CsGy3G033240 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G033240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr3: 32275633 .. 32276394 (+)
RNA-Seq Expression	CsGy3G033240
Synteny	CsGy3G033240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGATGTATTATTCACAATTATTTTTAAATTTCTTATTTGGGTCTTAACCATTTCTATTTCTTCCCTCTTCTTCTCATCCATGGCAGAATCCAAAAATCCTCTTCTTCTCACCTTCAACCTTTTTTCTCTTCCTCCATGAACTCCTCCCCAGACTCCGGCGGCGGCGACATCGGTGGTTTCCCATACATCCTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGCCGCCGAATCGCCGTCTCCCGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCACGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACTGTGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGCTCTCCACCCCTTTGGCGGAGGTGATTCCGTTGGCCGTCGGAAGAAGTTGAAAAAACTGACGTGTAAATATATTTTAATTTTTTTCTCATAGCAATACTTTATTTTTCTTTCTTCAAAATAATTATAATTTTATAGTTTAGTTTAGTTTTTTAATTAAATAATATTTTTATAGTTTAGTTTAAACT

mRNA sequence

ATTTGATGTATTATTCACAATTATTTTTAAATTTCTTATTTGGGTCTTAACCATTTCTATTTCTTCCCTCTTCTTCTCATCCATGGCAGAATCCAAAAATCCTCTTCTTCTCACCTTCAACCTTTTTTCTCTTCCTCCATGAACTCCTCCCCAGACTCCGGCGGCGGCGACATCGGTGGTTTCCCATACATCCTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGCCGCCGAATCGCCGTCTCCCGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCACGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACTGTGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGCTCTCCACCCCTTTGGCGGAGGTGATTCCGTTGGCCGTCGGAAGAAGTTGAAAAAACTGACGTGTAAATATATTTTAATTTTTTTCTCATAGCAATACTTTATTTTTCTTTCTTCAAAATAATTATAATTTTATAGTTTAGTTTAGTTTTTTAATTAAATAATATTTTTATAGTTTAGTTTAAACT

Coding sequence (CDS)

ATGAACTCCTCCCCAGACTCCGGCGGCGGCGACATCGGTGGTTTCCCATACATCCTCGGAATTTCAGTCGGAATCCTCTTCCTCCTCACAACCCTTACAATCACTACCTATTTATGTACCAGAACCACCGTTCCGCCGCCGAATCGCCGTCTCCCGCAGGGGGGACGGCGGGATTTCGTCGTGGATTTTGTACAGGGGCTAGAAGATGAGGTTATTAATGGATATCCGAAGATTCTGTACTCGGAGGCGAAATTGGAAAGGAAATTGGAGTCCGCCGCCACGAATGGTTGTTCGATTTGTTTGGTGGATTATAAAGACGACGACGTTTTGCGGTTGTTGCCAGACTGTGGCCATCTGTTTCACTGTGGTTGTATTGATCCGTGGTTGCGGCTGAACCCTAGCTGCCCTGTTTGTAGAACTTCGCCAGTGCCGACGCCGCTCTCCACCCCTTTGGCGGAGGTGATTCCGTTGGCCGTCGGAAGAAGTTGA

Protein sequence

MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS*

Homology

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BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot
Match: Q8RX29 (RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.9e-42
Identity = 85/157 (54.14%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 8   GGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRR------DFVV 67
           G  DIGGF Y +G+S+G+L L+TT+T+T+Y CTR  +     +  Q   R        ++
Sbjct: 57  GTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVII 116

Query: 68  DFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLFH 127
           D V GL+++ I  YPKILYSEAK          + C+ICL DYK   +LR LPDC HLFH
Sbjct: 117 DVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFH 176

Query: 128 CGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
             CID WLRLNP+CPVCRTSP+PTPLSTPLAEV+PLA
Sbjct: 177 LKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot
Match: Q9FG21 (Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 9.3e-41
Identity = 86/171 (50.29%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 12  IGGFPYILGISVGILFLLTTLTITTYLCTR-------TTVPPPNRR-------LPQGGRR 71
           +GG  Y +G+S+GIL L+TT+T+T+Y CTR       TT P   RR       LP G  R
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 72  --------DFVVDFVQGLEDEVINGYPKILYSEAKLERKL--ESAATNGCSICLVDYKDD 131
                   D VV  V GL +EVI G+PK+ Y EA++   L  ES+ T+ CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 132 DVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+V+P +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot
Match: O82353 (RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 3.4e-27
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 14  GFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVV------------ 73
           GF Y + I++G L LL+T+ +++Y+C R +          G R   V+            
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 74  ------DFVQGLEDEVINGYPKILYSEAKLERKLESAATNG---CSICLVDYKDDDVLRL 133
                 D V GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 134 LPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVIPLA 159
           +P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EV+PL+
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot
Match: Q9M313 (RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 14  GFPYILGISVGILFLLTTLTITTYLCTRTT---------VPPPNRRLPQGG----RRDFV 73
           G  Y + I++G L L++T+ +++Y+C R +             N      G    R  FV
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 74  VD---------FVQGLEDEVINGYPKILYSEAKLERKLESAATNG------------CSI 133
            +          V GL+  VIN YPK  ++      K  +A  NG            CSI
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFT------KDITAVVNGDGFHDGEGRETTCSI 144

Query: 134 CLVDYKDDDVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVI 159
           CL +Y ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EV+
Sbjct: 145 CLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVV 201

[Close]

BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 57/162 (35.19%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 4   SPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVVDF 63
           SP + G  +G   Y + I+V IL L++ + + +Y+C R+     +         D V+D 
Sbjct: 5   SPPASGVGLG---YGIAIAVSILVLISFIMLASYICIRSKSTGRDE-----ATSDVVLDL 64

Query: 64  VQ-------GLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 123
                    GL+  VI  YP+I+  ++   R+L       CSICL DY+  + +R +P+C
Sbjct: 65  PSPAAEVKLGLDRPVIESYPRIVLGDS---RRLPRPNNGPCSICLCDYEAREPVRCIPEC 124

Query: 124 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
            H FH  C+D WLR + +CP+CR SP P+ L+TPL++++PLA
Sbjct: 125 NHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

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BLAST of CsGy3G033240 vs. NCBI nr
Match: KGN59365.2 (hypothetical protein Csa_002562 [Cucumis sativus])

HSP 1 Score: 335 bits (859), Expect = 2.85e-113
Identity = 160/162 (98.77%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60
           MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV
Sbjct: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           HCGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVIPLAVGR+
Sbjct: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRN 162

[Close]

BLAST of CsGy3G033240 vs. NCBI nr
Match: KAA0043799.1 (RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa])

HSP 1 Score: 306 bits (784), Expect = 1.21e-104
Identity = 147/162 (90.74%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60
           MNS  DSGGGDIG FP+I+GISVGILFLLTTLTITTYLCTRTTVP PNRRL Q GRRDFV
Sbjct: 1   MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAA NGCSICLVDYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           H  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEV+PLA+GRS
Sbjct: 121 HGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of CsGy3G033240 vs. NCBI nr
Match: XP_022935317.1 (RING-H2 finger protein ATL70-like [Cucurbita moschata])

HSP 1 Score: 265 bits (676), Expect = 4.02e-88
Identity = 130/166 (78.31%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEV+PLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CsGy3G033240 vs. NCBI nr
Match: XP_023528902.1 (RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264 bits (675), Expect = 5.71e-88
Identity = 129/166 (77.71%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEV+PLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CsGy3G033240 vs. NCBI nr
Match: KAG6580759.1 (putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017512.1 putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 263 bits (673), Expect = 1.15e-87
Identity = 129/165 (78.18%), Postives = 141/165 (85.45%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGR 161
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEV+PLA GR
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGR 165

[Close]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL
Match: A0A0A0LEU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 PE=4 SV=1)

HSP 1 Score: 336 bits (862), Expect = 7.43e-117
Identity = 161/162 (99.38%), Postives = 162/162 (100.00%), Query Frame = 0


Query: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60
           MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV
Sbjct: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           HCGCIDPWLRLNPSCPVCRTSPVPTP+STPLAEVIPLAVGRS
Sbjct: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPISTPLAEVIPLAVGRS 162

[Close]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL
Match: A0A5A7TRH5 (RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004730 PE=4 SV=1)

HSP 1 Score: 306 bits (784), Expect = 5.84e-105
Identity = 147/162 (90.74%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MNSSPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFV 60
           MNS  DSGGGDIG FP+I+GISVGILFLLTTLTITTYLCTRTTVP PNRRL Q GRRDFV
Sbjct: 1   MNSPSDSGGGDIGSFPFIVGISVGILFLLTTLTITTYLCTRTTVPQPNRRLQQEGRRDFV 60

Query: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLF 120
           VDFVQGLEDEVINGYPKILYSEAKLERKLESAA NGCSICLVDYKDDDVLRLLPDCGHLF
Sbjct: 61  VDFVQGLEDEVINGYPKILYSEAKLERKLESAAANGCSICLVDYKDDDVLRLLPDCGHLF 120

Query: 121 HCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           H  CIDPWLRLNPSCPVCRTSP+PTP+STPLAEV+PLA+GRS
Sbjct: 121 HGSCIDPWLRLNPSCPVCRTSPLPTPISTPLAEVVPLAIGRS 162

[Close]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL
Match: A0A6J1F576 (RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 PE=4 SV=1)

HSP 1 Score: 265 bits (676), Expect = 1.95e-88
Identity = 130/166 (78.31%), Postives = 142/166 (85.54%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP PNRR   G R
Sbjct: 1   MNNSTGSGGSDATGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQPNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE KLESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDAIVDFGPGLEDEAINEYPKILYSEKKLEGKLESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEV+PLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL
Match: A0A6J1J186 (RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 9.24e-87
Identity = 128/166 (77.11%), Postives = 141/166 (84.94%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGR 60
           MN+S  SGG    G++G FPYI+GISVG+LFLLTT+TI TYLCTRTTVP  NRR   G R
Sbjct: 1   MNNSTGSGGSDASGNVGTFPYIVGISVGVLFLLTTVTIATYLCTRTTVPQLNRRRRPGER 60

Query: 61  RDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 120
           RD +VDF  GLEDE IN YPKILYSE KLE K+ESAA +GCSICL DYK++DVLRLLPDC
Sbjct: 61  RDVIVDFGPGLEDEAINEYPKILYSEKKLEGKMESAAASGCSICLGDYKNEDVLRLLPDC 120

Query: 121 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGRS 162
           GH+FH GCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEV+PLA GRS
Sbjct: 121 GHMFHSGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVVPLANGRS 166

[Close]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL
Match: A0A498I2L1 (RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_019302 PE=4 SV=1)

HSP 1 Score: 197 bits (502), Expect = 6.65e-62
Identity = 103/172 (59.88%), Postives = 125/172 (72.67%), Query Frame = 0


Query: 1   MNSSPDSGG----GDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPP--PNRR---- 60
           MN++ DSGG     +IG F Y +G+SVGIL L+TT+T+ +Y C RT  PP  P RR    
Sbjct: 1   MNATSDSGGFLGSNNIGSFGYGIGVSVGILLLITTITLASYFCARTQQPPAPPTRRNTRD 60

Query: 61  -LPQGGRRDFVVDFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDV 120
            +   G  +FVVD   GL+D  I  YPK+LYSEAKL++K  +A+   CSICL DYK+ D+
Sbjct: 61  AMDPPGLENFVVDI--GLDDNTIQSYPKMLYSEAKLQKKNSTASC--CSICLADYKNSDM 120

Query: 121 LRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLAVGR 161
           LRLLPDC HLFH  CIDPWLRLNP+CPVCRTSP+PTPLSTPLAEV+PLA  R
Sbjct: 121 LRLLPDCRHLFHLKCIDPWLRLNPTCPVCRTSPIPTPLSTPLAEVVPLASRR 168

[Close]

BLAST of CsGy3G033240 vs. TAIR 10
Match: AT2G35910.1 (RING/U-box superfamily protein )

HSP 1 Score: 172.2 bits (435), Expect = 3.5e-43
Identity = 85/157 (54.14%), Postives = 106/157 (67.52%), Query Frame = 0


Query: 8   GGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRR------DFVV 67
           G  DIGGF Y +G+S+G+L L+TT+T+T+Y CTR  +     +  Q   R        ++
Sbjct: 57  GTDDIGGFRYGIGVSIGVLLLITTITLTSYYCTRNQLSSSPSQTNQDSTRIHHHHHHVII 116

Query: 68  DFVQGLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDCGHLFH 127
           D V GL+++ I  YPKILYSEAK          + C+ICL DYK   +LR LPDC HLFH
Sbjct: 117 DVVPGLDEDTIQSYPKILYSEAK-----GPTTASCCAICLGDYKGKHLLRQLPDCNHLFH 176

Query: 128 CGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
             CID WLRLNP+CPVCRTSP+PTPLSTPLAEV+PLA
Sbjct: 177 LKCIDTWLRLNPTCPVCRTSPLPTPLSTPLAEVVPLA 208

[Close]

BLAST of CsGy3G033240 vs. TAIR 10
Match: AT5G06490.1 (RING/U-box superfamily protein )

HSP 1 Score: 167.9 bits (424), Expect = 6.6e-42
Identity = 86/171 (50.29%), Postives = 113/171 (66.08%), Query Frame = 0


Query: 12  IGGFPYILGISVGILFLLTTLTITTYLCTR-------TTVPPPNRR-------LPQGGRR 71
           +GG  Y +G+S+GIL L+TT+T+T+Y CTR       TT P   RR       LP G  R
Sbjct: 20  MGGLAYGIGVSIGILMLITTITLTSYYCTRSHISASPTTTPRTRRRQRESNGTLPPGQER 79

Query: 72  --------DFVVDFVQGLEDEVINGYPKILYSEAKLERKL--ESAATNGCSICLVDYKDD 131
                   D VV  V GL +EVI G+PK+ Y EA++   L  ES+ T+ CSICL DYK  
Sbjct: 80  FDFEDDESDTVVVEVLGLTEEVIKGFPKLPYEEARVSYSLQKESSTTSCCSICLADYKKM 139

Query: 132 DVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
           D++R+LPDC HLFH  C+DPWLRL+P+CPVCRTSP+P+P  TP+A+V+P +
Sbjct: 140 DMIRVLPDCNHLFHDNCVDPWLRLHPTCPVCRTSPLPSPAMTPVADVVPFS 190

[Close]

BLAST of CsGy3G033240 vs. TAIR 10
Match: AT2G46160.1 (RING/U-box superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 2.4e-28
Identity = 67/170 (39.41%), Postives = 95/170 (55.88%), Query Frame = 0


Query: 14  GFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVV------------ 73
           GF Y + I++G L LL+T+ +++Y+C R +          G R   V+            
Sbjct: 34  GFGYSIAIALGFLVLLSTVLLSSYICCRDSRRRTTAVESTGDRGGSVILPRIIFVAEEDN 93

Query: 74  ------DFVQGLEDEVINGYPKILYSEAKLERKLESAATNG---CSICLVDYKDDDVLRL 133
                 D V GL+  VIN YPK  +S+       +     G   CSICL +YK+ ++LR+
Sbjct: 94  EDLEAGDVVVGLDQAVINSYPKFHFSKDTSAASSDGFGGGGDTTCSICLCEYKEAEMLRM 153

Query: 134 LPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVIPLA 159
           +P+C H FH  C+D WL+LN SCPVCR SP+P    TPLSTPL+EV+PL+
Sbjct: 154 MPECKHYFHLCCLDAWLKLNGSCPVCRNSPLPTPTSTPLSTPLSEVVPLS 203

[Close]

BLAST of CsGy3G033240 vs. TAIR 10
Match: AT3G61550.1 (RING/U-box superfamily protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-23
Identity = 66/183 (36.07%), Postives = 96/183 (52.46%), Query Frame = 0


Query: 14  GFPYILGISVGILFLLTTLTITTYLCTRTT---------VPPPNRRLPQGG----RRDFV 73
           G  Y + I++G L L++T+ +++Y+C R +             N      G    R  FV
Sbjct: 25  GLGYSIAIALGFLVLISTIILSSYICCRASRLRFSASAANANANASFSDRGVIVPRIIFV 84

Query: 74  VD---------FVQGLEDEVINGYPKILYSEAKLERKLESAATNG------------CSI 133
            +          V GL+  VIN YPK  ++      K  +A  NG            CSI
Sbjct: 85  AEDDDLESGNVVVGGLDHSVINSYPKFHFT------KDITAVVNGDGFHDGEGRETTCSI 144

Query: 134 CLVDYKDDDVLRLLPDCGHLFHCGCIDPWLRLNPSCPVCRTSPVP----TPLSTPLAEVI 159
           CL +Y ++++LR++P+C H FH  C+D WL+LN SCPVCR SP+P    TP STPL+EV+
Sbjct: 145 CLCEYMEEEMLRMMPECKHYFHVYCLDAWLKLNGSCPVCRNSPLPTPQSTPQSTPLSEVV 201

[Close]

BLAST of CsGy3G033240 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-23
Identity = 57/162 (35.19%), Postives = 91/162 (56.17%), Query Frame = 0


Query: 4   SPDSGGGDIGGFPYILGISVGILFLLTTLTITTYLCTRTTVPPPNRRLPQGGRRDFVVDF 63
           SP + G  +G   Y + I+V IL L++ + + +Y+C R+     +         D V+D 
Sbjct: 5   SPPASGVGLG---YGIAIAVSILVLISFIMLASYICIRSKSTGRDE-----ATSDVVLDL 64

Query: 64  VQ-------GLEDEVINGYPKILYSEAKLERKLESAATNGCSICLVDYKDDDVLRLLPDC 123
                    GL+  VI  YP+I+  ++   R+L       CSICL DY+  + +R +P+C
Sbjct: 65  PSPAAEVKLGLDRPVIESYPRIVLGDS---RRLPRPNNGPCSICLCDYEAREPVRCIPEC 124

Query: 124 GHLFHCGCIDPWLRLNPSCPVCRTSPVPTPLSTPLAEVIPLA 159
            H FH  C+D WLR + +CP+CR SP P+ L+TPL++++PLA
Sbjct: 125 NHCFHTDCVDEWLRTSATCPLCRNSPAPSRLATPLSDLVPLA 155

The following BLAST results are available for this feature:

BLAST of CsGy3G033240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RX29	4.9e-42	54.14	RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1	[more]
Q9FG21	9.3e-41	50.29	Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 P...	[more]
O82353	3.4e-27	39.41	RING-H2 finger protein ATL67 OS=Arabidopsis thaliana OX=3702 GN=ATL67 PE=2 SV=1	[more]
Q9M313	1.5e-22	36.07	RING-H2 finger protein ATL68 OS=Arabidopsis thaliana OX=3702 GN=ATL68 PE=2 SV=1	[more]
Q9FL42	2.5e-22	35.19	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]

BLAST of CsGy3G033240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59365.2	2.85e-113	98.77	hypothetical protein Csa_002562 [Cucumis sativus]	[more]
KAA0043799.1	1.21e-104	90.74	RING-H2 finger protein ATL70-like [Cucumis melo var. makuwa] >TYK25334.1 RING-H2...	[more]
XP_022935317.1	4.02e-88	78.31	RING-H2 finger protein ATL70-like [Cucurbita moschata]	[more]
XP_023528902.1	5.71e-88	77.71	RING-H2 finger protein ATL70 [Cucurbita pepo subsp. pepo]	[more]
KAG6580759.1	1.15e-87	78.18	putative RING-H2 finger protein ATL71, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of CsGy3G033240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEU3	7.43e-117	99.38	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G782740 P...	[more]
A0A5A7TRH5	5.84e-105	90.74	RING-H2 finger protein ATL70-like OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1F576	1.95e-88	78.31	RING-H2 finger protein ATL70-like OS=Cucurbita moschata OX=3662 GN=LOC111442240 ...	[more]
A0A6J1J186	9.24e-87	77.11	RING-H2 finger protein ATL70-like OS=Cucurbita maxima OX=3661 GN=LOC111481769 PE...	[more]
A0A498I2L1	6.65e-62	59.88	RING-type domain-containing protein OS=Malus domestica OX=3750 GN=DVH24_019302 P...	[more]

BLAST of CsGy3G033240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G35910.1	3.5e-43	54.14	RING/U-box superfamily protein	[more]
AT5G06490.1	6.6e-42	50.29	RING/U-box superfamily protein	[more]
AT2G46160.1	2.4e-28	39.41	RING/U-box superfamily protein	[more]
AT3G61550.1	1.1e-23	36.07	RING/U-box superfamily protein	[more]
AT5G07040.1	1.8e-23	35.19	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 97..138 e-value: 5.6E-7 score: 39.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 97..139 e-value: 3.3E-13 score: 49.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 97..139 score: 12.54829
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 61..144 e-value: 8.0E-21 score: 75.5
None	No IPR available	PANTHER	PTHR46719	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 10..160
None	No IPR available	PANTHER	PTHR46719:SF7	RING-H2 FINGER PROTEIN ATL71-RELATED	coord: 10..160
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 97..139 e-value: 4.71338E-21 score: 78.8829
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 71..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G033240.1	CsGy3G033240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding