CsGy3G038340 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G038340
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionDNA-directed RNA polymerase subunit
LocationGy14Chr3: 36064978 .. 36068014 (-)
RNA-Seq ExpressionCsGy3G038340
SyntenyCsGy3G038340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CATTTACAAACTAAGAGAATCTGCAGAGAAGGAAAATAAATAAGAAAGAAAGGCAAGCCCTAAGTAAATCAGATTTCCCTCGGAACCCACGAGTCACCCGCTTCCTCCATCTTCCTCGTCTCCGACCACGCCTCAGCCTCGCCACCACCGCCGGTGGTCAGTGTCAAAGCTCTCTGTTTTTTCTTTTTCTTTTTCTTTTTTATTTAAAAATGTAACTTAAATTATTAGTTAGTAATATGGCATCTTCATTCTCAAGCCAGGCCAATCATCAATTTCTTCCAAAGCTCAACCTAACCTCCTCTATTATTGAATTATTGAATTATTGAATGTTTGGTTGAGTAAGTGTAAAATGTATTTTGTGGGTTAAATTAAGTATCTTTATATTATTAATTTGGTGTTTTATGCTTTTTGTTAATTAAAATTTAGCATCTTTATGTTACATTTATATATGTAAAGAAAATATTTAAGAACTGGCGTATTTTCGAGCTCGATTTAGAAATTGGCGTTTCACTGTATCGTATAGTATTTGTATGGCTGTTGAGTGAGTGGATTGTATGTTTGATCCGTCTGATTATTGATTGATAAATGATGGGTTTGTGTTAGGACCTAGCTAATGGAGTTTTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTGTGTTGCTGAAATTTCTTTTTAGTTGTAAGGCCTCAAGTTGTTTGCTTCCCTTTTTTACCTATTAATTTCTCTTGTTCTGACTTAAGGATTGCCTTCTCGTGGTTCTACTATTCAGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGGTATACATCTTTCCCTTCTAGGTTCTTTTCTTTCCTCCTCTGTACATAGCCTTTGTTTTTTAATCAAAATTCCACCAGCTGGAGTTGGGGAAAGATATAATCAAATAGCTATTGCAAGGGCAATGACCTGATTCACCTTTAAAAAATTTTAAGTGCTCATGCATATGCACTTATATGATAGGCCAAATAAGTGTGGCAGACGGCAGTTATATTTCCTTTAATTAAATGAATTTATGAAAAGTCTAAGTCACCAAAAGTCAACAAGTACTTAGAAAGAAGCCAAATTGAACTTAGCTCAATGATAATTTGCATGGTCTTCCTCTCTCGTGTTGAAGGTTTGATCCCCATTCTAGTAGTTGTTGTGCTAAAAATACAAGTAGCTATGAAGAAAGAATCCCACCGTTTGAAGTCATGATTGAGTTGGAGTATTTTACAAATTGGCAACAGTACCGTTAACCCACATAATACTGTTTTTATGTTTAAACTTCCTTGAAGCTTAAAAATGAAGCGCTTTAAAGCTATTAGGCTCTATAAACTTCAAAACATTTCCATTTACATGACCAACACTCCATAAAAATATGGAGAATCAATTATTCCTTCTAAAAGGAAACACCAATTCAGTTTAGAGGAACAATGAGAACTTGTCCTGGAATAATGCGGTTAGGTTCACTGATGTTGAAGAGAATGATCACTTGAAAACTTTGCACTTTTTGGGAAGCTTTGACTTCCAATCCTCTTTCACAACTTCAGTAAGATAGTTGCCTTCCTATGGACTATAGATTGATTAAGATAGTTGATGACCTTATTTGAACATGGTTTATTCTATTGGTTGTACTACAATCGTGTTCTTGAATTCTAAATATTTGATTTTAAATTACTGCAAAAGTAATCCTTAAGCTGCAGTTCTTTAGTTGAAATTGACCCTTAGATATGTACTTTTTTGTATTACGAGGTTAACTTCTTAACAGATTACCTGGAGCTTTTATCCATACCATAAAAGCAATCCCTAATGAGTAATCTCTCCCATTTTTTCTTGTCATAATTTCATGCTTAAGAAAATTAGGTTTCTATCTGTAATGTTTTTTATGAGAGGAAGAAAGAAAAGTTTCTGGGTTGTGGCCTATCTCTACAACAAGGAAACGGGCGTTGAATAATATATGGTAATCATGATTAAAAGAATAATATGGTGATTCATTTTTTGAAGTTGTAGAACGTTAGTACAGCCTTATTACACAACTTATTATTGAATAGATGCAAAGTATTGGCACTATTTTGTTTTCTGAAAGTATAGGTAGGTGATATATTATAGAGAATGATAAACCTGTTGGGAACCAAGATAGTATAGTATGCCTTTGTCCCACATTAGTTAGAATAGAATGACCAATGTGGTACTTGAGTGGCCTGGCTCTCTCACCCCAATAGCTGGCTTTTGGAGTGTGGTTCTCCAAGATGCTTAAGTACCTAACAATTCTATCAGAGTGGTTAACGTTTCAGAGTGAAACGGGTGGAGGGTTCTGATCAAGCATGACTGAGTTATTGTTGGGAACCAAGGTAGTATGGATGCCTTTGTTCTACGTTGGTTAGAATGAAATGTCCAATGTAGTGCTTAATGGCTCGACTTTCCTGTCCTAATTGCTGGCTTTTGAGGTGTGGTTCTGTAAGGAATCAAAATGACGTTCCTTTGTTGTGTGCTTCTCTTTGTTCTCTAAACTGGTTTTTGTTTCTCTTTTTGCTATTTTGTAGCAACATGTCCAAATTGTGCGTTTGGGAAGGCTGCTTTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAGGATTAATTTATCATTACTGATTTTGTGTATGCTTCTTTTTTATTATTATTTTAACCCATTTTAGACGTAATTAATATGAATAAATTATTATCTTTTACATGATTAGCATCATGAATTTTGTTGGGACTTCAGAATGAGAATCGTATCACAATTGCACCTCTATGCTGTTTTGTTCTTAGTTTTGCATTTGAGAAAAATGTAATAAAAGAGTGGGGAGAAGAAAAGTTACCATG

mRNA sequence

CATTTACAAACTAAGAGAATCTGCAGAGAAGGAAAATAAATAAGAAAGAAAGGCAAGCCCTAAGTAAATCAGATTTCCCTCGGAACCCACGAGTCACCCGCTTCCTCCATCTTCCTCGTCTCCGACCACGCCTCAGCCTCGCCACCACCGCCGGTGGACCTAGCTAATGGAGTTTTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGCGTTTGGGAAGGCTGCTTTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAGGATTAATTTATCATTACTGATTTTGTGTATGCTTCTTTTTTATTATTATTTTAACCCATTTTAGACGTAATTAATATGAATAAATTATTATCTTTTACATGATTAGCATCATGAATTTTGTTGGGACTTCAGAATGAGAATCGTATCACAATTGCACCTCTATGCTGTTTTGTTCTTAGTTTTGCATTTGAGAAAAATGTAATAAAAGAGTGGGGAGAAGAAAAGTTACCATG

Coding sequence (CDS)

ATGGAGTTTTGCCCAACTTGCGGGAACATGCTGCAATTTGAGTTGCCCAATATGGGTAAATCTTCCAGGTTCTTCTGCCCAACTTGTCCATATGTGTCCTACTTGGAAAACAGGGTAAAAATAAAAAGAAAGCAACATCTGGTGAAAAAGGAATTAGAACCCATAATCTCTGATGACGATATGAAAAATGCAGCTCAAACCGAAGCAACATGTCCAAATTGTGCGTTTGGGAAGGCTGCTTTCATACAAATACAACTGAGATCAGCTGATGAACCTGCTACAACATTTTACAAGTGCATGAACGAAAACTGTCGACAGAATTGGCGCGAGGATTAA

Protein sequence

MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED*
Homology
[Close]
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match: Q9Y2Y1 (DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 8.4e-17
Identity = 45/109 (41.28%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDM 62
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFSCNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 63  KNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE 111
           +N   T  +CP C   +A F+Q+Q RSADEP TTFYKC N  C   WR+
Sbjct: 64  ENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match: Q9CQZ7 (DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-16
Identity = 45/109 (41.28%), Postives = 59/109 (54.13%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISD-DDM 62
           FCP CGN L  E     +  RF C TCPYV  +  +V  ++   L  KE++ ++      
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNITRKVTNRKYPKL--KEVDDVLGGAAAW 63

Query: 63  KNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE 111
           +N   T   CP C   +A F+Q+Q RSADEP TTFYKC N  C   WR+
Sbjct: 64  ENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match: Q2M2S7 (DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.2e-15
Identity = 44/108 (40.74%), Postives = 56/108 (51.85%), Query Frame = 0 

Query: 3   FCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDDMK 62
           FCP CGN L  E     +  RF C TCPYV  +  +V   RK   +K+  + +      +
Sbjct: 4   FCPGCGNGLIVE--EGQRCHRFACNTCPYVHNVTRKV-TNRKYPKLKEVDDELGGAAAWE 63

Query: 63  NAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRE 111
           N   T   CP C   +A F+Q+Q R ADEP TTFYKC N  C   WR+
Sbjct: 64  NVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGHRWRD 108

[Close]
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match: O13896 (DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc11 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.6e-15
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           M+FCPTCGN L   +   G+++ F C TCPY  +      +  +    +KE++ ++  ++
Sbjct: 1   MQFCPTCGNHLIVAVDEEGRNA-FDCRTCPY--HFPISTFLYSRHEFAQKEVDDVLGGEE 60

Query: 61  -MKNAAQTEATCPN--CAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 112
             ++  QTE TC N  C   +A F Q+Q+RSADEP +TFY+C    C+  WRE+
Sbjct: 61  AFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC--TKCKFQWREN 109

[Close]
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match: Q04307 (DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPC11 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.6e-15
Identity = 44/114 (38.60%), Postives = 65/114 (57.02%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           + FCP+C NML     + G  +   C +CPY   +E  ++I  ++ L +KE++ ++    
Sbjct: 2   LSFCPSCNNMLLITSGDSGVYT-LACRSCPYEFPIEG-IEIYDRKKLPRKEVDDVLG-GG 61

Query: 61  MKNAAQTEATCPN---CAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 112
             N  QT+  CPN   C    A F Q+Q+RSADEP TTFYKC+  NC   W+E+
Sbjct: 62  WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKCV--NCGHRWKEN 110

[Close]
BLAST of CsGy3G038340 vs. NCBI nr
Match: XP_004141147.1 (DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >XP_008465338.1 PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis melo] >KGN59770.1 hypothetical protein Csa_002120 [Cucumis sativus])

HSP 1 Score: 241 bits (614), Expect = 2.25e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. NCBI nr
Match: XP_038903069.1 (DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida])

HSP 1 Score: 239 bits (609), Expect = 1.31e-79
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCR NWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]
BLAST of CsGy3G038340 vs. NCBI nr
Match: XP_022932603.1 (DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022932604.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_022972319.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_022972320.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita maxima] >XP_023539106.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo] >XP_023539107.1 DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 236 bits (601), Expect = 2.17e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. NCBI nr
Match: KAG6597716.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236 bits (601), Expect = 7.40e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 38  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 97

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 98  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 148

[Close]
BLAST of CsGy3G038340 vs. NCBI nr
Match: KAG7029162.1 (DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (601), Expect = 9.04e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 44  MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 103

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 104 MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 154

[Close]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match: A0A1S3CQ50 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 1.09e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match: A0A0A0LCM4 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 1.09e-80
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED
Sbjct: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match: A0A6J1IB59 (DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 1.05e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match: A0A6J1EXG3 (DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC111439113 PE=3 SV=1)

HSP 1 Score: 236 bits (601), Expect = 1.05e-78
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MKNAAQTEATCPNC FGKAAFIQIQLRSADEPA+TFYKCMNE+CRQNWRED
Sbjct: 61  MKNAAQTEATCPNCGFGKAAFIQIQLRSADEPASTFYKCMNEDCRQNWRED 111

[Close]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match: A0A6J1DDT5 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111020128 PE=3 SV=1)

HSP 1 Score: 231 bits (588), Expect = 1.01e-76
Identity = 105/111 (94.59%), Postives = 108/111 (97.30%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYV +LENRVKIKRKQHL+KKELEPIISDDD
Sbjct: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVCHLENRVKIKRKQHLLKKELEPIISDDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111
           MK AAQTEATCPNCAFGKAAFIQ+QLRSADEPATTFYKCMNENCR NWRED
Sbjct: 61  MKTAAQTEATCPNCAFGKAAFIQLQLRSADEPATTFYKCMNENCRHNWRED 111

[Close]
BLAST of CsGy3G038340 vs. TAIR 10
Match: AT4G07950.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 139.4 bits (350), Expect = 1.7e-33
Identity = 63/111 (56.76%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGN+L++E    G SSRFFC TCPYV+ +E RV+IK+KQ LVKK +EP+++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGSSRFFCSTCPYVANIERRVEIKKKQLLVKKSIEPVVTKDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 112
           +  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]
BLAST of CsGy3G038340 vs. TAIR 10
Match: AT1G01210.1 (DNA-directed RNA polymerase, subunit M, archaeal )

HSP 1 Score: 136.0 bits (341), Expect = 1.9e-32
Identity = 60/111 (54.05%), Postives = 82/111 (73.87%), Query Frame = 0 

Query: 1   MEFCPTCGNMLQFELPNMGKSSRFFCPTCPYVSYLENRVKIKRKQHLVKKELEPIISDDD 60
           MEFCPTCGN+L++E    G +SRFFC TCPYV+Y++ +V+IK+KQ LVKK +E +++ DD
Sbjct: 1   MEFCPTCGNLLRYE---GGGNSRFFCSTCPYVAYIQRQVEIKKKQLLVKKSIEAVVTKDD 60

Query: 61  MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 112
           +  AA+TEA CP C   KA F  +Q+RSADEP + FY+C+   C   WRE+
Sbjct: 61  IPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFYRCL--KCEFTWREE 106

[Close]
BLAST of CsGy3G038340 vs. TAIR 10
Match: AT2G38560.1 (transcript elongation factor IIS )

HSP 1 Score: 41.6 bits (96), Expect = 4.9e-04
Identity = 18/46 (39.13%), Postives = 26/46 (56.52%), Query Frame = 0 

Query: 64  AAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWR 110
           A+  +  C  C   K  + Q+Q RSADEP TT+  C+  NC  +W+
Sbjct: 333 ASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCV--NCDNHWK 376

The following BLAST results are available for this feature:
BLAST of CsGy3G038340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9Y2Y18.4e-1741.28DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens OX=9606 GN=POLR3K ... [more]
Q9CQZ71.4e-1641.28DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus OX=10090 GN=Polr3k... [more]
Q2M2S71.2e-1540.74DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus OX=9913 GN=POLR3K PE... [more]
O138961.6e-1537.72DNA-directed RNA polymerase III subunit RPC10 OS=Schizosaccharomyces pombe (stra... [more]
Q043074.6e-1538.60DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces cerevisiae (strai... [more]
BLAST of CsGy3G038340 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004141147.12.25e-80100.00DNA-directed RNA polymerase III subunit RPC10 [Cucumis sativus] >XP_008465337.1 ... [more]
XP_038903069.11.31e-7999.10DNA-directed RNA polymerase III subunit RPC10-like [Benincasa hispida][more]
XP_022932603.12.17e-7897.30DNA-directed RNA polymerase III subunit RPC10-like [Cucurbita moschata] >XP_0229... [more]
KAG6597716.17.40e-7897.30DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
KAG7029162.19.04e-7897.30DNA-directed RNA polymerase III subunit RPC10, partial [Cucurbita argyrosperma s... [more]
BLAST of CsGy3G038340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3CQ501.09e-80100.00DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103502981 PE=3... [more]
A0A0A0LCM41.09e-80100.00DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G844880 P... [more]
A0A6J1IB591.05e-7897.30DNA-directed RNA polymerase subunit OS=Cucurbita maxima OX=3661 GN=LOC111470892 ... [more]
A0A6J1EXG31.05e-7897.30DNA-directed RNA polymerase subunit OS=Cucurbita moschata OX=3662 GN=LOC11143911... [more]
A0A6J1DDT51.01e-7694.59DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110201... [more]
BLAST of CsGy3G038340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G07950.11.7e-3356.76DNA-directed RNA polymerase, subunit M, archaeal [more]
AT1G01210.11.9e-3254.05DNA-directed RNA polymerase, subunit M, archaeal [more]
AT2G38560.14.9e-0439.13transcript elongation factor IIS [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..56
e-value: 7.0E-8
score: 42.2
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..110
e-value: 9.2E-14
score: 61.7
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 69..109
e-value: 4.4E-16
score: 58.4
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..108
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..109
score: 12.995169
NoneNo IPR availableGENE3D2.20.70.10coord: 1..34
e-value: 6.7E-7
score: 30.9
NoneNo IPR availableGENE3D2.20.25.10coord: 56..111
e-value: 2.4E-18
score: 67.3
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..110
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 50..111
IPR029401Nudix hydrolase, N-terminalPFAMPF14803Nudix_N_2coord: 3..34
e-value: 1.3E-7
score: 31.4
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..111
e-value: 9.8E-27
score: 91.7
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..110
IPR019761DNA-directed RNA polymerase M, 15kDa subunit, conserved sitePROSITEPS01030RNA_POL_M_15KDcoord: 3..29
IPR034014Pol III subunit C11, C-terminal zinc ribbonCDDcd10509Zn-ribbon_RPC11coord: 63..110
e-value: 8.61165E-22
score: 78.7814

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G038340.2CsGy3G038340.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006386 termination of RNA polymerase III transcription
biological_process GO:0042779 tRNA 3'-trailer cleavage
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005730 nucleolus
cellular_component GO:0005666 RNA polymerase III complex
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding