CsGy3G040250 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G040250
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 37746321 .. 37746784 (+)
RNA-Seq Expression	CsGy3G040250
Synteny	CsGy3G040250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGGTTAGGTTGAAGAAAAATGAAGGGCGTAAAATTAAAGCTGAATATGAAAAATTGTTTATGGAGAAAGCGCTTGATTTTGAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGTAGGGAACGGTTTTGAAAAGGACGGGAAAAAGGCGATGATCGGAGAAAGAGAGAGAAATAAAAAATGAAAATATTCTTGTTTGAAGATTGTAGGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

mRNA sequence

ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

Coding sequence (CDS)

ATGTATAAATCACCTTTCTTCTCTCTCTCTCTAAACGACGCCGTTGGAGGAGTAAAATTCCGCACAGCGCCGCCGTCATTGAATCCGATGGAGAAATTAAAGCACCGGAAAATTGAATCTGTCGGCCAGAAAGTCAGCGATTATTCTCGGGCATCGGAATCAGGCACAGAGGCGGCGGCCCCGCCAATTTGTAGCGGAAACAATCGGAGAGAGAAAGAGAGATATGGCGATAAGGATTCTGAACATGAAATTTTGTTGAAGGAAAAAGGGATTGAATTCCACAATTGA

Protein sequence

MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAAPPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN*

Homology

[Close]

BLAST of CsGy3G040250 vs. NCBI nr
Match: KGN59961.1 (hypothetical protein Csa_000924 [Cucumis sativus])

HSP 1 Score: 192 bits (488), Expect = 1.17e-61
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60
          MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA
Sbjct: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60

Query: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95
          PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN
Sbjct: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95

[Close]

BLAST of CsGy3G040250 vs. ExPASy TrEMBL
Match: A0A0A0LIX4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857020 PE=4 SV=1)

HSP 1 Score: 192 bits (488), Expect = 5.67e-62
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60
          MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA
Sbjct: 1  MYKSPFFSLSLNDAVGGVKFRTAPPSLNPMEKLKHRKIESVGQKVSDYSRASESGTEAAA 60

Query: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95
          PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN
Sbjct: 61 PPICSGNNRREKERYGDKDSEHEILLKEKGIEFHN 95

The following BLAST results are available for this feature:

BLAST of CsGy3G040250 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G040250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59961.1	1.17e-61	100.00	hypothetical protein Csa_000924 [Cucumis sativus]	[more]

BLAST of CsGy3G040250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIX4	5.67e-62	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857020 PE=4 SV=1	[more]

BLAST of CsGy3G040250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..81

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G040250.2	CsGy3G040250.2	mRNA