CsGy3G028460 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G028460
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionPentatricopeptide repeat-containing protein
LocationGy14Chr3: 29420756 .. 29420965 (+)
RNA-Seq ExpressionCsGy3G028460
SyntenyCsGy3G028460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGCTTGTGTAAGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGA

mRNA sequence

ATGGATGGCTTGTGTAAGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGA

Coding sequence (CDS)

ATGGATGGCTTGTGTAAGGTCGGCAGATCAGACGAGGCAATGGAATTGCTCAATGAAGCGGAGGAAAATGGTTTAAAACCAAGTGTTGTCACTTTCAACACCCTCTTCAATGGATTCACCTTCATCAGAGCGTTATGCAGGACATCCTTGAAAGAAAAGGATGTATTGGAAGATGCCCATCAACTGTTTAAGAAAATGAAGGCCTGCTGA

Protein sequence

MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAHQLFKKMKAC*
Homology
BLAST of CsGy3G028460 vs. ExPASy Swiss-Prot
Match: Q9M9X9 (Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g06710 PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.1e-06
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI 43
           +DGLCKVG++DEA +L+   EE G +P+VVT+  + +GF  I
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI 792

BLAST of CsGy3G028460 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.1e-06
Identity = 28/68 (41.18%), Postives = 42/68 (61.76%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           ++G C  G+ DEAM+LL+     GLKP+ VT++TL NG+      C+ S      +EDA 
Sbjct: 518 INGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGY------CKISR-----MEDAL 574

Query: 61  QLFKKMKA 69
            LFK+M++
Sbjct: 578 VLFKEMES 574

BLAST of CsGy3G028460 vs. ExPASy Swiss-Prot
Match: Q9C8T7 (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX=3702 GN=At1g63330 PE=2 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-05
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG------LC-----SKRLLQEAY 492

Query: 61  QLFKKMK 68
            L KKMK
Sbjct: 497 ALLKKMK 492

BLAST of CsGy3G028460 vs. ExPASy Swiss-Prot
Match: Q9LUR2 (Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g16710 PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-05
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           + G+CK+G+ ++A +L       G+KP+V+T+ T+ +GF      CR  L     + +A 
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF------CRRGL-----IHEAD 495

Query: 61  QLFKKMK 68
            LFKKMK
Sbjct: 500 SLFKKMK 495

BLAST of CsGy3G028460 vs. ExPASy Swiss-Prot
Match: Q9LVQ5 (Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX=3702 GN=At5g55840 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           +DGLCK G  DEA+ LLNE  ++G+ P +VT++ L NGF
Sbjct: 410 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 448

BLAST of CsGy3G028460 vs. NCBI nr
Match: KAE8650970.1 (hypothetical protein Csa_000996 [Cucumis sativus])

HSP 1 Score: 142 bits (359), Expect = 8.88e-43
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0

Query: 1  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
          MDGLC+VGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH
Sbjct: 1  MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60

Query: 61 QLFKKMKAC 69
          QLFKKMKAC
Sbjct: 61 QLFKKMKAC 69

BLAST of CsGy3G028460 vs. NCBI nr
Match: XP_022157329.1 (pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 9.65e-22
Identity = 59/131 (45.04%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELLNEAEENGL+PSVVTFNTLFNG+                     
Sbjct: 243 MDGLCKVGRSDEAMELLNEAEENGLEPSVVTFNTLFNGYCKEGRPLDGIHVLKKMKQMNC 302

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR S KEKD+L
Sbjct: 303 MPDRISYTTLLHGLIKWGKIRTALRTYKEMVSSGHSVEEKMMNTFMRALCRRSWKEKDLL 362

BLAST of CsGy3G028460 vs. NCBI nr
Match: XP_023528121.1 (pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.1 bits (235), Expect = 8.24e-21
Identity = 57/131 (43.51%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                     
Sbjct: 250 MDGLCKVGRSDEAMELLSEAEQNGVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNC 309

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR S KEKD+L
Sbjct: 310 TPDRISYSTLLQGLIKWGKIRTALRTYKEMVSSGHSIEEKMMNTFMRALCRRSWKEKDLL 369

BLAST of CsGy3G028460 vs. NCBI nr
Match: KAG7017186.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 95.1 bits (235), Expect = 8.24e-21
Identity = 57/131 (43.51%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                     
Sbjct: 250 MDGLCKVGRSDEAMELLSEAEQNGVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNC 309

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR S KEKD+L
Sbjct: 310 TPDRISYSTLLQGLIKWGKIRTALRTYKEMVSSGHSIEEKMMNTFMRALCRRSWKEKDLL 369

BLAST of CsGy3G028460 vs. NCBI nr
Match: KAG6580429.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.0 bits (232), Expect = 2.14e-20
Identity = 56/131 (42.75%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                     
Sbjct: 250 MDGLCKVGRSDEAMELLSEAEQNGVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNC 309

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR + KEKD+L
Sbjct: 310 TPDRISYSTLLQGLIKWGKIRTALRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLL 369

BLAST of CsGy3G028460 vs. ExPASy TrEMBL
Match: A0A0A0LF40 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728080 PE=4 SV=1)

HSP 1 Score: 127 bits (320), Expect = 9.77e-37
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
          MDGLC+VGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH
Sbjct: 1  MDGLCRVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60

Query: 61 QL 62
          QL
Sbjct: 61 QL 62

BLAST of CsGy3G028460 vs. ExPASy TrEMBL
Match: A0A6J1DW66 (pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charantia OX=3673 GN=LOC111024057 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 4.67e-22
Identity = 59/131 (45.04%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELLNEAEENGL+PSVVTFNTLFNG+                     
Sbjct: 243 MDGLCKVGRSDEAMELLNEAEENGLEPSVVTFNTLFNGYCKEGRPLDGIHVLKKMKQMNC 302

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR S KEKD+L
Sbjct: 303 MPDRISYTTLLHGLIKWGKIRTALRTYKEMVSSGHSVEEKMMNTFMRALCRRSWKEKDLL 362

BLAST of CsGy3G028460 vs. ExPASy TrEMBL
Match: A0A6J1F9P1 (pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata OX=3662 GN=LOC111442091 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.03e-20
Identity = 56/131 (42.75%), Postives = 65/131 (49.62%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELL+EAE+NG+KPSVVTFNTLFNG+                     
Sbjct: 250 MDGLCKVGRSDEAMELLSEAEQNGVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNC 309

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR + KEKD+L
Sbjct: 310 TPDRISYSTLLQGLIKWGKIRTALRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLL 369

BLAST of CsGy3G028460 vs. ExPASy TrEMBL
Match: A0A6J1J506 (pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111481420 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.68e-20
Identity = 56/131 (42.75%), Postives = 64/131 (48.85%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF--------------------- 60
           MDGLCKVGRSDEAMELL+EAE NG+KPSVVTFNTLFNG+                     
Sbjct: 250 MDGLCKVGRSDEAMELLSEAEGNGVKPSVVTFNTLFNGYCKEGRPLDGIRVLKKMKQMNC 309

Query: 61  -------------------------------------------TFIRALCRTSLKEKDVL 67
                                                      TF+RALCR + KEKD+L
Sbjct: 310 TPDRISYSTLLHGLIKWGKIRTALRTYKEMVSSGHSIEEKMMNTFMRALCRRTWKEKDLL 369

BLAST of CsGy3G028460 vs. ExPASy TrEMBL
Match: A0A1S3B7W4 (pentatricopeptide repeat-containing protein At5g39710-like OS=Cucumis melo OX=3656 GN=LOC103487124 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.04e-16
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 39
           MDGLCKVGRSDEA+EL NEAEENGLKPSVVTFNTLFNG+
Sbjct: 165 MDGLCKVGRSDEALELPNEAEENGLKPSVVTFNTLFNGY 203

BLAST of CsGy3G028460 vs. TAIR 10
Match: AT1G06710.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 50.8 bits (120), Expect = 5.1e-07
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFI 43
           +DGLCKVG++DEA +L+   EE G +P+VVT+  + +GF  I
Sbjct: 751 IDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMI 792

BLAST of CsGy3G028460 vs. TAIR 10
Match: AT1G63330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+
Sbjct: 437 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG------LC-----SKRLLQEAY 492

Query: 61  QLFKKMK 68
            L KKMK
Sbjct: 497 ALLKKMK 492

BLAST of CsGy3G028460 vs. TAIR 10
Match: AT1G62590.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 25/67 (37.31%), Postives = 40/67 (59.70%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           ++G+CK G+ D+  +L       G+KP+VVT+NT+ +G      LC      K +L++A+
Sbjct: 512 IEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISG------LC-----SKRLLQEAY 567

Query: 61  QLFKKMK 68
            L KKMK
Sbjct: 572 ALLKKMK 567

BLAST of CsGy3G028460 vs. TAIR 10
Match: AT3G16710.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 24/67 (35.82%), Postives = 39/67 (58.21%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGFTFIRALCRTSLKEKDVLEDAH 60
           + G+CK+G+ ++A +L       G+KP+V+T+ T+ +GF      CR  L     + +A 
Sbjct: 440 IQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGF------CRRGL-----IHEAD 495

Query: 61  QLFKKMK 68
            LFKKMK
Sbjct: 500 SLFKKMK 495

BLAST of CsGy3G028460 vs. TAIR 10
Match: AT5G55840.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.1e-06
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0

Query: 1   MDGLCKVGRSDEAMELLNEAEENGLKPSVVTFNTLFNGF 40
           +DGLCK G  DEA+ LLNE  ++G+ P +VT++ L NGF
Sbjct: 450 IDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGF 488

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M9X97.1e-0650.00Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidop... [more]
Q76C997.1e-0641.18Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV... [more]
Q9C8T71.6e-0537.31Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX... [more]
Q9LUR21.6e-0535.82Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial OS... [more]
Q9LVQ51.6e-0553.85Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
KAE8650970.18.88e-4398.55hypothetical protein Csa_000996 [Cucumis sativus][more]
XP_022157329.19.65e-2245.04pentatricopeptide repeat-containing protein At1g09900-like [Momordica charantia][more]
XP_023528121.18.24e-2143.51pentatricopeptide repeat-containing protein At5g39710-like [Cucurbita pepo subsp... [more]
KAG7017186.18.24e-2143.51Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
KAG6580429.12.14e-2042.75Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
A0A0A0LF409.77e-3798.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728080 PE=4 SV=1[more]
A0A6J1DW664.67e-2245.04pentatricopeptide repeat-containing protein At1g09900-like OS=Momordica charanti... [more]
A0A6J1F9P11.03e-2042.75pentatricopeptide repeat-containing protein At1g09900-like OS=Cucurbita moschata... [more]
A0A6J1J5063.68e-2042.75pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like OS=Cuc... [more]
A0A1S3B7W44.04e-1692.31pentatricopeptide repeat-containing protein At5g39710-like OS=Cucumis melo OX=36... [more]
Match NameE-valueIdentityDescription
AT1G06710.15.1e-0750.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G63330.11.1e-0637.31Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G62590.11.1e-0637.31pentatricopeptide (PPR) repeat-containing protein [more]
AT3G16710.11.1e-0635.82Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G55840.11.1e-0653.85Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 1..29
e-value: 5.2E-7
score: 27.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..39
e-value: 1.3E-11
score: 44.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..27
score: 10.314641
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 1..69
e-value: 3.2E-13
score: 51.4
NoneNo IPR availablePANTHERPTHR47942:SF36PPR CONTAINING PLANT-LIKE PROTEINcoord: 1..39
NoneNo IPR availablePANTHERPTHR47942TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..39

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G028460.2CsGy3G028460.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding