CsGy3G029880 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G029880
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein of unknown function (DUF604)
Location	Gy14Chr3: 30159214 .. 30160111 (+)
RNA-Seq Expression	CsGy3G029880
Synteny	CsGy3G029880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATATCAGGTGCATAAATGATAAACTTCTTACTACCAATAGTAAAGAATGTAAGTAGACTGATATACATTAGAAAAAGAGTATGTTAGTTTAACCGGTATGCTAAACTTAAAATAGATATACTTGTTGATGTCAAAGTGATATTACAATTGAAATAAATGAAAAGAAAATGAAAACAAAAACAGAGCCGAAATGAGATGGTCAACAAAACTAAACTACCTGGTTCACGGCCCAGAATTTCGATGGAAGCCCGATAAAACCTTAGTGATCCAATAATAATAATTTTTTTTTTTTTTTTTTAGTATATTACCTGTATGAAGGAGGATTTCATTTTTGTACAAACACAATGAGGATTCTGAATGAGAATTCAGTAAAATCCAGTAAATTATTCTTGAAAATCTCACTTGCGTTTTGTTTTTGGTGCATAGCTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGACGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACAAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAG

mRNA sequence

ATGGCTTATATCAGTATATTACCTCTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGACGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACAAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAG

Coding sequence (CDS)

ATGGCTTATATCAGTATATTACCTCTTTTCTTTCCCTCCTCTTTTCCTTCACCCTCAAACCACTCAATAACTGCCCCAACTTCCACCGTGGTCTCCGGATTCGCCGACGAACATATCCCACATCCTCTTCGGGATAGCGCGGTCCACCAAGATATGGAAAAAGCATCAAAGCTACTGCGAGCTATGGACGTGGAAGCTACGCTAACATCACACGTGGGTATTTGTATGGGTGGACAAGAAGCCCAACGCCACGTGGCCCACCACCTCCCCACCTTAAAGAGTCTCAGCCGACACGTTGGATTTCAGCTACACCTGCTGGTACGGCTCCAGGTCAGCCATCAGGGCTGGCGAGGATCATCGTGGAGGAGAGCTTTCGAATTGGGGTTGGAGAATGTGCGGTGGTTTGTGATGGGCGATGATGACACCGTTTTCTTTGTGGAGAATTTGGTTAACGTTTTGGGGAAATACGATCACAATTATCAGATGTAG

Protein sequence

MAYISILPLFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATLTSHVGICMGGQEAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM*

Homology

[Close]

BLAST of CsGy3G029880 vs. NCBI nr
Match: KAE8651001.1 (hypothetical protein Csa_002597, partial [Cucumis sativus])

HSP 1 Score: 317 bits (813), Expect = 3.46e-109
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 9   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 68
           LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL
Sbjct: 1   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 60

Query: 69  TSHVGICMGGQEAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 128
           TSHVGICMGG+EAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG
Sbjct: 61  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 120

Query: 129 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 162
           LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM
Sbjct: 121 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 154

[Close]

BLAST of CsGy3G029880 vs. NCBI nr
Match: KAA0044111.1 (hypothetical protein E6C27_scaffold236G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 8.41e-16
Identity = 51/99 (51.52%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 10  FFPSSFPSPSNHSITAPT-----STVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDV 69
           FFPSSFPSP       P        +     DEHI HPLRDS V     K  K    +  
Sbjct: 6   FFPSSFPSPHKPLDNFPNFHSRCRVLRIATIDEHISHPLRDSGVPPRYGKTVKSYCELWT 65

Query: 70  E--ATLTSHVGICMGGQEAQRHVAHHLPTLKSLSRHVGF 101
              A+  SHV I MGG+EAQRHVAHHLPTL+SLSRHVG+
Sbjct: 66  WKLASPASHVDIRMGGREAQRHVAHHLPTLQSLSRHVGY 104

[Close]

BLAST of CsGy3G029880 vs. NCBI nr
Match: EXB36740.1 (hypothetical protein L484_016992 [Morus notabilis])

HSP 1 Score: 74.3 bits (181), Expect = 1.28e-13
Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 40  PHPLRDSAVHQDMEKASKLLRAMDVEATLTSHVGICMGGQEAQRHVAHHLPTLKSLSRHV 99
           P   R   + Q ME+   +LRA+ VEA    H  IC+  +EA       + TL  L  +V
Sbjct: 3   PKKRRIYRLRQVMERPQAVLRAL-VEAQ--RHERICLARREALVIGNADVATLPILGGYV 62

Query: 100 GFQLHLLVRLQVSHQGWRGSSWRRAFE-LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 159
             Q+ ++VR+ V      GSS     E   LENVRWFVM DD+TVFF++NL  VLGKYDH
Sbjct: 63  EVQVLVIVRIPV------GSSLGEDREGKWLENVRWFVMADDNTVFFIDNLATVLGKYDH 114

[Close]

BLAST of CsGy3G029880 vs. NCBI nr
Match: XP_028119309.1 (uncharacterized protein LOC114316830 [Camellia sinensis])

HSP 1 Score: 76.6 bits (187), Expect = 4.16e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 122 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 159
           + +FELGLENVRWFVMGDDDTVFF+ENLV VLGKYDHN
Sbjct: 163 KESFELGLENVRWFVMGDDDTVFFLENLVTVLGKYDHN 200

[Close]

BLAST of CsGy3G029880 vs. NCBI nr
Match: KAE9448716.1 (hypothetical protein C3L33_19403, partial [Rhododendron williamsianum])

HSP 1 Score: 75.5 bits (184), Expect = 6.40e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 122 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 159
           + +F+LGLENVRWFVMGDDDTVFFV+NLV VLGKYDHN
Sbjct: 134 KESFQLGLENVRWFVMGDDDTVFFVDNLVTVLGKYDHN 171

[Close]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL
Match: A0A0A0LA38 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733990 PE=4 SV=1)

HSP 1 Score: 317 bits (813), Expect = 3.86e-109
Identity = 153/154 (99.35%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 9   LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 68
           LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL
Sbjct: 25  LFFPSSFPSPSNHSITAPTSTVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDVEATL 84

Query: 69  TSHVGICMGGQEAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 128
           TSHVGICMGG+EAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG
Sbjct: 85  TSHVGICMGGREAQRHVAHHLPTLKSLSRHVGFQLHLLVRLQVSHQGWRGSSWRRAFELG 144

Query: 129 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 162
           LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM
Sbjct: 145 LENVRWFVMGDDDTVFFVENLVNVLGKYDHNYQM 178

[Close]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL
Match: A0A5A7TRA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G004630 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.07e-16
Identity = 51/99 (51.52%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 10  FFPSSFPSPSNHSITAPT-----STVVSGFADEHIPHPLRDSAVHQDMEKASKLLRAMDV 69
           FFPSSFPSP       P        +     DEHI HPLRDS V     K  K    +  
Sbjct: 6   FFPSSFPSPHKPLDNFPNFHSRCRVLRIATIDEHISHPLRDSGVPPRYGKTVKSYCELWT 65

Query: 70  E--ATLTSHVGICMGGQEAQRHVAHHLPTLKSLSRHVGF 101
              A+  SHV I MGG+EAQRHVAHHLPTL+SLSRHVG+
Sbjct: 66  WKLASPASHVDIRMGGREAQRHVAHHLPTLQSLSRHVGY 104

[Close]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL
Match: W9R1T8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016992 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.22e-14
Identity = 53/121 (43.80%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 40  PHPLRDSAVHQDMEKASKLLRAMDVEATLTSHVGICMGGQEAQRHVAHHLPTLKSLSRHV 99
           P   R   + Q ME+   +LRA+ VEA    H  IC+  +EA       + TL  L  +V
Sbjct: 3   PKKRRIYRLRQVMERPQAVLRAL-VEAQ--RHERICLARREALVIGNADVATLPILGGYV 62

Query: 100 GFQLHLLVRLQVSHQGWRGSSWRRAFE-LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 159
             Q+ ++VR+ V      GSS     E   LENVRWFVM DD+TVFF++NL  VLGKYDH
Sbjct: 63  EVQVLVIVRIPV------GSSLGEDREGKWLENVRWFVMADDNTVFFIDNLATVLGKYDH 114

[Close]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL
Match: A0A6A4KLQ5 (Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_19403 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 3.10e-13
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 122 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 159
           + +F+LGLENVRWFVMGDDDTVFFV+NLV VLGKYDHN
Sbjct: 134 KESFQLGLENVRWFVMGDDDTVFFVDNLVTVLGKYDHN 171

[Close]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL
Match: A0A7J7HP17 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006592 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.79e-13
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 122 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 159
           + +FELGLENVRWFVMGDDDTVFF+ENLV VLGKYDHN
Sbjct: 163 KESFELGLENVRWFVMGDDDTVFFLENLVTVLGKYDHN 200

[Close]

BLAST of CsGy3G029880 vs. TAIR 10
Match: AT2G37730.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 0


Query: 122 RRAFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 160
           +  FELGL +VRWF+MGDDDTVFFV+NL+ VL KYDHN
Sbjct: 179 KETFELGLTDVRWFIMGDDDTVFFVDNLITVLNKYDHN 216

[Close]

BLAST of CsGy3G029880 vs. TAIR 10
Match: AT3G11420.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 27/35 (77.14%), Postives = 29/35 (82.86%), Query Frame = 0


Query: 124 AFELGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 159
           ++ L L NVRWFVMGDDDTVFF ENLV VL KYDH
Sbjct: 175 SYRLNLPNVRWFVMGDDDTVFFTENLVKVLSKYDH 209

[Close]

BLAST of CsGy3G029880 vs. TAIR 10
Match: AT5G41460.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 61.6 bits (148), Expect = 6.7e-10
Identity = 26/34 (76.47%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 126 ELGLENVRWFVMGDDDTVFFVENLVNVLGKYDHN 160
           +LGL++VRWFVMGDDDTVF  ENL+ VL KYDHN
Sbjct: 198 KLGLKDVRWFVMGDDDTVFVAENLIRVLRKYDHN 231

[Close]

BLAST of CsGy3G029880 vs. TAIR 10
Match: AT1G07850.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-09
Identity = 25/32 (78.12%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 127 LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 159
           LG + VRWFVMGDDDTVF V+N+VNVL KYDH
Sbjct: 209 LGKKGVRWFVMGDDDTVFVVDNVVNVLSKYDH 240

[Close]

BLAST of CsGy3G029880 vs. TAIR 10
Match: AT4G23490.1 (Protein of unknown function (DUF604) )

HSP 1 Score: 58.2 bits (139), Expect = 7.4e-09
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 127 LGLENVRWFVMGDDDTVFFVENLVNVLGKYDH 159
           LG +NVRWFVMGDDDTVF ++NL+ VL KYDH
Sbjct: 200 LGPKNVRWFVMGDDDTVFVIDNLIRVLRKYDH 231

The following BLAST results are available for this feature:

BLAST of CsGy3G029880 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G029880 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651001.1	3.46e-109	99.35	hypothetical protein Csa_002597, partial [Cucumis sativus]	[more]
KAA0044111.1	8.41e-16	51.52	hypothetical protein E6C27_scaffold236G004630 [Cucumis melo var. makuwa]	[more]
EXB36740.1	1.28e-13	43.80	hypothetical protein L484_016992 [Morus notabilis]	[more]
XP_028119309.1	4.16e-13	86.84	uncharacterized protein LOC114316830 [Camellia sinensis]	[more]
KAE9448716.1	6.40e-13	84.21	hypothetical protein C3L33_19403, partial [Rhododendron williamsianum]	[more]

BLAST of CsGy3G029880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA38	3.86e-109	99.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733990 PE=4 SV=1	[more]
A0A5A7TRA4	4.07e-16	51.52	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
W9R1T8	6.22e-14	43.80	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_016992 PE=4 SV=1	[more]
A0A6A4KLQ5	3.10e-13	84.21	Uncharacterized protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3...	[more]
A0A7J7HP17	3.79e-13	86.84	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_006592 PE=4 SV=1	[more]

BLAST of CsGy3G029880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37730.1	4.2e-12	73.68	Protein of unknown function (DUF604)	[more]
AT3G11420.1	2.3e-10	77.14	Protein of unknown function (DUF604)	[more]
AT5G41460.1	6.7e-10	76.47	Protein of unknown function (DUF604)	[more]
AT1G07850.1	4.3e-09	78.13	Protein of unknown function (DUF604)	[more]
AT4G23490.1	7.4e-09	75.00	Protein of unknown function (DUF604)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.550.50		coord: 112..162 e-value: 6.7E-10 score: 40.6
None	No IPR available	PANTHER	PTHR10811	FRINGE-RELATED	coord: 123..159
None	No IPR available	PANTHER	PTHR10811:SF13	GLYCOSYLTRANSFERASE	coord: 123..159

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G029880.2	CsGy3G029880.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045927	positive regulation of growth
cellular_component	GO:0016021	integral component of membrane