CsGy3G033590 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G033590
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionserine/arginine-rich SC35-like splicing factor SCL33
LocationGy14Chr3: 32575703 .. 32579611 (+)
RNA-Seq ExpressionCsGy3G033590
SyntenyCsGy3G033590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTCGAACATAAAAAGGACGTTCGTGGTAGAGAAAGGTGAAACCAAAGGAACATCCAACAATTTTGATCTTCCAGTTTGAACGAAGCGGCTCCCTTCGCTTTATCGGTTCTCCTATTCTCAGGTTCTTGCCTTATTCTTTACTTTTTCAATATCTCAATATTTTCTCTAATGGAGATTACATTTGTACGAGTTTTGATTCAATAACTGCTGATGATATAGTATATGCATGAGAACTTTTCCTTCTTTTTTTTTATGCCGAATTCTGTTTGATATCCATTTGTTCACGTTCGAAGATCGTTAGATGTGAATGAAGCTGCAACTATGTCCGGTTTTTTTTTTCTAGTCATCGTGTTTGTTTCGCTGTGTATGGAAATATTTTGATTTGGTCGAAATCGATCTCTTTAGCTCTGAGGAAATATTGGAGCTGTTGATCGAAGGAAATGCTTGTATTGCTTTCGATAAAATTTATTAGGCTGTTTTTGGTTGATTGTGTGTGTATGTTTTTTTTTTTAAAAGTAGCTGATATCGTGTTTGTTTTCTAAATAAATAATAGTCTGTTACTGATTCTTTCGTTAATCTGTGGTATGGTGGTAGCTTGCTGATTGATGTGTTAGTGTCTGCAAATTTAGGCTTATCTGTATCATAATGTTCAGCACATCTGTAGTTAAAATCTTGATTTGTTTTCATTTTCTTGGTGTCGTTAAGGAAATCGAAAATGAGAGGTAGAAGCTACAGTTACAGTCCATCACCACCAAGAAGTTATGGCAGGAGATATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGTTTGTGACTTCATTTTATATTTCGTGGCTATTTCATTTGCCGGGTCTTTTATACATGAAATTGTGTTGGTTCTTCGTTTTTCCTCACATATATCACATGCATGCTATGGAAAATGCTAAGAAACGCTTTATTTTGTTGAGAATACAAAGGGAAAAAGGAGATTGTGTTTGGTTTTGTTCTCTATTGAGTTGATAAACTTTTTTATTCATATGTATTTTGCAGGCCAGAGGACCTACGAGGATTATTTGGGCGGTTTGGTCCCCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGGTAGGGTACATTGGAAGATTGTTATATTGATTTTGTATGCATTTGGTTTGTATACGTGTATGGATGTTTTTCCTGCATGTTTTAACTCATTTTAGTTCTTTAGTTTTGGACGTATCTGATCTGCTACATATTTGTAAATATGTCTTTATTGATGGTTGGTCCTAGTGATTGCTTAATGGTGTGGAAATGGTCCTCTGTTTTCAATTATTTGGTTTTCCAATAATAACATACAATCTGTTTATGGAGTTTGGTTGTTTTTATTGAAAGTAATAGTGTTGAAGACAACCAATGAAGTAATAAGAGTATCTTGTGGAAGACAAAAAGCAAGTAATTTGTTTTTTGTGTTGAAGACATTCAAGTAAGTTCTGATGACTTAAATGTGTACATGAAGATTCGGTGGAAGTTGGGTTAGAGTACATTGAGAAGAAGTTCAAGTCTTGAAGAATTACATCTCAATTTTTTCTTAGCCACTCAGAAGGTTAGCATGGTGATGTTAATATTCTCTTGTTAGAGCTCTCTGTCGATGTTTCTATCACTCCCAATCGATGGATTAATGATCAATGATGCCACTGGTTTAAGTGACATTTTCTGATTTTTTCTGAATCAGCGAACATCCTTGTTTAAAATTGCATTATGAACAGTAAAATGATTGTGACTGCAGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCATGAACTAACTGTTGTGTTTGCTGAGGAAAACAGGAAGAGACCTGAAGAGATGAGAGCACGGGACTCATCAAGGTTGCTATCTCTTTCCTTAACCTGTTTTTTAATAACCAATTTCTATTGCAAAGCTAGGATGCGTGGTGATGAAAATAAATCTCAACTTTTAGAAATTCTCTAGAAGCATTCTCAAACTTCTCCTATATCTGTAAAGTTTCTTTAGAGACTGAGGTACAACCAGAGCATTGGTCCAGACAGTTTTCTTGTCTTTGAAATTTTGACCAAAGAGATGCATCTTTGATGGCAAATCGTGGATGTTACAAAGGCCTAAGGGTGTACTAGTGCTAATATATTGGAAGGATAAAAAAACCTGCCTCTTTAGAATAAATGCATGGAAGAGATGTTACTGCTCTTCACTCGTGGAACGATAGATGGGGATCAAGGATATGTCTAGATTTTCTTTTGTTTGCAATTGAGTGTTGAACTTACCATGAAGTACAGTCCAAATAAAAGGTAGGAATCTTAAGTTTCCATCTCTTATAAGAAAATTCCAGACCGAAGTTGATTCCATTAACAGAGAGTTGAAGTACTTGAGTAAATTGACTGTAGCCACTCGACACCTATTGCCCATCGACCATCATTGTGTTTTCAGTCAACGGATAGTAAGTTATATGTTTGATTCAAAATTGCCTCTGGCTTTGTATTCTATCCTTGACCTGCTCTTCCTACAATCTTTCGAGAAGTCCTTTATTAATTGTAAATATATATACTCATTATTTTTTTTCATGTGTGAAATTGTTAACAGGGGTCGGTCCTACAGTTACAGCCACCGGCATTCACCATTGCGATATTCACAATCACCACACTATGATCGAAAATATTCACGTTGTCCAGAGTATTATTCCCCTGCACGGTCCAGACGATATTCAAGGTGAGTGGTTATATTATTATTTGTATACTTCTCTCATTTATGATTATTTACTCCATTAAGGAAAGTGGGAGGCAGAGGGGTGGTTTGTACCAATTTCTAATCTTTCATTTATGTGATATAGGTCGCCTAGGGGTCCGAGGTACAGGGAGCAATCGTACTCAAGGTCACCATCTGATCCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGTGAGTAAAAATAGTTTTATTCAAGTTTTAAGAAAAGCCAGCGAGCCAGCTGATCTTTCTGAAGACAGACCCAGAAACTATGATTTAAATTATGCTTGGAATTTGGATTTCAGAGGCTTTGTATATGTGTTGTGTTTTAGAAAATGCTTTTGTTTAAGAGATAAAACTGATTTTTATGCTCTTATTGAACAAATTAATGAGCTTTTATGGCTGTTTTCTCCATGTAAAATGAAACTTTGGATTTTTAGACTTTTCTTTTCTAAAACACGCCCTAACATCTCTATCGAAATCATGTCTTAATGTTTGTCTGCTAGTGAGTGAGGTTATCAGAGATTAACTTTGAGACTGTATGCTTAAAAACTATAGTAGATTGATTTTCTAACAATTGCCATTTTCAATTATACCAAAGCAAATTCTATTTAGTTCCCTATAGCTTTTTTTTTTTCCTATCAGTAAGAATTTCTCTTATTTACATTATTTTTTATTTTGATCGTAATTAATTGAGATCATGAATTAAATTCTGTAGGGCTATCTTCGCATTAGACCATTGACTTATGCATTATACAATTCCAAGCTGATGAGTTGTACAAATGTTTCACGATCACTTCTCTTAGTTTTGTAACCAAATATAATGTTGCATATACTGTTGAATTTTCATCCATTTCCATAAATTCAAAAATGGATTTGTAAGAGAAACATTGTAATTTCATTGTAAATATTTGACAAAAATTCTTACTTAGACATCAATTAAAGTCTAAAACACTGAAATTTTTGTTGGTTGAATTGGCCATCCAATAGACCCAAATAAAGTTTTCTAACTCATTCTTATAGG

mRNA sequence

TCTCGAACATAAAAAGGACGTTCGTGGTAGAGAAAGGTGAAACCAAAGGAACATCCAACAATTTTGATCTTCCAGTTTGAACGAAGCGGCTCCCTTCGCTTTATCGGTTCTCCTATTCTCAGGAAATCGAAAATGAGAGGTAGAAGCTACAGTTACAGTCCATCACCACCAAGAAGTTATGGCAGGAGATATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGCCAGAGGACCTACGAGGATTATTTGGGCGGTTTGGTCCCCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCATGAACTAACTGTTGTGTTTGCTGAGGAAAACAGGAAGAGACCTGAAGAGATGAGAGCACGGGACTCATCAAGGGGTCGGTCCTACAGTTACAGCCACCGGCATTCACCATTGCGATATTCACAATCACCACACTATGATCGAAAATATTCACGTTGTCCAGAGTATTATTCCCCTGCACGGTCCAGACGATATTCAAGGTCGCCTAGGGGTCCGAGGTACAGGGAGCAATCGTACTCAAGGTCACCATCTGATCCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGGCTATCTTCGCATTAGACCATTGACTTATGCATTATACAATTCCAAGCTGATGAGTTGTACAAATGTTTCACGATCACTTCTCTTAGTTTTGTAACCAAATATAATGTTGCATATACTGTTGAATTTTCATCCATTTCCATAAATTCAAAAATGGATTTGTAAGAGAAACATTGTAATTTCATTGTAAATATTTGACAAAAATTCTTACTTAGACATCAATTAAAGTCTAAAACACTGAAATTTTTGTTGGTTGAATTGGCCATCCAATAGACCCAAATAAAGTTTTCTAACTCATTCTTATAGG

Coding sequence (CDS)

ATGAGAGGTAGAAGCTACAGTTACAGTCCATCACCACCAAGAAGTTATGGCAGGAGATATCGTAGCCCTAGTCCAAGGGGTCGTGGAGGTCGTAGAAGGGACCTGCCAACAAGTCTTTTGGTTAGGAACTTGAGGCACGACTGCAGGCCAGAGGACCTACGAGGATTATTTGGGCGGTTTGGTCCCCTTAAGGACATTTACTTGCCACGAGATTATTATTCTGGAGAACCGCGTGGTTTTGGATTTGTTCAGTTCGTTGATGCTGCTGATGCTGCTGATGCCAAGTATGAATTGGATGGCCAAGTTCTCCTGGGTCATGAACTAACTGTTGTGTTTGCTGAGGAAAACAGGAAGAGACCTGAAGAGATGAGAGCACGGGACTCATCAAGGGGTCGGTCCTACAGTTACAGCCACCGGCATTCACCATTGCGATATTCACAATCACCACACTATGATCGAAAATATTCACGTTGTCCAGAGTATTATTCCCCTGCACGGTCCAGACGATATTCAAGGTCGCCTAGGGGTCCGAGGTACAGGGAGCAATCGTACTCAAGGTCACCATCTGATCCAAGGGGCCGCAGTTACAGCCGAAGCAGGAGCCGTAGCTATAGCCGAAGTTATTCTAGGGCTATCTTCGCATTAGACCATTGA

Protein sequence

MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYREQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH*
Homology
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BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 8.6e-58
Identity = 142/224 (63.39%), Postives = 162/224 (72.32%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQS----PHYDRKYSRCPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YS+S    P   R  SR  +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGPRY-REQSYSRSPSD--PRGRSYS--RSRSRSYSRSYSRAI 213
           PR  RY   +SYSRSP+    RGRS +  R +SRS S S  R+I
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSI 221

[Close]
BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.6e-56
Identity = 136/222 (61.26%), Postives = 159/222 (71.62%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+D ADAA+AK+++DG +LLG ELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARDSSRGRSYSYSHRHSPLRYSQSP---HYDRKYSRCPEYYSPARSRRYSR--S 180
           +P EMR RD     +     R SP RYS+SP      R  SR   Y SP   R  SR  S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRGPRY-REQSYSRSP--SDPRGRSYSRSRSRSYSRSYSRAI 213
           P+  RY +E+SYSRSP  +  R RS S  R +S+SRS  R++
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSV 220

[Close]
BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 106/233 (45.49%), Postives = 127/233 (54.51%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+FVDA DA +A+  ++ +   G E+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRY 180
           V A E+RKRPEEMR +  +R R  S S              DR + R     S +RS   
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPSGSR-------------DRSHGR-----SRSRSISR 180

Query: 181 SRSPRGP-----RYREQSYSRSP----SDPRGRSYSRSRSRSYSRSYSRAIFA 215
           SRSPR P     RYR +SYS +P      PRG        RSYS  Y  A  A
Sbjct: 181 SRSPRRPSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAA 215

[Close]
BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 112/239 (46.86%), Postives = 135/239 (56.49%), Query Frame = 0 

Query: 2   RGRSYSYSPSPPRSYGRRYRSPSPRGRGG----RRRDLPTS----------LLVRNLRHD 61
           R RS SYSP P      R RSP PR R G    R R+ P+S          LL+RNL  D
Sbjct: 5   RSRSRSYSPRP------RDRSP-PRERKGYDDNRLRERPSSRDHESSGPSGLLIRNLPLD 64

Query: 62  CRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHE 121
            RP DLR  F RFGPLKDIYLPR+YY+GEPRGFGFV++  A DAA+A   ++ +V+ G E
Sbjct: 65  ARPNDLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGRE 124

Query: 122 LTVVFAEENRKRPEEMRARDSSRGRSYSY---SHRHSPLRY------SQSPHYDRKYSRC 181
           + +VFAEENRK P+EMR  + + GR   Y   SHR    RY         P  + ++S+ 
Sbjct: 125 IAIVFAEENRKTPQEMRTTNGTSGRHGDYKRTSHRSPRRRYRSHSRSRSPPRRESRHSKV 184

Query: 182 PE--YYSP-ARSRRYSRS--PRGPRYREQSYSRSPSDP------RGRSYSRSRSRSYSR 207
            E   YSP  RSR  SRS  PR  R  +    RSP +       R R  SRSRSRS SR
Sbjct: 185 REDDLYSPRRRSRSISRSPLPRNEREYKSRNCRSPREERVLTPIRSRCLSRSRSRSLSR 236

[Close]
BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 6.2e-24
Identity = 73/190 (38.42%), Postives = 108/190 (56.84%), Query Frame = 0 

Query: 37  TSLLVRNLRHDCRPEDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKY 96
           TSL VRN+  D R EDLR  FGR+GP+ D+Y+P D+Y+  PRGF +VQF D  DA DA +
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 97  ELDGQVLLGHELTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYS 156
            LD + + G ++ + FA+ +RK P +M+A++     S S    +   R S+S  Y+R+ S
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSSRYDDYDRYRRSRSRSYERRRS 129

Query: 157 RCPEY-------YSPARSRRYSRSPRGP--------RYREQSYSRSPSDPRGRSYSRSRS 212
           R   +       YSP  SR   R  R          ++R +S+SRS S+ R RS S+ + 
Sbjct: 130 RSRSFDYNYRRSYSPRNSRPTGRPRRSRSHSDNDRFKHRNRSFSRSKSNSRSRSKSQPKK 189

[Close]
BLAST of CsGy3G033590 vs. NCBI nr
Match: XP_011652066.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus] >KAE8645777.1 hypothetical protein Csa_017367 [Cucumis sativus])

HSP 1 Score: 429 bits (1103), Expect = 1.82e-151
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180
           EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 217
           EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 217

[Close]
BLAST of CsGy3G033590 vs. NCBI nr
Match: XP_031739396.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus])

HSP 1 Score: 424 bits (1091), Expect = 1.27e-149
Identity = 217/218 (99.54%), Postives = 217/218 (99.54%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFV-DAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           GPLKDIYLPRDYYSGEPRGFGFVQFV DAADAADAKYELDGQVLLGHELTVVFAEENRKR
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180
           PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY
Sbjct: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180

Query: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 217
           REQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH
Sbjct: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 218

[Close]
BLAST of CsGy3G033590 vs. NCBI nr
Match: XP_011652068.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus])

HSP 1 Score: 414 bits (1064), Expect = 1.25e-145
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180
           EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210
           EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of CsGy3G033590 vs. NCBI nr
Match: XP_031739397.1 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus])

HSP 1 Score: 409 bits (1052), Expect = 8.74e-144
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFV-DAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           GPLKDIYLPRDYYSGEPRGFGFVQFV DAADAADAKYELDGQVLLGHELTVVFAEENRKR
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180
           PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY
Sbjct: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180

Query: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210
           REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR
Sbjct: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 211

[Close]
BLAST of CsGy3G033590 vs. NCBI nr
Match: KAE8651124.1 (hypothetical protein Csa_000954 [Cucumis sativus])

HSP 1 Score: 409 bits (1052), Expect = 1.01e-143
Identity = 210/211 (99.53%), Postives = 210/211 (99.53%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 5   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFV-DAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           GPLKDIYLPRDYYSGEPRGFGFVQFV DAADAADAKYELDGQVLLGHELTVVFAEENRKR
Sbjct: 65  GPLKDIYLPRDYYSGEPRGFGFVQFVVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 124

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 180
           PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY
Sbjct: 125 PEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRY 184

Query: 181 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210
           REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR
Sbjct: 185 REQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 215

[Close]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match: A0A0A0LGW4 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV=1)

HSP 1 Score: 429 bits (1103), Expect = 8.80e-152
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180
           EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR
Sbjct: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180

Query: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 217
           EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH
Sbjct: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSRAIFALDH 217

[Close]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match: A0A1S3B7U0 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=LOC103486733 PE=4 SV=1)

HSP 1 Score: 397 bits (1021), Expect = 2.17e-139
Identity = 204/210 (97.14%), Postives = 205/210 (97.62%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRRYRSPSPR RGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRSRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRSPRGPRYR 180
           EEMRARDSSRGRSYSYS RHSPLRYS+SPHYDRKYSR PEYYSPARSRRYSRSPRG RYR
Sbjct: 121 EEMRARDSSRGRSYSYSRRHSPLRYSRSPHYDRKYSRSPEYYSPARSRRYSRSPRGRRYR 180

Query: 181 EQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210
           EQSYSRSP DPRGRSYSRSRSRSYSRSYSR
Sbjct: 181 EQSYSRSPYDPRGRSYSRSRSRSYSRSYSR 210

[Close]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match: A0A6J1DCY5 (serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3673 GN=LOC111019338 PE=4 SV=1)

HSP 1 Score: 355 bits (910), Expect = 1.79e-122
Identity = 189/212 (89.15%), Postives = 194/212 (91.51%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR+RSPSPR RGGR RDLPTSLLVRNLRHDCRPEDLRGLFGRF
Sbjct: 1   MRGRSYSYSPSPPRSYGRRHRSPSPRDRGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSGEPRGFGFVQFVD ADA DAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDPADATDAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRS--PRGPR 180
           EEMRARDSSRGRSY+Y  R SPLRYS+SPHYDRKYSR PEYYSPA+S RYSRS  PR  R
Sbjct: 121 EEMRARDSSRGRSYNY--RRSPLRYSRSPHYDRKYSRSPEYYSPAQSGRYSRSISPRDRR 180

Query: 181 YREQSYSRSPSDPRGRSYSRSRSRSYSRSYSR 210
           YRE+SY RSP D RGRSYSRSRSRSYSRSY R
Sbjct: 181 YRERSYLRSPYDSRGRSYSRSRSRSYSRSYCR 210

[Close]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match: A0A6J1KYI3 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 3.47e-114
Identity = 180/213 (84.51%), Postives = 191/213 (89.67%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPRG GGR RDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 1   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 60

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 61  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 120

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRS--PRGPR 180
           E+MRARDSSRGRSYSY  R SPL+YSQSP + RKYSR PEYYSPARSRRYSRS  PR   
Sbjct: 121 EQMRARDSSRGRSYSY--RRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQM 180

Query: 181 YREQSYSRSPSDPRGRSYSRSRSRSYSRSYSRA 211
           +RE+SYSRSP + R R YSRSRSRS SRSYSR+
Sbjct: 181 HRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRS 211

[Close]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match: A0A6J1L0E4 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498719 PE=4 SV=1)

HSP 1 Score: 334 bits (856), Expect = 3.99e-114
Identity = 180/213 (84.51%), Postives = 191/213 (89.67%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGRGGRRRDLPTSLLVRNLRHDCRPEDLRGLFGRF 60
           MRGRSYSYSPSPPRSYGRR RS SPRG GGR RDLPTSLLVRNLRHDCRPEDLRGLFG+F
Sbjct: 5   MRGRSYSYSPSPPRSYGRRNRSLSPRGHGGRGRDLPTSLLVRNLRHDCRPEDLRGLFGQF 64

Query: 61  GPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKRP 120
           GPLKDIYLPRDYYSG+PRGFGFVQ++D ADAADAKYELDGQVLLG ELTVVFAEENRKRP
Sbjct: 65  GPLKDIYLPRDYYSGKPRGFGFVQYIDPADAADAKYELDGQVLLGRELTVVFAEENRKRP 124

Query: 121 EEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRYSRS--PRGPR 180
           E+MRARDSSRGRSYSY  R SPL+YSQSP + RKYSR PEYYSPARSRRYSRS  PR   
Sbjct: 125 EQMRARDSSRGRSYSY--RRSPLQYSQSPPHGRKYSRSPEYYSPARSRRYSRSISPRDQM 184

Query: 181 YREQSYSRSPSDPRGRSYSRSRSRSYSRSYSRA 211
           +RE+SYSRSP + R R YSRSRSRS SRSYSR+
Sbjct: 185 HRERSYSRSPYNSRDRGYSRSRSRSRSRSYSRS 215

[Close]
BLAST of CsGy3G033590 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 224.9 bits (572), Expect = 6.1e-59
Identity = 142/224 (63.39%), Postives = 162/224 (72.32%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQS----PHYDRKYSRCPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YS+S    P   R  SR  +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGPRY-REQSYSRSPSD--PRGRSYS--RSRSRSYSRSYSRAI 213
           PR  RY   +SYSRSP+    RGRS +  R +SRS S S  R+I
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSI 221

[Close]
BLAST of CsGy3G033590 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 222.6 bits (566), Expect = 3.0e-58
Identity = 137/217 (63.13%), Postives = 155/217 (71.43%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRKR 120
           FGP+KDIYLPRDYY+G+PRGFGFVQF+D ADAADAK+ +DG +LLG ELTVVFAEENRK+
Sbjct: 61  FGPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKK 120

Query: 121 PEEMRARDSSRGRSYSYSHRHSPLRYSQS----PHYDRKYSRCPEYYSPARSRRYSR--S 180
           P EMRAR+   GR +    R  P  YS+S    P   R  SR  +YYSP   R + R  S
Sbjct: 121 PTEMRARERGGGR-FRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYSPPPRRHHPRSIS 180

Query: 181 PRGPRY-REQSYSRSPSDPRGRSYSRSRSRSYSRSYS 210
           PR  RY   +SYSRSP+    R  S +  R  SRS S
Sbjct: 181 PREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLS 214

[Close]
BLAST of CsGy3G033590 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 219.5 bits (558), Expect = 2.6e-57
Identity = 136/222 (61.26%), Postives = 159/222 (71.62%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR--GGRRRDLPTSLLVRNLRHDCRPEDLRGLFG 60
           MRGR  SY+PSPPR YGRR RSPSPRGR  G R  DLPTSLLVRNLRHDCR EDLR  F 
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFE 60

Query: 61  RFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTVVFAEENRK 120
           +FGP+KDIYLPRDYY+G+PRGFGF+QF+D ADAA+AK+++DG +LLG ELTVVFAEENRK
Sbjct: 61  QFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRK 120

Query: 121 RPEEMRARDSSRGRSYSYSHRHSPLRYSQSP---HYDRKYSRCPEYYSPARSRRYSR--S 180
           +P EMR RD     +     R SP RYS+SP      R  SR   Y SP   R  SR  S
Sbjct: 121 KPTEMRTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRRSRSRSRGYNSPPAKRHQSRSVS 180

Query: 181 PRGPRY-REQSYSRSP--SDPRGRSYSRSRSRSYSRSYSRAI 213
           P+  RY +E+SYSRSP  +  R RS S  R +S+SRS  R++
Sbjct: 181 PQDRRYEKERSYSRSPPHNGSRVRSGSPGRVKSHSRSPRRSV 220

[Close]
BLAST of CsGy3G033590 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 218.0 bits (554), Expect = 7.4e-57
Identity = 141/236 (59.75%), Postives = 161/236 (68.22%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSPRGR-GGRRRDLPTSLLVRNLRHDCRPEDLRGLFGR 60
           MRGR  SY+PSPPR YGRR RSPSPRGR GGR RDLPTSLLVRNLRHDCR EDLR  F +
Sbjct: 1   MRGR--SYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQ 60

Query: 61  FGPLKDIYLPRDYYSG------------EPRGFGFVQFVDAADAADAKYELDGQVLLGHE 120
           FGP+KDIYLPRDYY+G            +PRGFGFVQF+D ADAADAK+ +DG +LLG E
Sbjct: 61  FGPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGRE 120

Query: 121 LTVVFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQS----PHYDRKYSRCPEYYS 180
           LTVVFAEENRK+P EMRAR+   G  +    R  P  YS+S    P   R  SR  +YYS
Sbjct: 121 LTVVFAEENRKKPTEMRARERGGGSRFRDRRRTPPRYYSRSRSPPPRRGRSRSRSGDYYS 180

Query: 181 PARSRRYSR--SPRGPRY-REQSYSRSPSD--PRGRSYS--RSRSRSYSRSYSRAI 213
           P   R + R  SPR  RY   +SYSRSP+    RGRS +  R +SRS S S  R+I
Sbjct: 181 PPPRRHHPRSISPREERYDGRRSYSRSPASDGSRGRSLTPVRGKSRSLSPSPRRSI 234

[Close]
BLAST of CsGy3G033590 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 148.3 bits (373), Expect = 7.2e-36
Identity = 106/233 (45.49%), Postives = 127/233 (54.51%), Query Frame = 0 

Query: 1   MRGRSYSYSPSPPRSYGRRYRSPSP----------RGRGGRRRDLPTSLLVRNLRHDCRP 60
           MR  S  Y   P R YG R RSP P           G GGRR     SLLVRN+  DCRP
Sbjct: 1   MRRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRP 60

Query: 61  EDLRGLFGRFGPLKDIYLPRDYYSGEPRGFGFVQFVDAADAADAKYELDGQVLLGHELTV 120
           E+LR  F RFGP++D+Y+PRDYYSG+PRGF FV+FVDA DA +A+  ++ +   G E+TV
Sbjct: 61  EELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITV 120

Query: 121 VFAEENRKRPEEMRARDSSRGRSYSYSHRHSPLRYSQSPHYDRKYSRCPEYYSPARSRRY 180
           V A E+RKRPEEMR +  +R R  S S              DR + R     S +RS   
Sbjct: 121 VVASESRKRPEEMRVKTRTRSREPSGSR-------------DRSHGR-----SRSRSISR 180

Query: 181 SRSPRGP-----RYREQSYSRSP----SDPRGRSYSRSRSRSYSRSYSRAIFA 215
           SRSPR P     RYR +SYS +P      PRG        RSYS  Y  A  A
Sbjct: 181 SRSPRRPSDSRSRYRSRSYSPAPRRRGGPPRGEEDENYSRRSYSPGYEGAAAA 215

The following BLAST results are available for this feature:
BLAST of CsGy3G033590 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SEU48.6e-5863.39Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=... [more]
Q9LHP23.6e-5661.26Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX... [more]
Q8L3X81.0e-3445.49Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=... [more]
Q1PDV21.1e-3146.86Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=... [more]
O754946.2e-2438.42Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S... [more]
BLAST of CsGy3G033590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652066.11.82e-151100.00serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus... [more]
XP_031739396.11.27e-14999.54serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 [Cucumis sativus... [more]
XP_011652068.11.25e-145100.00serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus... [more]
XP_031739397.18.74e-14499.53serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 [Cucumis sativus... [more]
KAE8651124.11.01e-14399.53hypothetical protein Csa_000954 [Cucumis sativus][more]
BLAST of CsGy3G033590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LGW48.80e-152100.00RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G792060 PE=4 SV... [more]
A0A1S3B7U02.17e-13997.14serine/arginine-rich SC35-like splicing factor SCL33 OS=Cucumis melo OX=3656 GN=... [more]
A0A6J1DCY51.79e-12289.15serine/arginine-rich SC35-like splicing factor SCL33 OS=Momordica charantia OX=3... [more]
A0A6J1KYI33.47e-11484.51serine/arginine-rich SC35-like splicing factor SCL33 isoform X3 OS=Cucurbita max... [more]
A0A6J1L0E43.99e-11484.51serine/arginine-rich SC35-like splicing factor SCL33 isoform X2 OS=Cucurbita max... [more]
BLAST of CsGy3G033590 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G55310.16.1e-5963.39SC35-like splicing factor 33 [more]
AT1G55310.23.0e-5863.13SC35-like splicing factor 33 [more]
AT3G13570.12.6e-5761.26SC35-like splicing factor 30A [more]
AT1G55310.37.4e-5759.75SC35-like splicing factor 33 [more]
AT3G55460.17.2e-3645.49SC35-like splicing factor 30 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 38..111
e-value: 8.2E-22
score: 88.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 39..108
e-value: 6.4E-19
score: 67.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 37..115
score: 17.284681
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 25..142
e-value: 1.3E-25
score: 92.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..159
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 178..203
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..134
NoneNo IPR availablePANTHERPTHR23147SERINE/ARGININE RICH SPLICING FACTORcoord: 1..208
NoneNo IPR availablePANTHERPTHR23147:SF155SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30Acoord: 1..208
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 37..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G033590.2CsGy3G033590.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0016607 nuclear speck
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding