CsGy3G030170 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G030170
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	metallothionein-like protein type 2
Location	Gy14Chr3: 30288890 .. 30289524 (-)
RNA-Seq Expression	CsGy3G030170
Synteny	CsGy3G030170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTGCTGTGGCGGAAACTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAATGGCTGTGGAGGGTGAGTAACCTCTCGCCAATTAACTCTTTTGAGTTTGATCGAGTGAAATTGCTTTTAGTTCGCGTATGATTTTGTGGAGAGCATGATCTCTCGAGAATCTGATCTTCTGTTTTCTTTTACATCGCTTTCGATTTCTTAATCTTCTACATATCTTTGTCCCTCGTTCGACGGCGATCCGATCACTTGCCGATTATCTTCATTCGTACGATCAAGGCGGATTTTCTTGTGAAGTTTCTGAAAATGACTACGGTGTTCATTTCACCCGAGGATAATCGCGATGATTCTGATGTTTTGATATTTTGTCATGCAGATGCAAGAGTTTCCCTGACTTGAGCTTCTCAGAGACCTCTGCTACGATCGACACTTTCGTAGTCGGTTTCGCTCCTCAGAAGATGTAAGTTTCTGCAATCAAGCCTAATTTTTCAAGAGAGGTTTCGGTATTTAGTGATGATTTTATTTAACAATATCGGCGTTTTCGATACCAGGTCCTACGAGGTAGCAGAGATGGGAGCCGAGAACGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCACCTGTAAATGA

mRNA sequence

ATGTCTTGCTGTGGCGGAAACTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAATGGCTGTGGAGGATGCAAGAGTTTCCCTGACTTGAGCTTCTCAGAGACCTCTGCTACGATCGACACTTTCGTAGTCGGTTTCGCTCCTCAGAAGATGTCCTACGAGGTAGCAGAGATGGGAGCCGAGAACGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCACCTGTAAATGA

Coding sequence (CDS)

ATGTCTTGCTGTGGCGGAAACTGTGGATGCGGCTCTGGCTGCAAGTGCGGAAATGGCTGTGGAGGATGCAAGAGTTTCCCTGACTTGAGCTTCTCAGAGACCTCTGCTACGATCGACACTTTCGTAGTCGGTTTCGCTCCTCAGAAGATGTCCTACGAGGTAGCAGAGATGGGAGCCGAGAACGGCTGCAAGTGCGGTGACAACTGCACCTGCGATCCATGCACCTGTAAATGA

Protein sequence

MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAENGCKCGDNCTCDPCTCK*

Homology

[Close]

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot
Match: Q40158 (Metallothionein-like protein type 2 B OS=Solanum lycopersicum OX=4081 GN=MTB PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-26
Identity = 52/80 (65.00%), Postives = 63/80 (78.75%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMG-- 60
          MSCCGGNCGCGS CKCGNGCGGCK +PD+S++E+S T +T V+G  P+K S+   EMG  
Sbjct: 1  MSCCGGNCGCGSSCKCGNGCGGCKMYPDMSYTESSTTTETLVLGVGPEKTSFGAMEMGES 60

Query: 61 --AENGCKCGDNCTCDPCTC 77
            AENGCKCG +C C+PCTC
Sbjct: 61 PVAENGCKCGSDCKCNPCTC 80

[Close]

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot
Match: P30564 (Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-26
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGA- 60
          MSCCGGNCGCGSGCKCGNGCGGCK +PD+SFSE + T +T V+G   +K  +E  EMG  
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPDMSFSEKTTT-ETLVLGVGAEKAHFEGGEMGVV 60

Query: 61 ---ENGCKCGDNCTCDPCTCK 78
             E GCKCGDNCTC+PCTCK
Sbjct: 61 GAEEGGCKCGDNCTCNPCTCK 80

[Close]

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot
Match: Q41657 (Metallothionein-like protein type 2 OS=Vicia faba OX=3906 GN=MTI PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-25
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCG+GCGGCK + DLS++E S T +T ++G   +K  YE AEMGAE
Sbjct: 1  MSCCGGNCGCGSSCKCGSGCGGCKMYADLSYTE-STTSETLIMGVGSEKAQYESAEMGAE 60

Query: 61 N-GCKCGDNCTCDPCTCK 78
          N GCKCG NCTC+PCTCK
Sbjct: 61 NDGCKCGANCTCNPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot
Match: P43390 (Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 7.6e-25
Identity = 53/79 (67.09%), Postives = 62/79 (78.48%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMG-- 60
          MSCCGG CGCGS C CG+GCGGC  +PDLS+SE + T +T +VG APQK  +E +EMG  
Sbjct: 1  MSCCGGKCGCGSSCSCGSGCGGCGMYPDLSYSEMTTT-ETLIVGVAPQKTYFEGSEMGVA 60

Query: 61 AENGCKCGDNCTCDPCTCK 78
          AENGCKCG +C CDPCTCK
Sbjct: 61 AENGCKCGSDCKCDPCTCK 78

[Close]

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot
Match: P43398 (Metallothionein-like protein 2 OS=Trifolium repens OX=3899 GN=MT1A PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.0e-24
Identity = 55/78 (70.51%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCK   DLS++E S T +T V+G    K  +E AEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMNADLSYTE-STTTETIVMGVGSAKAQFEGAEMGAE 60

Query: 61 N-GCKCGDNCTCDPCTCK 78
          + GCKCG NCTCDPCTCK
Sbjct: 61 SGGCKCGANCTCDPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. NCBI nr
Match: XP_004137793.1 (metallothionein-like protein type 2 isoform X2 [Cucumis sativus] >KGN58873.1 hypothetical protein Csa_000742 [Cucumis sativus])

HSP 1 Score: 166 bits (419), Expect = 1.09e-51
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPCTCK
Sbjct: 61 NGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. NCBI nr
Match: XP_008442554.1 (PREDICTED: metallothionein-like protein type 2 [Cucumis melo])

HSP 1 Score: 162 bits (410), Expect = 2.57e-50
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCKSFPDLSFSET+ATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKSFPDLSFSETTATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPCTCK
Sbjct: 61 NGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. NCBI nr
Match: XP_031737741.1 (metallothionein-like protein type 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 160 bits (404), Expect = 2.38e-49
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGG----CKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAE 60
          MSCCGGNCGCGSGCKCGNGCGG    CKSFPDLSFSETSATI+TFVVGFAPQKMSYEVAE
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGRIFLCKSFPDLSFSETSATIETFVVGFAPQKMSYEVAE 60

Query: 61 MGAENGCKCGDNCTCDPCTCK 77
          MGAENGCKCGDNCTCDPCTCK
Sbjct: 61 MGAENGCKCGDNCTCDPCTCK 81

[Close]

BLAST of CsGy3G030170 vs. NCBI nr
Match: KAA0044088.1 (metallothionein-like protein type 2 [Cucumis melo var. makuwa] >TYK25049.1 metallothionein-like protein type 2 [Cucumis melo var. makuwa])

HSP 1 Score: 157 bits (397), Expect = 2.87e-48
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCKSFPDLSFSET+ATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKSFPDLSFSETTATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCT 75
          NGCKCGDNCTCDPCT
Sbjct: 61 NGCKCGDNCTCDPCT 75

[Close]

BLAST of CsGy3G030170 vs. NCBI nr
Match: XP_038906044.1 (metallothionein-like protein type 2 [Benincasa hispida])

HSP 1 Score: 156 bits (395), Expect = 5.00e-48
Identity = 70/77 (90.91%), Postives = 75/77 (97.40%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGSGCKCG+GCGGCK FPD+SFSET+ATI+TFVVGFAPQKMS+EVAEMGAE
Sbjct: 1  MSCCGGNCGCGSGCKCGSGCGGCKMFPDMSFSETTATIETFVVGFAPQKMSFEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPC CK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL
Match: A0A0A0LAK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734260 PE=3 SV=1)

HSP 1 Score: 166 bits (419), Expect = 5.25e-52
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPCTCK
Sbjct: 61 NGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL
Match: A0A1S3B6L7 (metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3 SV=1)

HSP 1 Score: 162 bits (410), Expect = 1.24e-50
Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCKSFPDLSFSET+ATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKSFPDLSFSETTATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPCTCK
Sbjct: 61 NGCKCGDNCTCDPCTCK 77

[Close]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL
Match: A0A5D3DP05 (Metallothionein-like protein type 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001700 PE=3 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.39e-48
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCKSFPDLSFSET+ATI+TFVVGFAPQKMSYEVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKSFPDLSFSETTATIETFVVGFAPQKMSYEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCT 75
          NGCKCGDNCTCDPCT
Sbjct: 61 NGCKCGDNCTCDPCT 75

[Close]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL
Match: A0A6J1I8Z4 (metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 PE=3 SV=1)

HSP 1 Score: 154 bits (388), Expect = 2.83e-47
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCK FPD+SFSET+ATI+TFVVG APQKMS+EVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPC CK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL
Match: A0A6J1GBI9 (metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC111452655 PE=3 SV=1)

HSP 1 Score: 154 bits (388), Expect = 2.83e-47
Identity = 69/77 (89.61%), Postives = 73/77 (94.81%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMSYEVAEMGAE 60
          MSCCGGNCGCGS CKCGNGCGGCK FPD+SFSET+ATI+TFVVG APQKMS+EVAEMGAE
Sbjct: 1  MSCCGGNCGCGSACKCGNGCGGCKMFPDMSFSETTATIETFVVGLAPQKMSFEVAEMGAE 60

Query: 61 NGCKCGDNCTCDPCTCK 77
          NGCKCGDNCTCDPC CK
Sbjct: 61 NGCKCGDNCTCDPCNCK 77

[Close]

BLAST of CsGy3G030170 vs. TAIR 10
Match: AT3G09390.1 (metallothionein 2A )

HSP 1 Score: 110.5 bits (275), Expect = 6.0e-25
Identity = 54/81 (66.67%), Postives = 60/81 (74.07%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAP-QKMSYEVA--EM 60
          MSCCGGNCGCGSGCKCGNGCGGCK +PDL FS  + T +TFV+G AP  K  YE +    
Sbjct: 1  MSCCGGNCGCGSGCKCGNGCGGCKMYPDLGFSGETTTTETFVLGVAPAMKNQYEASGESN 60

Query: 61 GAEN-GCKCGDNCTCDPCTCK 78
           AEN  CKCG +C CDPCTCK
Sbjct: 61 NAENDACKCGSDCKCDPCTCK 81

[Close]

BLAST of CsGy3G030170 vs. TAIR 10
Match: AT5G02380.1 (metallothionein 2B )

HSP 1 Score: 91.7 bits (226), Expect = 2.9e-19
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 1  MSCCGGNCGCGSGCKCGNGCGGCKSFPDLSFSETSATIDTFVVGFAPQKMS-YEVA--EM 60
          MSCCGG+CGCGS CKCGNGCGGCK +PDL   E +AT +T V+G AP   S YE +    
Sbjct: 1  MSCCGGSCGCGSACKCGNGCGGCKRYPDL---ENTAT-ETLVLGVAPAMNSQYEASGETF 60

Query: 61 GAEN-GCKCGDNCTCDPCTCK 78
           AEN  CKCG +C C+PCTCK
Sbjct: 61 VAENDACKCGSDCKCNPCTCK 77

The following BLAST results are available for this feature:

BLAST of CsGy3G030170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40158	2.4e-26	65.00	Metallothionein-like protein type 2 B OS=Solanum lycopersicum OX=4081 GN=MTB PE=...	[more]
P30564	2.4e-26	67.90	Metallothionein-like protein type 2 OS=Ricinus communis OX=3988 GN=MTI PE=3 SV=1	[more]
Q41657	1.5e-25	69.23	Metallothionein-like protein type 2 OS=Vicia faba OX=3906 GN=MTI PE=2 SV=1	[more]
P43390	7.6e-25	67.09	Metallothionein-like protein type 2 OS=Actinidia deliciosa OX=3627 GN=pKIWI504 P...	[more]
P43398	1.0e-24	70.51	Metallothionein-like protein 2 OS=Trifolium repens OX=3899 GN=MT1A PE=3 SV=1	[more]

BLAST of CsGy3G030170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137793.1	1.09e-51	98.70	metallothionein-like protein type 2 isoform X2 [Cucumis sativus] >KGN58873.1 hyp...	[more]
XP_008442554.1	2.57e-50	96.10	PREDICTED: metallothionein-like protein type 2 [Cucumis melo]	[more]
XP_031737741.1	2.38e-49	93.83	metallothionein-like protein type 2 isoform X1 [Cucumis sativus]	[more]
KAA0044088.1	2.87e-48	96.00	metallothionein-like protein type 2 [Cucumis melo var. makuwa] >TYK25049.1 metal...	[more]
XP_038906044.1	5.00e-48	90.91	metallothionein-like protein type 2 [Benincasa hispida]	[more]

BLAST of CsGy3G030170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAK4	5.25e-52	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734260 PE=3 SV=1	[more]
A0A1S3B6L7	1.24e-50	96.10	metallothionein-like protein type 2 OS=Cucumis melo OX=3656 GN=LOC103486389 PE=3...	[more]
A0A5D3DP05	1.39e-48	96.00	Metallothionein-like protein type 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A6J1I8Z4	2.83e-47	89.61	metallothionein-like protein type 2 OS=Cucurbita maxima OX=3661 GN=LOC111470252 ...	[more]
A0A6J1GBI9	2.83e-47	89.61	metallothionein-like protein type 2 OS=Cucurbita moschata OX=3662 GN=LOC11145265...	[more]

BLAST of CsGy3G030170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09390.1	6.0e-25	66.67	metallothionein 2A	[more]
AT5G02380.1	2.9e-19	61.73	metallothionein 2B	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000347	Metallothionein, family 15, plant	PFAM	PF01439	Metallothio_2	coord: 1..76 e-value: 1.1E-27 score: 96.8
IPR000347	Metallothionein, family 15, plant	PANTHER	PTHR33543	METALLOTHIONEIN-LIKE PROTEIN 2A	coord: 1..76
None	No IPR available	PANTHER	PTHR33543:SF1	METALLOTHIONEIN-LIKE PROTEIN 2A	coord: 1..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G030170.2	CsGy3G030170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding