CsGy3G035580 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G035580
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 34064733 .. 34065104 (-)
RNA-Seq ExpressionCsGy3G035580
SyntenyCsGy3G035580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCTCTTCTCCTCCTCCTCTCCCAACTCCTCCGTCACCACGACACCAATCCCGACTACTCCCTCACTCTCCCTTCTCCACCAACGACCATGCCCTCTTCTTCTTCTTCTTCTTCTGCCCATGGGAACTCGGTGTTGCCCAGATCCGACTGCTGTTACGCCAATAATTACAAGACCCGGATCTGTGCCGATGAGAATGTAATGGATGAGTTTCTCAAGGAATCTAGGGTTTGTGTTGATTTGATTTGGCCCTAATTTCAATTTCAATTTTTAATTGTTAGTGGAATTCGGTTTATGATCTTTTCTTGTTTTTTGTTTGTGTTGTAATGCTCGAAGATTTCGAGTTTAAGAGAGAGGAACAAAATTTGA

mRNA sequence

ATGGCTTCTCTTCTCCTCCTCCTCTCCCAACTCCTCCGTCACCACGACACCAATCCCGACTACTCCCTCACTCTCCCTTCTCCACCAACGACCATGCCCTCTTCTTCTTCTTCTTCTTCTGCCCATGGGAACTCGGTGTTGCCCAGATCCGACTGCTGTTACGCCAATAATTACAAGACCCGGATCTGTGCCGATGAGAATGTAATGGATGAGTTTCTCAAGGAATCTAGGATTTCGAGTTTAAGAGAGAGGAACAAAATTTGA

Coding sequence (CDS)

ATGGCTTCTCTTCTCCTCCTCCTCTCCCAACTCCTCCGTCACCACGACACCAATCCCGACTACTCCCTCACTCTCCCTTCTCCACCAACGACCATGCCCTCTTCTTCTTCTTCTTCTTCTGCCCATGGGAACTCGGTGTTGCCCAGATCCGACTGCTGTTACGCCAATAATTACAAGACCCGGATCTGTGCCGATGAGAATGTAATGGATGAGTTTCTCAAGGAATCTAGGATTTCGAGTTTAAGAGAGAGGAACAAAATTTGA

Protein sequence

MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKTRICADENVMDEFLKESRISSLRERNKI*
Homology
BLAST of CsGy3G035580 vs. NCBI nr
Match: KAE8651190.1 (hypothetical protein Csa_001669 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 6.62e-53
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60
          MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICADENVMDEFLKESRISSLRERNKI 87
          RICADENVMDEFLKESRISSLRERNKI
Sbjct: 61 RICADENVMDEFLKESRISSLRERNKI 87

BLAST of CsGy3G035580 vs. NCBI nr
Match: XP_038904495.1 (uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida])

HSP 1 Score: 87.8 bits (216), Expect = 4.19e-19
Identity = 52/77 (67.53%), Postives = 62/77 (80.52%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60
          MASL+LLLS+LLRHH+TNPDY LT+P PP   P  +SSS A G S+LP S+ CY+N  K+
Sbjct: 1  MASLVLLLSELLRHHNTNPDYWLTIPLPPPPSPPRTSSSVA-GKSLLP-SERCYSN--KS 60

Query: 61 RICADENVMDEFLKESR 77
          RICADE V+DEFLKESR
Sbjct: 61 RICADETVIDEFLKESR 73

BLAST of CsGy3G035580 vs. NCBI nr
Match: PON93800.1 (hypothetical protein TorRG33x02_105030 [Trema orientale])

HSP 1 Score: 50.8 bits (120), Expect = 6.97e-06
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNY-- 60
          MASLLLLLS+L+ HH+ +PD+ + L SPP++  SSSSSSS+  +S         + +   
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 KTRICADENVMDEF-LKESRI 78
          +T+ C D NV DE  LKESR+
Sbjct: 61 ETKKCYD-NVSDENDLKESRV 80

BLAST of CsGy3G035580 vs. NCBI nr
Match: KAG6580906.1 (hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 48.9 bits (115), Expect = 4.40e-05
Identity = 27/39 (69.23%), Postives = 31/39 (79.49%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSS 39
          MASL+LLLS+L+RHH+TNPDY LTLP P  T P  SS S
Sbjct: 1  MASLVLLLSELVRHHNTNPDYWLTLPLPSPTPPPPSSDS 39

BLAST of CsGy3G035580 vs. NCBI nr
Match: PON39745.1 (hypothetical protein PanWU01x14_302520 [Parasponia andersonii])

HSP 1 Score: 48.5 bits (114), Expect = 4.99e-05
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSS-----AHGNSVLPRSDCCYA 60
          MASLLLLLS+L+ HH+ +PD+ + L SP ++  SSSSSSS     A  +S  PR +    
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKE---- 60

Query: 61 NNYKTRICADENVMDEFLKESRI 78
              T+ C D    +  LKESR+
Sbjct: 61 ----TKKCHDNVSHENDLKESRV 75

BLAST of CsGy3G035580 vs. ExPASy TrEMBL
Match: A0A0A0LHI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 153 bits (386), Expect = 1.10e-46
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60
          MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICADENVMDEFLKESRI 78
          RICADENVMDEFLKESR+
Sbjct: 61 RICADENVMDEFLKESRV 78

BLAST of CsGy3G035580 vs. ExPASy TrEMBL
Match: A0A2P5F7L7 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 3.37e-06
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNY-- 60
          MASLLLLLS+L+ HH+ +PD+ + L SPP++  SSSSSSS+  +S         + +   
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPPSSSSSSSSSSSSSSSSCAAAFAASSSTSVSK 60

Query: 61 KTRICADENVMDEF-LKESRI 78
          +T+ C D NV DE  LKESR+
Sbjct: 61 ETKKCYD-NVSDENDLKESRV 80

BLAST of CsGy3G035580 vs. ExPASy TrEMBL
Match: A0A2P5AT80 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.42e-05
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 0

Query: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSS-----AHGNSVLPRSDCCYA 60
          MASLLLLLS+L+ HH+ +PD+ + L SP ++  SSSSSSS     A  +S  PR +    
Sbjct: 1  MASLLLLLSELVSHHNEDPDFWVKLSSPSSSSSSSSSSSSCAAAFAASSSTSPRKE---- 60

Query: 61 NNYKTRICADENVMDEFLKESRI 78
              T+ C D    +  LKESR+
Sbjct: 61 ----TKKCHDNVSHENDLKESRV 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8651190.16.62e-53100.00hypothetical protein Csa_001669 [Cucumis sativus][more]
XP_038904495.14.19e-1967.53uncharacterized WD repeat-containing protein C2A9.03-like [Benincasa hispida][more]
PON93800.16.97e-0646.91hypothetical protein TorRG33x02_105030 [Trema orientale][more]
KAG6580906.14.40e-0569.23hypothetical protein SDJN03_20908, partial [Cucurbita argyrosperma subsp. sorori... [more]
PON39745.14.99e-0543.37hypothetical protein PanWU01x14_302520 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
A0A0A0LHI41.10e-4698.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822280 PE=4 SV=1[more]
A0A2P5F7L73.37e-0646.91Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_105030 PE=4 SV... [more]
A0A2P5AT802.42e-0543.37Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_302520 PE... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G035580.2CsGy3G035580.2mRNA