVKRHYERLVEDVNKIE
Sbjct: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWHNLARAVGGKTAEEVKRHYERLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQR 87
          TGQVPFPNYRRS PAARGF FLDQEQR
Sbjct: 61 TGQVPFPNYRRSGPAARGFCFLDQEQR 87

[Close]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match: A0A6J1CC55 (protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 1.98e-51
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 0 

Query: 1   MGSG-SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKI 60
           MGSG SNWTAKQNKVFENALA+YDKDTP+RW NLARAVGGKTAEEVKRHYERLV+DVNKI
Sbjct: 26  MGSGGSNWTAKQNKVFENALAVYDKDTPDRWHNLARAVGGKTAEEVKRHYERLVDDVNKI 85

Query: 61  ETGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
           ETGQVPFPNYR+S    RGF F+D+E+RMRSL+L+
Sbjct: 86  ETGQVPFPNYRKSAHGPRGFCFIDEEKRMRSLRLH 120

[Close]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match: A0A6J1FM85 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 2.08e-50
Identity = 77/94 (81.91%), Postives = 84/94 (89.36%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE
Sbjct: 1  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIE 60

Query: 61 TGQVPFPNYRRSVPAARGFYFLDQEQRMRSLQLN 94
          +GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Sbjct: 61 SGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH 94

[Close]
BLAST of CsGy3G040260 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 121.7 bits (304), Expect = 3.2e-28
Identity = 57/91 (62.64%), Postives = 68/91 (74.73%), Query Frame = 0 

Query: 3  SGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETG 62
          S  +WTAKQNK FE ALA YD+DTP RWQN+A+ VGGKT EEVKRHYE LV+D+N IE G
Sbjct: 10 SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDINSIENG 69

Query: 63 QVPFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
           VPFPNYR S     G     +E+RMR+++L
Sbjct: 70 HVPFPNYRTSGGCTNG-RLSQEEKRMRNMRL 99

[Close]
BLAST of CsGy3G040260 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-26
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0 

Query: 2   GSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIET 61
           GSGS WT KQNK FE ALA+YD+DTP+RW N+ARAVGGKT EE KR Y+ LV D+  IE 
Sbjct: 10  GSGS-WTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIESIEN 69

Query: 62  GQVPFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
           G VPFP+Y+ +   +      D+E+RMRS++L
Sbjct: 70  GHVPFPDYKTTTGNSNRGRLRDEEKRMRSMKL 100

[Close]
BLAST of CsGy3G040260 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 108.6 bits (270), Expect = 2.8e-24
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYRRSVPAARGFYFLDQEQRMRSLQL 94
          P PNY+     +R     D  ++M++L++
Sbjct: 70 PLPNYKTFESNSRSINDFD-TRKMKNLKI 97

[Close]
BLAST of CsGy3G040260 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 5  SNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIETGQV 64
          S WT  QNK+FE ALA+YDKDTP+RW N+A+AVGGKT EEVKRHY+ LVED+  IETG+V
Sbjct: 10 SPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVEDLINIETGRV 69

Query: 65 PFPNYR 71
          P PNY+
Sbjct: 70 PLPNYK 75

[Close]
BLAST of CsGy3G040260 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 105.9 bits (263), Expect = 1.8e-23
Identity = 47/70 (67.14%), Postives = 58/70 (82.86%), Query Frame = 0 

Query: 1  MGSGSNWTAKQNKVFENALAIYDKDTPERWQNLARAVGGKTAEEVKRHYERLVEDVNKIE 60
          M S S+WT+KQNK+FE ALA+YDKDTP+RWQN+A+AVG K+AEEVKRHY+ LVED+  IE
Sbjct: 6  MSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVEDLMNIE 65

Query: 61 TGQVPFPNYR 71
             VP P Y+
Sbjct: 66 QDLVPLPKYK 75

The following BLAST results are available for this feature:
BLAST of CsGy3G040260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4JVB84.5e-2762.64Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q9SIJ53.2e-2558.70Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1[more]
Q58FS31.2e-2458.70Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
Q6NNN03.0e-2367.14Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q1A1733.9e-2357.30Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
BLAST of CsGy3G040260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004147867.14.61e-63100.00protein RADIALIS-like 3 [Cucumis sativus] >KGN59962.1 hypothetical protein Csa_0... [more]
XP_038905673.13.39e-5690.43protein RADIALIS-like 3 [Benincasa hispida][more]
XP_008465612.14.55e-5596.55PREDICTED: protein RADIALIS-like 3 [Cucumis melo] >KAA0041605.1 protein RADIALIS... [more]
XP_022138113.14.09e-5183.16protein RADIALIS-like 3 [Momordica charantia][more]
XP_022941099.14.30e-5081.91protein RADIALIS-like 3 [Cucurbita moschata] >XP_023525029.1 protein RADIALIS-li... [more]
BLAST of CsGy3G040260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGK82.23e-63100.00SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G857030 PE=4 S... [more]
A0A5D3D7Z02.20e-5596.55Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3CPA02.20e-5596.55protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103503253 PE=4 SV=1[more]
A0A6J1CC551.98e-5183.16protein RADIALIS-like 3 OS=Momordica charantia OX=3673 GN=LOC111009358 PE=4 SV=1[more]
A0A6J1FM852.08e-5081.91protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111446496 PE=4 SV=1[more]
BLAST of CsGy3G040260 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G39250.13.2e-2862.64RAD-like 1 [more]
AT2G21650.12.3e-2658.70Homeodomain-like superfamily protein [more]
AT1G75250.22.8e-2457.30RAD-like 6 [more]
AT1G75250.11.1e-2371.21RAD-like 6 [more]
AT1G19510.11.8e-2367.14RAD-like 5 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 3..55
e-value: 3.8E-7
score: 39.8
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 5..53
score: 6.306941
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 6..53
e-value: 1.91383E-6
score: 39.0958
NoneNo IPR availableGENE3D1.10.10.60coord: 1..66
e-value: 2.4E-24
score: 86.9
NoneNo IPR availablePANTHERPTHR43952:SF52MYB FAMILY TRANSCRIPTION FACTORcoord: 1..93
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..93
IPR017884SANT domainPROSITEPS51293SANTcoord: 2..57
score: 10.223239
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 6..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G040260.1CsGy3G040260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 DNA-binding transcription factor activity