CsGy3G028500 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G028500
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	RING-type domain-containing protein
Location	Gy14Chr3: 29432360 .. 29432680 (-)
RNA-Seq Expression	CsGy3G028500
Synteny	CsGy3G028500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTTCGATGTGCACATGAGAGTGATACTGGCGGCTTTATTATGTGCACTCATTGGAGCGGTTGGAGTAAACTCTATTTTACGCTGCGTTTTGCGGTGTAGGTATAGCTTTGAGTTGGAGAGAGCACAGGAGGGCGCTGGCACACCGGGGCTTAAGAAGCGAGAAATCGCTTTGATTTCGATTAAGGTTTATGGAACTGATGCAAATATTAAGAACACAGATTGCGCAATTTGCCTTGCCCAGTTTAAGGTGGGTGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGA

mRNA sequence

ATGAATTTCGATGTGCACATGAGAGTGATACTGGCGGCTTTATTATGTGCACTCATTGGAGCGGTTGGAGTAAACTCTATTTTACGCTGCGTTTTGCGGTGTAGGTATAGCTTTGAGTTGGAGAGAGCACAGGAGGGCGCTGGCACACCGGGGCTTAAGAAGCGAGAAATCGCTTTGATTTCGATTAAGGTTTATGGAACTGATGCAAATATTAAGAACACAGATTGCGCAATTTGCCTTGCCCAGTTTAAGGTGGGTGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGA

Coding sequence (CDS)

ATGAATTTCGATGTGCACATGAGAGTGATACTGGCGGCTTTATTATGTGCACTCATTGGAGCGGTTGGAGTAAACTCTATTTTACGCTGCGTTTTGCGGTGTAGGTATAGCTTTGAGTTGGAGAGAGCACAGGAGGGCGCTGGCACACCGGGGCTTAAGAAGCGAGAAATCGCTTTGATTTCGATTAAGGTTTATGGAACTGATGCAAATATTAAGAACACAGATTGCGCAATTTGCCTTGCCCAGTTTAAGGTGGGTGACAAGCTTAGAATGTTGCCCATTTGCAACCATGGATTCCACCTCACATGCATTGATACTTGA

Protein sequence

MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALISIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT*

Homology

[Close]

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot
Match: Q9LZV8 (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-24
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGT----PGLKKRE 60
           MNFD +M +ILAALLCALI A+G+NSILRC +RC +      A   AGT     GLKKRE
Sbjct: 28  MNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAA---AGTVADRAGLKKRE 87

Query: 61  IALISIKVYGT-DANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           +    +  YG+ +  I  T+CAICL +F  G+++R+LP CNH FH++CIDT
Sbjct: 88  LKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDT 135

[Close]

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot
Match: Q9FLC6 (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.5e-23
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRC--RYSFELERAQEGAG-TPGLKKREIA 61
           + D HM +ILAALLCALI A+G+NS+LRCVLRC  R++   +     A    G+KKR + 
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 62  LISIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           +I +  Y  +  +K T+C ICL  F  G+ +R+LP CNHGFH+ CIDT
Sbjct: 96  VIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 143

[Close]

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.6e-20
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 3   FDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSF----ELERAQEG-------AGTPG 62
           FD +M +ILAALLCALI A+ +NS LRCVLR    F    ++  A          A   G
Sbjct: 29  FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATG 88

Query: 63  LKKREIALISIKVYGTD-ANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           LKK+ +  I + +YG+   ++K T+C ICL  F+ G+K+R+LP CNHGFH+ CIDT
Sbjct: 89  LKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 144

[Close]

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot
Match: Q6NQG7 (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEG----AGTPGLKKREI 61
           NFD ++ ++L+ LLCAL+ ++G+NSI+RC LRC      E   +         G+K++ +
Sbjct: 51  NFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKAL 110

Query: 62  ALISIKVYGTDANIK--NTDCAICLAQFKVGDKLRMLPICNHGFHLTCID 106
                  Y T+ N+   +T+CAICL++F   +++++LP C+HGFH+ CID
Sbjct: 111 KSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCID 160

[Close]

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-15
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELER------AQEGAGTPGLKKR 61
           N   ++ ++L+ L+C +I  +G++ I+RC LR    F +        +  G+   G+KK+
Sbjct: 53  NLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKK 112

Query: 62  EIALISIKVYGTDANIKNTD--CAICLAQFKVGDKLRMLPICNHGFHLTCID 106
            + +  +  Y  + N+   D  C ICL+ F  G++LR+LP CNHGFH+ CID
Sbjct: 113 ALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCID 164

[Close]

BLAST of CsGy3G028500 vs. NCBI nr
Match: KGN58695.1 (hypothetical protein Csa_000746 [Cucumis sativus])

HSP 1 Score: 215 bits (547), Expect = 2.61e-70
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI 60
           MNFDVHM VILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI
Sbjct: 1   MNFDVHMGVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI 60

Query: 61  SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT
Sbjct: 61  SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106

[Close]

BLAST of CsGy3G028500 vs. NCBI nr
Match: XP_031737578.1 (RING-H2 finger protein ATL74-like [Cucumis sativus])

HSP 1 Score: 201 bits (511), Expect = 6.69e-65
Identity = 99/100 (99.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 7   MRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALISIKVYG 66
           M VILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALISIKVYG
Sbjct: 1   MGVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALISIKVYG 60

Query: 67  TDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           TDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT
Sbjct: 61  TDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 100

[Close]

BLAST of CsGy3G028500 vs. NCBI nr
Match: XP_008443568.1 (PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo])

HSP 1 Score: 181 bits (458), Expect = 6.26e-56
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALIS 61
           NFDVHM + LAALLC LIGAVGVNSI+RC LRCRYSFE ERA+E A   GLKK+E+ALI 
Sbjct: 28  NFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQGLKKQELALIP 87

Query: 62  IKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           I VYG+DANIK+TDCAICLAQF+VGDKLRMLPICNHGFHLTCIDT
Sbjct: 88  IGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDT 132

[Close]

BLAST of CsGy3G028500 vs. NCBI nr
Match: KAA0044224.1 (RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (446), Expect = 3.48e-52
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALIS 61
           NFDVHM + LAALLC LIGAVGVNSI+RC LR RYSFE ERA+E A   GLKK+E+ALI 
Sbjct: 28  NFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRRRYSFETERAEEDASAQGLKKQELALIP 87

Query: 62  IKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           I VYG+DANIK+TDCAICLAQF+VGDKLRMLPICNHGFHLTCIDT
Sbjct: 88  IGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDT 132

[Close]

BLAST of CsGy3G028500 vs. NCBI nr
Match: XP_023540727.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139 bits (349), Expect = 4.73e-39
Identity = 71/110 (64.55%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAG---TPGLKKREI 60
           MN D HM VILAALL ALIGA+GVNS++RCVL   + F  ER +E A      GLKKRE+
Sbjct: 30  MNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFRTERPEETAARLAAIGLKKREL 89

Query: 61  ALISIKVYGTD-ANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           + I + VYG+D A IK TDCAICL +F+VGDK+RMLPICNHGFH+ CIDT
Sbjct: 90  SQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICNHGFHVRCIDT 139

[Close]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL
Match: A0A0A0L9Q6 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728120 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 1.26e-70
Identity = 105/106 (99.06%), Postives = 105/106 (99.06%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI 60
           MNFDVHM VILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI
Sbjct: 1   MNFDVHMGVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALI 60

Query: 61  SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT
Sbjct: 61  SIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106

[Close]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL
Match: A0A1S3B8C4 (RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 SV=1)

HSP 1 Score: 181 bits (458), Expect = 3.03e-56
Identity = 86/105 (81.90%), Postives = 94/105 (89.52%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALIS 61
           NFDVHM + LAALLC LIGAVGVNSI+RC LRCRYSFE ERA+E A   GLKK+E+ALI 
Sbjct: 28  NFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRCRYSFETERAEEDASAQGLKKQELALIP 87

Query: 62  IKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           I VYG+DANIK+TDCAICLAQF+VGDKLRMLPICNHGFHLTCIDT
Sbjct: 88  IGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDT 132

[Close]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL
Match: A0A5A7TM08 (RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005850 PE=4 SV=1)

HSP 1 Score: 176 bits (446), Expect = 1.68e-52
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGTPGLKKREIALIS 61
           NFDVHM + LAALLC LIGAVGVNSI+RC LR RYSFE ERA+E A   GLKK+E+ALI 
Sbjct: 28  NFDVHMTLTLAALLCLLIGAVGVNSIVRCFLRRRYSFETERAEEDASAQGLKKQELALIP 87

Query: 62  IKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           I VYG+DANIK+TDCAICLAQF+VGDKLRMLPICNHGFHLTCIDT
Sbjct: 88  IGVYGSDANIKSTDCAICLAQFEVGDKLRMLPICNHGFHLTCIDT 132

[Close]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL
Match: A0A6J1I6E6 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE=4 SV=1)

HSP 1 Score: 137 bits (346), Expect = 7.32e-39
Identity = 70/110 (63.64%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAG---TPGLKKREI 60
           MN D HM VILAALL ALIGA+GVN+++RCVL   + F  ER +E A      GLKKRE+
Sbjct: 30  MNLDAHMVVILAALLFALIGALGVNALVRCVLSLGFRFRTERPEETAARLAAIGLKKREL 89

Query: 61  ALISIKVYGTD-ANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           + I + VYG+D A IK TDCAICL +F+VGDK+RMLPICNHGFH+ CIDT
Sbjct: 90  SQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPICNHGFHVRCIDT 139

[Close]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL
Match: A0A6J1EVU3 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 PE=4 SV=1)

HSP 1 Score: 132 bits (331), Expect = 1.33e-36
Identity = 70/110 (63.64%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAG---TPGLKKREI 60
           MN D HM VILAALL ALIGA+GVNS++RCVL   + F  ER +E A      GLKKRE+
Sbjct: 30  MNLDAHMVVILAALLFALIGALGVNSLVRCVLSLGFRFR-ERPEETAARLAAIGLKKREL 89

Query: 61  ALISIKVYGTD-ANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 106
           + I + VYG+D A IK TDCAICL +F+VGDK+RMLP CNHGFH+ CIDT
Sbjct: 90  SQIPVGVYGSDCAKIKGTDCAICLGEFEVGDKVRMLPNCNHGFHVRCIDT 138

[Close]

BLAST of CsGy3G028500 vs. TAIR 10
Match: AT5G01880.1 (RING/U-box superfamily protein )

HSP 1 Score: 113.6 bits (283), Expect = 9.7e-26
Identity = 58/111 (52.25%), Postives = 76/111 (68.47%), Query Frame = 0


Query: 1   MNFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEGAGT----PGLKKRE 60
           MNFD +M +ILAALLCALI A+G+NSILRC +RC +      A   AGT     GLKKRE
Sbjct: 28  MNFDANMVIILAALLCALILALGLNSILRCAMRCGFGLSSSAA---AGTVADRAGLKKRE 87

Query: 61  IALISIKVYGT-DANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           +    +  YG+ +  I  T+CAICL +F  G+++R+LP CNH FH++CIDT
Sbjct: 88  LKKFPVAEYGSGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDT 135

[Close]

BLAST of CsGy3G028500 vs. TAIR 10
Match: AT5G05280.1 (RING/U-box superfamily protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-24
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRC--RYSFELERAQEGAG-TPGLKKREIA 61
           + D HM +ILAALLCALI A+G+NS+LRCVLRC  R++   +     A    G+KKR + 
Sbjct: 36  SMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRALK 95

Query: 62  LISIKVYGTDANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           +I +  Y  +  +K T+C ICL  F  G+ +R+LP CNHGFH+ CIDT
Sbjct: 96  VIPVDSYSPELKMKATECLICLGDFVEGETVRVLPKCNHGFHVKCIDT 143

[Close]

BLAST of CsGy3G028500 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-21
Identity = 54/116 (46.55%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 3   FDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSF----ELERAQEG-------AGTPG 62
           FD +M +ILAALLCALI A+ +NS LRCVLR    F    ++  A          A   G
Sbjct: 29  FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATG 88

Query: 63  LKKREIALISIKVYGTD-ANIKNTDCAICLAQFKVGDKLRMLPICNHGFHLTCIDT 107
           LKK+ +  I + +YG+   ++K T+C ICL  F+ G+K+R+LP CNHGFH+ CIDT
Sbjct: 89  LKKQALKQIPVGLYGSGIIDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDT 144

[Close]

BLAST of CsGy3G028500 vs. TAIR 10
Match: AT1G49230.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 8.8e-19
Identity = 41/110 (37.27%), Postives = 69/110 (62.73%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELERAQEG----AGTPGLKKREI 61
           NFD ++ ++L+ LLCAL+ ++G+NSI+RC LRC      E   +         G+K++ +
Sbjct: 51  NFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLVPSEAGGDNYPVRLTNTGVKRKAL 110

Query: 62  ALISIKVYGTDANIK--NTDCAICLAQFKVGDKLRMLPICNHGFHLTCID 106
                  Y T+ N+   +T+CAICL++F   +++++LP C+HGFH+ CID
Sbjct: 111 KSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCID 160

[Close]

BLAST of CsGy3G028500 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 2.4e-16
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 2   NFDVHMRVILAALLCALIGAVGVNSILRCVLRCRYSFELER------AQEGAGTPGLKKR 61
           N   ++ ++L+ L+C +I  +G++ I+RC LR    F +        +  G+   G+KK+
Sbjct: 53  NLSGNVMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKK 112

Query: 62  EIALISIKVYGTDANIKNTD--CAICLAQFKVGDKLRMLPICNHGFHLTCID 106
            + +  +  Y  + N+   D  C ICL+ F  G++LR+LP CNHGFH+ CID
Sbjct: 113 ALRMFPVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCID 164

The following BLAST results are available for this feature:

BLAST of CsGy3G028500 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZV8	1.4e-24	52.25	RING-H2 finger protein ATL74 OS=Arabidopsis thaliana OX=3702 GN=ATL74 PE=2 SV=1	[more]
Q9FLC6	1.5e-23	49.07	RING-H2 finger protein ATL73 OS=Arabidopsis thaliana OX=3702 GN=ATL73 PE=2 SV=1	[more]
Q9SG96	1.6e-20	46.55	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q6NQG7	1.2e-17	37.27	RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1	[more]
P0C034	3.4e-15	33.93	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]

BLAST of CsGy3G028500 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58695.1	2.61e-70	99.06	hypothetical protein Csa_000746 [Cucumis sativus]	[more]
XP_031737578.1	6.69e-65	99.00	RING-H2 finger protein ATL74-like [Cucumis sativus]	[more]
XP_008443568.1	6.26e-56	81.90	PREDICTED: RING-H2 finger protein ATL74-like [Cucumis melo]	[more]
KAA0044224.1	3.48e-52	80.95	RING-H2 finger protein ATL74-like [Cucumis melo var. makuwa]	[more]
XP_023540727.1	4.73e-39	64.55	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G028500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9Q6	1.26e-70	99.06	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G728120 P...	[more]
A0A1S3B8C4	3.03e-56	81.90	RING-H2 finger protein ATL74-like OS=Cucumis melo OX=3656 GN=LOC103487125 PE=4 S...	[more]
A0A5A7TM08	1.68e-52	80.95	RING-H2 finger protein ATL74-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1I6E6	7.32e-39	63.64	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111470053 PE...	[more]
A0A6J1EVU3	1.33e-36	63.64	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111437007 ...	[more]

BLAST of CsGy3G028500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G01880.1	9.7e-26	52.25	RING/U-box superfamily protein	[more]
AT5G05280.1	1.1e-24	49.07	RING/U-box superfamily protein	[more]
AT3G10910.1	1.1e-21	46.55	RING/U-box superfamily protein	[more]
AT1G49230.1	8.8e-19	37.27	RING/U-box superfamily protein	[more]
AT1G49220.1	2.4e-16	33.93	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..106 e-value: 1.2E-11 score: 45.7
IPR001841	Zinc finger, RING-type	PFAM	PF17123	zf-RING_11	coord: 75..104 e-value: 2.2E-12 score: 46.5
None	No IPR available	PANTHER	PTHR45798	RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED	coord: 1..106
None	No IPR available	PANTHER	PTHR45798:SF44	RING-H2 FINGER PROTEIN ATL74	coord: 1..106
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 70..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G028500.2	CsGy3G028500.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane