CsGy3G032235 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G032235
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionprotein LITTLE ZIPPER 4
LocationGy14Chr3: 31636554 .. 31638526 (+)
RNA-Seq ExpressionCsGy3G032235
SyntenyCsGy3G032235
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTATTCAAAATAAAAATATTTTATATTTTTTAGATTATATAAAATGATTTTTGTGTTTTTAATTTTTGTTTGGGGGGGGTTTCTCTCTCTTAACCTATGACTCTATAAATTAACAGCCACTTTGTTCCATTTGTCCCTCACTTGTTCCCCTTTTTTTTTTTTAGCTTTTCCTTTTCTTCTTCTTCTACTACTACTACTACAAGTGCTTCTGTTACAAAAATCCAGATTGTTTTTGTTTACTTCTCTCTCTGCCCAACAAACCCTCTTAAAAAGGTGATCTTTTTTGAAAAGATAAAGAAAAATCAACACAATACCCACTTTCTCTTTCCTCCATTTCTCTCTCTCTTTCTCTCTTTCTCTCTTTCTCTCTGTCTATATATATATATATATGATTTATATTATTGTTGTTTTTTTTGGGTCTTTTTGTTTTGTTCTTAAGGTTCTCTTCTTGCTTCCCTTTCACCAAGAAAGGTAGACATACCCTTATGTTGTGGGGTACTTCCTTTGTTTTGTTCCTTTTTTTTGTGTGTAAGTTTTGGTTTTTGTTCTTCTAAATTCTAAGTTTCTTCTTCTTCTTCTTCTTCTTCTTCTCTTGTGTTTTTGTATTGAATTCTTCAATTTGATGTCTTTTTCCCCCCCTCAAAACAATTTATTTCCTCTGTTTTTGGTGCAAATTACAGAGGCTTAGTTTACAAGGAAACTTAAGAGGTTCAGAATTTTTAAGTTTCTTATGGTCTTATATGTGGTTGAATATAACTTTAATTATCCTTTTCTTTCATATTTGGGCAACCGAAAGAACAACCCATTTCTTCTTTTTTTTTCCCCCCCTTTTTTTTCTTTTCACAATGAGTGTACATTTTGTCATCCATTTATCCTTATTCTCTCTTTTATTTATTTTTTTCACTCAAAAATCTTTTGTTTAAATTTTTTTTAATTAAAAAAATTCCCTGTTTCGAAGCTGTTTTTGCCTCCTCTTTTTTCCCATTTGTTTCTGTCTCTTTCTCTTCTAACTCTCATTATTACATATGGCTAAGACCAAAGCTTCTTCTTCTTCTTCTTCTTCATCTTCCTCGTTACTGTTGGATTTATCAATCTCTATAAATTAACCTCTCACTATTTTTTCCATTTCCTAATCCTAAAACCCATCTCAACATTTCTATCTTGTGTGCTTCTAATTCCTCTTCTCTGCTTCTTCTCCTATTATTCCTTTTTTTTTTCCTAAATAAATTCTTTGTTTTCCTTTTCAGGGTTTTTTTATTTATTTGGAATTTGGTTGATGTAATATTATCATATATTTATCAACCAAATTGCGATCAATCAATAATCAAATAAGCAAAAGGAAGAAATGGAGAGGCTAAACTCAGAGTTATACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAATTGAAATCATCTAATATCAATGGAAGAAGAAGAAGATGATGAAGAAGAAAGAAGAAGAACATGATTATGATGGTGATGATATCATGACCCCACTTAAAGTTTAATCTTATTTTTAATTTTTTTTTTAATGTTTTTCATTTTTTGTGAATTACCATAGCCAACAGTAGCAAGTAGTTTGGGATTTCAGTTATATAGGACAGCATGTAGCTTTAGCATCTTTTTTTTTCTTTTTTTTTTGAATTTCTTATATCTTTTTTTGGGGGGGTTAGGATATGGATTTTCTGTACTTCAAAATGATGTATCAGGCTATCTAATGGAAAAACCAATTTCACATTATAAGTTTTTCTTTCTCATATCAAATTGTGATTGTAATTGAAAAGGCCTTAAATGGGCTTGCTCAAAAATTTAATTT

mRNA sequence

TGTATTCAAAATAAAAATATTTTATATTTTTTAGATTATATAAAATGATTTTTGTGTTTTTAATTTTTGTTTGGGGGGGGTTTCTCTCTCTTAACCTATGACTCTATAAATTAACAGCCACTTTGTTCCATTTGTCCCTCACTTGTTCCCCTTTTTTTTTTTTAGCTTTTCCTTTTCTTCTTCTTCTACTACTACTACTACAAGTGCTTCTGTTACAAAAATCCAGATTGTTTTTGTTTACTTCTCTCTCTGCCCAACAAACCCTCTTAAAAAGGGTTTTTTTATTTATTTGGAATTTGGTTGATGTAATATTATCATATATTTATCAACCAAATTGCGATCAATCAATAATCAAATAAGCAAAAGGAAGAAATGGAGAGGCTAAACTCAGAGTTATACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAATTGAAATCATCTAATATCAATGGAAGAAGAAGAAGATGATGAAGAAGAAAGAAGAAGAACATGATTATGATGGTGATGATATCATGACCCCACTTAAAGTTTAATCTTATTTTTAATTTTTTTTTTAATGTTTTTCATTTTTTGTGAATTACCATAGCCAACAGTAGCAAGTAGTTTGGGATTTCAGTTATATAGGACAGCATGTAGCTTTAGCATCTTTTTTTTTCTTTTTTTTTTGAATTTCTTATATCTTTTTTTGGGGGGGTTAGGATATGGATTTTCTGTACTTCAAAATGATGTATCAGGCTATCTAATGGAAAAACCAATTTCACATTATAAGTTTTTCTTTCTCATATCAAATTGTGATTGTAATTGAAAAGGCCTTAAATGGGCTTGCTCAAAAATTTAATTT

Coding sequence (CDS)

ATGGAGAGGCTAAACTCAGAGTTATACTTGCAAAACTGTTACATAATGAAGGAAAATGAGAGACTGAGGAAGAAAGCTCAACTTTTGAACCAAGAAAATCAAGCTCTTCTTTCAGAACTGAAGCAGAAATTATCAAAAGGAAATTCAAAAGCCAATGCTTCAAAATCAATTCCTGATCTTAATCTCTCCTCTGCAAATCCTTCTAATTCTTCCAATTGA

Protein sequence

MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDLNLSSANPSNSSN*
Homology
BLAST of CsGy3G032235 vs. ExPASy Swiss-Prot
Match: Q56WL5 (Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 7.4e-14
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLS--KGNSKANASKSIP 60
          MERLNS+LYLQNCYI+KENERLRKKAQ+LNQENQ LL ELKQKLS  K +S +N   +  
Sbjct: 1  MERLNSKLYLQNCYIIKENERLRKKAQILNQENQQLLFELKQKLSKTKNSSGSNQGNNNN 60

Query: 61 DLNLSSANPSN 70
          + NLSS++ ++
Sbjct: 61 NNNLSSSSSAS 71

BLAST of CsGy3G032235 vs. ExPASy Swiss-Prot
Match: Q9LXI8 (Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-12
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

BLAST of CsGy3G032235 vs. NCBI nr
Match: XP_008442826.1 (PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_011652008.1 protein LITTLE ZIPPER 4 [Cucumis sativus] >XP_038905261.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905262.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >XP_038905263.1 protein LITTLE ZIPPER 4 [Benincasa hispida] >KGN59119.1 hypothetical protein Csa_001986 [Cucumis sativus])

HSP 1 Score: 129 bits (325), Expect = 1.70e-37
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. NCBI nr
Match: XP_022935644.1 (protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPPER 4 [Cucurbita maxima] >XP_023526116.1 protein LITTLE ZIPPER 4 [Cucurbita pepo subsp. pepo] >KAG7017444.1 Protein LITTLE ZIPPER 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126 bits (317), Expect = 2.82e-36
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. NCBI nr
Match: XP_022144704.1 (protein LITTLE ZIPPER 4 [Momordica charantia])

HSP 1 Score: 113 bits (282), Expect = 6.91e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANAS-KSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NAS KSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 72
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

BLAST of CsGy3G032235 vs. NCBI nr
Match: KAF3441681.1 (hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis])

HSP 1 Score: 112 bits (280), Expect = 1.36e-30
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+K NSK+NA+KSIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKSNATKSIPDL 60

Query: 61 NLSSA---NPSNSSN 72
          NLSS    NPS SSN
Sbjct: 61 NLSSTSNQNPSGSSN 75

BLAST of CsGy3G032235 vs. NCBI nr
Match: XP_021639017.1 (protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639020.1 protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 112 bits (280), Expect = 1.40e-30
Identity = 65/74 (87.84%), Postives = 68/74 (91.89%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+LYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSK NSKANA  SIPDL
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKANSKANAPNSIPDL 60

Query: 61 NLSSA---NPSNSS 71
          NLSS+   NP+NSS
Sbjct: 61 NLSSSSSHNPTNSS 74

BLAST of CsGy3G032235 vs. ExPASy TrEMBL
Match: A0A1S3B7E3 (protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.22e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. ExPASy TrEMBL
Match: A0A0A0LE03 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1)

HSP 1 Score: 129 bits (325), Expect = 8.22e-38
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. ExPASy TrEMBL
Match: A0A6J1J6J7 (protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.37e-36
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. ExPASy TrEMBL
Match: A0A6J1F606 (protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 1.37e-36
Identity = 70/72 (97.22%), Postives = 72/72 (100.00%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKG+SKAN+SKSIPDL
Sbjct: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGSSKANSSKSIPDL 60

Query: 61 NLSSANPSNSSN 72
          NLSSANPSNSSN
Sbjct: 61 NLSSANPSNSSN 72

BLAST of CsGy3G032235 vs. ExPASy TrEMBL
Match: A0A6J1CT31 (protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1)

HSP 1 Score: 113 bits (282), Expect = 3.35e-31
Identity = 67/76 (88.16%), Postives = 71/76 (93.42%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANAS-KSIPD 60
          MERLNS+LYLQNCYIMKENERLRKKAQ+LNQENQALLSELKQKLSKG+SK NAS KSIPD
Sbjct: 1  MERLNSDLYLQNCYIMKENERLRKKAQILNQENQALLSELKQKLSKGSSKGNASSKSIPD 60

Query: 61 LNLSSA---NPSNSSN 72
          LNLSSA   NPSNS+N
Sbjct: 61 LNLSSASVTNPSNSTN 76

BLAST of CsGy3G032235 vs. TAIR 10
Match: AT3G52770.1 (protein binding )

HSP 1 Score: 73.6 bits (179), Expect = 7.6e-14
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0

Query: 1  MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNSKANASKSIPDL 60
          MERLNS+L+++NCYIMKENERLRKKA+LLNQENQ LL +LKQKLSK  +  N S +  D 
Sbjct: 1  MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSKTKNSNNGSNN--DN 60

Query: 61 NLSSAN 67
            SSA+
Sbjct: 61 KSSSAS 64

BLAST of CsGy3G032235 vs. TAIR 10
Match: AT2G45450.1 (protein binding )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/43 (53.49%), Postives = 34/43 (79.07%), Query Frame = 0

Query: 1   MERLNSELYLQNCYIMKENERLRKKAQLLNQENQALLSELKQK 44
           ME +N +LY++N  I++ENE+L+KKA LL+QEN+ L S L+ K
Sbjct: 87  MEMINLKLYVENQNIIRENEKLKKKALLLHQENKTLFSLLQTK 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q56WL57.4e-1466.20Protein LITTLE ZIPPER 4 OS=Arabidopsis thaliana OX=3702 GN=ZPR4 PE=1 SV=1[more]
Q9LXI81.1e-1266.67Protein LITTLE ZIPPER 3 OS=Arabidopsis thaliana OX=3702 GN=ZPR3 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
XP_008442826.11.70e-37100.00PREDICTED: protein LITTLE ZIPPER 4 [Cucumis melo] >XP_008442827.1 PREDICTED: pro... [more]
XP_022935644.12.82e-3697.22protein LITTLE ZIPPER 4 [Cucurbita moschata] >XP_022983169.1 protein LITTLE ZIPP... [more]
XP_022144704.16.91e-3188.16protein LITTLE ZIPPER 4 [Momordica charantia][more]
KAF3441681.11.36e-3086.67hypothetical protein FNV43_RR15596 [Rhamnella rubrinervis][more]
XP_021639017.11.40e-3087.84protein LITTLE ZIPPER 4 isoform X2 [Hevea brasiliensis] >XP_021639018.1 protein ... [more]
Match NameE-valueIdentityDescription
A0A1S3B7E38.22e-38100.00protein LITTLE ZIPPER 4 OS=Cucumis melo OX=3656 GN=LOC103486597 PE=4 SV=1[more]
A0A0A0LE038.22e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776310 PE=4 SV=1[more]
A0A6J1J6J71.37e-3697.22protein LITTLE ZIPPER 4 OS=Cucurbita maxima OX=3661 GN=LOC111481803 PE=4 SV=1[more]
A0A6J1F6061.37e-3697.22protein LITTLE ZIPPER 4 OS=Cucurbita moschata OX=3662 GN=LOC111442436 PE=4 SV=1[more]
A0A6J1CT313.35e-3188.16protein LITTLE ZIPPER 4 OS=Momordica charantia OX=3673 GN=LOC111014328 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G52770.17.6e-1466.67protein binding [more]
AT2G45450.11.4e-0453.49protein binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 19..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..72
NoneNo IPR availablePANTHERPTHR33601:SF1PROTEIN LITTLE ZIPPER 4coord: 1..71
IPR039312Protein LITTLE ZIPPERPANTHERPTHR33601PROTEIN LITTLE ZIPPER 4coord: 1..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G032235.1CsGy3G032235.1mRNA