CsGy3G029970 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G029970
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	Gy14Chr3: 30192726 .. 30193752 (+)
RNA-Seq Expression	CsGy3G029970
Synteny	CsGy3G029970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGTCATCTCCAAATCCTCAAGATCTAATAGGACCAACCCTCCAGCCTAGCATTTAATTTTAAGGTGGAAAAAAGTAGTTACGGAAAGAAAATTTGAAGAGGGAAAGTTCTGATAACGTTACCGAAGCAGTGGTTGTGGTTGTGTTTGGAGCATTTCCAAATAATGGCGTCCTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTGTAACCATCAAGACAGTCGCCACTGTCTCTTTCAAATTGGGTATTCCGTCCGTGCCAATAGCAGCAGGGCTCGTACCTCTTTCAGGATTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTACGCTCTCTATCCTCTTCAAAATTGTGACCTTTTTTCCCATTACTGTTTCACCTGTTGAAAAAATGGTTTACATCTCAAAAGCTTGAAGAAATCCAGAATAATACATTCATGGGGGCTTGTGAATTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTAGAGCCGAAATTTCAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTGGAGCTGGTGAGGTTTTCTTTTCTTTTTAGTATGAAGAAAACTTTCTATCTTGTACCTTTACTACCCATGTTTACGGGTTTTATCTGTCTGCTTTTTCAGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGATTCCCAGAAAAGTTTTAAACATCTTGAGATCTCCTTTGTGTCTTTTTATTGAAAAAAGAAAAACGATGAAAATTGTAACTGTACCACACGACTTTCAACTGTATCAGAGAATTCTACAATCTTCAAGTTCTTGTACTTCATAAGTAATTTACATAACATTGTCACCGTTCAAAATATGCCACTCTCTTGAGTTCTGTAATGATACCTAATAACCAGAACTCGAGAATATTGCAAATTAAATAAGCCTACAGATTCG

mRNA sequence

CGCGTCATCTCCAAATCCTCAAGATCTAATAGGACCAACCCTCCAGCCTAGCATTTAATTTTAAGGTGGAAAAAAGTAGTTACGGAAAGAAAATTTGAAGAGGGAAAGTTCTGATAACGTTACCGAAGCAGTGGTTGTGGTTGTGTTTGGAGCATTTCCAAATAATGGCGTCCTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTGTAACCATCAAGACAGTCGCCACTGTCTCTTTCAAATTGGGTATTCCGTCCGTGCCAATAGCAGCAGGGCTCGTACCTCTTTCAGGATTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTCAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTGGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGATTCCCAGAAAAGTTTTAAACATCTTGAGATCTCCTTTGTGTCTTTTTATTGAAAAAAGAAAAACGATGAAAATTGTAACTGTACCACACGACTTTCAACTGTATCAGAGAATTCTACAATCTTCAAGTTCTTGTACTTCATAAGTAATTTACATAACATTGTCACCGTTCAAAATATGCCACTCTCTTGAGTTCTGTAATGATACCTAATAACCAGAACTCGAGAATATTGCAAATTAAATAAGCCTACAGATTCG

Coding sequence (CDS)

ATGGCGTCCTCCTCTGTGATTTTATCTTCTCTTCCTCCGGCCAGAGCTCTGACTTGTAACCATCAAGACAGTCGCCACTGTCTCTTTCAAATTGGGTATTCCGTCCGTGCCAATAGCAGCAGGGCTCGTACCTCTTTCAGGATTCAGGCCGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTAGAGCCGAAATTTCAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCTAGAGCCTGCATGATAGGCCTTATTGGGATTTTCGTAGTGGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATGTTGGGAAAGGCCTGGATCTTCCTCTTTGA

Protein sequence

MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL*

Homology

[Close]

BLAST of CsGy3G029970 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.5e-24
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 51  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGV 110
           AAK P GV +PK +PK Q  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV
Sbjct: 41  AAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGV 100

Query: 111 DVGKGLDLPL 121
           ++GKGLDLPL
Sbjct: 101 EIGKGLDLPL 110

[Close]

BLAST of CsGy3G029970 vs. NCBI nr
Match: XP_004137791.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN58853.1 hypothetical protein Csa_001588 [Cucumis sativus])

HSP 1 Score: 235 bits (599), Expect = 8.55e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]

BLAST of CsGy3G029970 vs. NCBI nr
Match: XP_008442523.1 (PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105.1 high-light-induced protein [Cucumis melo var. makuwa] >TYK25033.1 high-light-induced protein [Cucumis melo var. makuwa])

HSP 1 Score: 209 bits (531), Expect = 2.01e-67
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of CsGy3G029970 vs. NCBI nr
Match: XP_038905156.1 (light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida])

HSP 1 Score: 187 bits (476), Expect = 4.73e-59
Identity = 103/121 (85.12%), Postives = 109/121 (90.08%), Query Frame = 0


Query: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60
           MASSS ILSS L PARA  C+ QD R CLFQIG SVRAN+SR+R  FR+QAA KPPAGVE
Sbjct: 1   MASSSAILSSSLLPARAPICSQQDGRLCLFQIG-SVRANNSRSRVPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAE+WNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEVWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 119

[Close]

BLAST of CsGy3G029970 vs. NCBI nr
Match: XP_022934608.1 (light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >XP_022983997.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita maxima] >KAG6580528.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017279.1 Light-harvesting complex-like protein OHP1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180 bits (457), Expect = 3.72e-56
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60
           MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]

BLAST of CsGy3G029970 vs. NCBI nr
Match: XP_022145630.1 (light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia])

HSP 1 Score: 180 bits (456), Expect = 5.28e-56
Identity = 100/121 (82.64%), Postives = 108/121 (89.26%), Query Frame = 0


Query: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60
           MASSS +LSS L PARA T N QD R CLFQIG SVRAN+SRAR  FR+QAA K PAGVE
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIG-SVRANNSRARVPFRVQAA-KLPAGVE 60

Query: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKVEPKF+APFLGFTKTAEIWNSRACM+GL+GIF+VELIL+KGILQVIGVDVGKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLP 119

[Close]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 235 bits (599), Expect = 4.14e-78
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60
           MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60

Query: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120

[Close]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 9.74e-68
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL
Match: A0A1S3B5V9 (high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103486373 PE=4 SV=1)

HSP 1 Score: 209 bits (531), Expect = 9.74e-68
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MASSSVILSSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVEL 60
           MASSSVILSSLPPARALT N QD RH LFQIG SVRAN+SRAR SFR+QAAAKPPAGVEL
Sbjct: 1   MASSSVILSSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVEL 60

Query: 61  PKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLPL 120
           PKVEPKF+APFLGFTKTAEIWNSRACMIGLIG FVVELILNK ILQVIGVDVGKGLDLPL
Sbjct: 61  PKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLPL 120

[Close]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.80e-56
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60
           MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 180 bits (457), Expect = 1.80e-56
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSSVILSS-LPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60
           MASS+ ILSS L PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+QAA KPPAGVE
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQAA-KPPAGVE 60

Query: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120
           LPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLP
Sbjct: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 119

[Close]

BLAST of CsGy3G029970 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 112.1 bits (279), Expect = 3.2e-25
Identity = 54/70 (77.14%), Postives = 62/70 (88.57%), Query Frame = 0


Query: 51  AAKPPAGVELPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGV 110
           AAK P GV +PK +PK Q  FLGFT+TAEIWNSRACMIGLIG F+VELILNKGIL++IGV
Sbjct: 41  AAKLPEGVIVPKAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGV 100

Query: 111 DVGKGLDLPL 121
           ++GKGLDLPL
Sbjct: 101 EIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of CsGy3G029970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	4.5e-24	77.14	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CsGy3G029970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137791.1	8.55e-78	100.00	light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus] >KGN...	[more]
XP_008442523.1	2.01e-67	90.83	PREDICTED: high-light-induced protein, chloroplastic [Cucumis melo] >KAA0044105....	[more]
XP_038905156.1	4.73e-59	85.12	light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]	[more]
XP_022934608.1	3.72e-56	81.82	light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata] >...	[more]
XP_022145630.1	5.28e-56	82.64	light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]	[more]

BLAST of CsGy3G029970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAI0	4.14e-78	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	9.74e-68	90.83	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B5V9	9.74e-68	90.83	high-light-induced protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10348637...	[more]
A0A6J1J0W8	1.80e-56	81.82	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	1.80e-56	81.82	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]

BLAST of CsGy3G029970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	3.2e-25	77.14	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..117
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..117
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G029970.1	CsGy3G029970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane