CsGy3G028320 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G028320
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	50S ribosomal protein L17
Location	Gy14Chr3: 29339981 .. 29343151 (+)
RNA-Seq Expression	CsGy3G028320
Synteny	CsGy3G028320

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCCCCCAAAAGAAGTTGCAATATATGTAAGTTTCTACTGAAGGCCTCCCCTCCCAGACGACCTAACTATTTCTTATCTTGTTATCCATACACCACGAGGACACCCAAACAATGTCAATGGCGATTACAACGGCAACGGCAACTGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCGTCTGTGGGATCAGAAATTTGTACTCGGACTCGCGTTAGCTTTCCGTTGTCCAATGCTCGAGTCAGTCGAAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTTTATGCCCCTTAAACCCACTCATTTCTACTGGCTCAGCAGGTAACTCCATACTCTCTCACTTGTTACCTAGGCCGCCCCTTTTAATTCGATTTCTCTTCCGCTAATGCCGCGCTTATTCTGCTTCTAATGGCCGATTGATTTGTGACCTATGACTTGAATGGTTCTGCAATTATTTACTATTTGTTTTATTTTTTAAAAATCGTGATTTCTACTTGAATTGATACGTCCCTTTTAGGCTTTTTCTCGGCAGCTTTCTGGTACAAATACTGTACAAGTCTCCTGCTAATTTTGGTAACAGTTGGAAATCTCAAGTTAATATTCGCAGGAAATGAAACGTTGTTCCCCGTTTGTTCCACTATTGAGTAACAATCGGAGATGAAACGTGAAAATATTTCTTTCGGGGGGTTTGTTTGTCTTCCTCAAACTCTGTTATCGAAAATTAGGTTTACAAACCTCCCATTTCTTTTTGTTTTTTGTTTTTGAAAATTAAGGCTATTTTATTCTCATTTCTTATCTTAATTTGCATATTTCTTACCTTAATTTGCATATTTCTTGGGTACAATAATTTCAATAATGAAACAAATTTTTAAAAGCTACTTTTTAGTTTTCAAAATTGAACATGGTTTCTGAAACCATGAGTAAAAAGTAGATAATAAAGAAAAAAATTTGGAGGTGGAAGTAACGTTTAGTGGTCTAATTAAAAAAAATGAAATGGGCCATGTTTACAGGATTTGGTTGATGTTTTGATTGTATTTCTAGCAATAAGCCCGTTGAAGTTGGTGCATTTTCAGGATTTCTATCATCAAGAAACTTAATATAAAATGGAAAAAAATAGGAATGCTTAGGATAGCAGGAAGTTCTAATGAATTTATTATTTCATTATATATGGCTGAGTATATAAATAATACACTAGGGGATGGGGAAAACATTGACTACCTTATAAGAGAGAGCCATGTAGTACGACAAATAAAAAACAATAACAAGTGTAAAAAATCAAACACAATTTGGAAGTTTATATATTTCCATCCCTGCTGCATTCTATATGTGAAACTCTTCTCAATTACAGGATTGAACTGACTGGTTTTACATGGGCCGTCATAGTTCATAATTATTTCAAAGGGGTTTCGTTTGTGGCTTCATGGGCACCTTTACATTTGGTCTCTGGTTGATGGTTTGACTGTATTCCTAGGCCTGAAATATGATATATAAATATGCCCATTGAAGTTGGTGTATTTTCAGGGTTTCTACCATTAAGAGAGTGTGAACTTACATATATTTTAGAATAGTAGAAAGCTCAAATGAAAGGGATGGAAAATAGGAATGTTTAGAATAGTAGAAAGCTCAAATGAATTATTTCATTCGATAAGGCCGAGTGAGTGTATATATTACGCAAGGGGATGCGGAGAATATTACCCATACCTTATGAGAGAGAGCCACAAATCAGAAAACAGTAACAAATATAGCAAATCAAACAACACCATTTGCAGGCAAATTCAAACGTTTTTCGGGTACCAGATTTAGTAGTTCCATTACCATATTCAGACATGAATTGAAACCTGGGCTCTTGGGCACTTTAATTTTATTCTCAACATATTGCGTTTGAATTACCGATGGTCAATATCATGTATGGCTTTATACTAGGTGGATACAAACCTTACATATCAGATTAAAGTATTGTGGGCATGATATAAATGCTCTAGCATATTGGTCTCATAGAGTTTGTTATACTTTTACATATCCATTAATGAGATAAGTTAAGGTTTCAACATTAAATTTTTAGTTAATATGAATTTCTAGATGCATTTGTAATAGAAATGGCCCGATGCATTTGAGGTTCTGAATGTCAGGCCTTAGTGGCTCAGAATTGTAGAAGTTTATTCACGTTGAATATTGTAGAGAGTTAGGACGTTAGCTTGATTAAATGATGTATGTCATATGCTACCCCATACACCAACAATTATTATGAAAATGATATTTTGTCATTTGGTATATAAATCTAGTCAAATAACAATTTTTTTTTTTTAAATCATAAGCTAATAGAGCATAGAATTCCTGAGATTTATACAACTTTCTGTAATTTCTTTTCTGTGTACTAATTGTTATAGAACCTGTAATGCGCTTGTCCATCATGCAGATTACAATGGCTTTGAACATAACTTCGAAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGGGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTGGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAATGGTGTGGAGATTTAATTCTTTTTGAGAGGTTGCCACATGTATGATTATAAACCTTGTATTAATATTTGCATACATATACATACATGATGGACATAAATATTTTAAGTAAATTTGATCTACATTATGTGGGGTTTAGCTTTTCTTCCCAAACTAATATACATCAGTGGTCGGCTTGGAGGCTCGAGTGACCTTCTGCATTTTAACCTCATCAACGATTCAATATTATCCTCTCTGCACTCTGTTGTCGGTTATCCTCCTATAAATCTACCTCTATTTTCTCTCC

mRNA sequence

GCCCCCCAAAAGAAGTTGCAATATATGTAAGTTTCTACTGAAGGCCTCCCCTCCCAGACGACCTAACTATTTCTTATCTTGTTATCCATACACCACGAGGACACCCAAACAATGTCAATGGCGATTACAACGGCAACGGCAACTGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCGTCTGTGGGATCAGAAATTTGTACTCGGACTCGCGTTAGCTTTCCGTTGTCCAATGCTCGAGTCAGTCGAAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTTTATGCCCCTTAAACCCACTCATTTCTACTGGCTCAGCAGATTACAATGGCTTTGAACATAACTTCGAAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGGGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTGGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGAATATTGGCCAGTTATTTTTGTATCGGCGGAGTCAACCAATTCTAGTAATGGTGTGGAGATTTAATTCTTTTTGAGAGGTTGCCACATGTATGATTATAAACCTTGTATTAATATTTGCATACATATACATACATGATGGACATAAATATTTTAAGTAAATTTGATCTACATTATGTGGGGTTTAGCTTTTCTTCCCAAACTAATATACATCAGTGGTCGGCTTGGAGGCTCGAGTGACCTTCTGCATTTTAACCTCATCAACGATTCAATATTATCCTCTCTGCACTCTGTTGTCGGTTATCCTCCTATAAATCTACCTCTATTTTCTCTCC

Coding sequence (CDS)

ATGTCAATGGCGATTACAACGGCAACGGCAACTGCAAATGGCCGATGGAGCTTTACAACGTTGAGGTCAGCGCTACCGTCTGTGGGATCAGAAATTTGTACTCGGACTCGCGTTAGCTTTCCGTTGTCCAATGCTCGAGTCAGTCGAAGAACCTGCAGCAAACCAATCGCCTCCTTTTCGGGTTTATGCCCCTTAAACCCACTCATTTCTACTGGCTCAGCAGATTACAATGGCTTTGAACATAACTTCGAAATTGTTGATAATGGTTACCGAGTTTTTGCCATGAGACATGGCAAGCGGGTACCTAAGCTAAATAGGCCTCCTGACCAACGACGGGCACTATTGCGAGGGCTCACCACCCAACTCCTTAAGCATGGTCGGATCAAAACCACCAGAACAAGAGCAAGTGCTATGCGTAAGTATGTTGACAAAATGATTACATTGGCAAAGGATGGTTCCTTGCATAAAAGGAGACAAGCTTTAGGCTTCATCTACGAAAAGCAGATTGTTCATGCATTATTTGCAGAAGTCCAAGATAGGTATGGGGAGAGAAACGGTGGATATACCAGAATTATAAGAACTCTGCCTAGGCGAGGGGACAACGCGCCTATGGCATACATTGAACTTGTCTGA

Protein sequence

MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFSGLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV*

Homology

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BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot
Match: Q9M385 (50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 1.8e-76
Identity = 152/214 (71.03%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNAR---VSRRTCSKP-I 60
           MSMA+ T T + +  WS ++L+SALPS  S       +  P S++R     R   S P +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S G  D+  FE+ F+IVD G R++AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

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BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot
Match: O80363 (50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 PE=2 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 5.7e-75
Identity = 145/204 (71.08%), Postives = 167/204 (81.86%), Query Frame = 0


Query: 10  ATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARV---SRRTCSKPIASFSGLCPLN 69
           A+A+  WS + L+SALPS+     +  R S   S +R+     ++ S+ + SF GL PL+
Sbjct: 2   ASASTTWSMSCLKSALPSIQPISSSSLRFSCGPSPSRLRICKPKSSSRLLHSFVGLAPLH 61

Query: 70  PLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHG 129
           PL+S  S D   FEH+F ++DNG RVFAMRHG++VPKLNRPPDQRRALLRGLTTQLLKHG
Sbjct: 62  PLLSLSSQDSTSFEHSFTVIDNGGRVFAMRHGRKVPKLNRPPDQRRALLRGLTTQLLKHG 121

Query: 130 RIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNG 189
           RIKTT+ RA A+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEV DRYGERNG
Sbjct: 122 RIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNG 181

Query: 190 GYTRIIRTLPRRGDNAPMAYIELV 211
           GYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 182 GYTRIIRTLPRRGDNAPMAYIELV 205

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BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot
Match: P82194 (50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 PE=1 SV=2)

HSP 1 Score: 223.8 bits (569), Expect = 1.8e-57
Identity = 108/126 (85.71%), Postives = 120/126 (95.24%), Query Frame = 0


Query: 85  IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDK 144
           ++DNG R FAM+HG+++ +L+RP DQRRALLRGLTTQLLKHGRIKTTR +ASAMRKYVDK
Sbjct: 1   MIDNGGRFFAMKHGRKIHRLSRPADQRRALLRGLTTQLLKHGRIKTTRAKASAMRKYVDK 60

Query: 145 MITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPM 204
           MITLAK+GSLHKRRQALGFIYEKQIVHALFAEV +RYG+RNGGYTRIIRTLPRRGDNAPM
Sbjct: 61  MITLAKEGSLHKRRQALGFIYEKQIVHALFAEVPERYGDRNGGYTRIIRTLPRRGDNAPM 120

Query: 205 AYIELV 211
           AYIELV
Sbjct: 121 AYIELV 126

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BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot
Match: B1XJI3 (50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) OX=32049 GN=rplQ PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 5.4e-41
Identity = 79/116 (68.10%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 154
           MRHG RVP+L RP DQR+ALLR LTTQL++HG++KTT+ RA A+R  VD+MITLAKDGSL
Sbjct: 1   MRHGCRVPELGRPADQRKALLRALTTQLIRHGQVKTTKARAKAVRSEVDRMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
             RR+ALG++Y+K +VHALFA+ +DRYG+R GGY+R++RT+ RRGDNA MA IELV
Sbjct: 61  AARRRALGYMYDKDLVHALFAQAKDRYGDRQGGYSRVVRTVRRRGDNAEMAIIELV 116

[Close]

BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot
Match: B0C429 (50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=rplQ PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.6e-40
Identity = 82/115 (71.30%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 95  MRHGKRVPKLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSL 154
           MRH  RV KL +P DQR+ALLR L+TQL++HGR+ TT+ RA A+R  V+KMITLAKDGSL
Sbjct: 1   MRHRCRVHKLGKPADQRKALLRSLSTQLIRHGRVTTTKARAKAVRSQVEKMITLAKDGSL 60

Query: 155 HKRRQALGFIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIEL 210
             RRQALG+IY+KQ+VHALF +V DRYG+RNGGYTRIIRT+ RRGDNA MA IEL
Sbjct: 61  ASRRQALGYIYDKQLVHALFDQVADRYGDRNGGYTRIIRTIRRRGDNAEMAIIEL 115

[Close]

BLAST of CsGy3G028320 vs. NCBI nr
Match: XP_004137669.1 (50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypothetical protein Csa_001558 [Cucumis sativus])

HSP 1 Score: 416 bits (1068), Expect = 2.31e-146
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of CsGy3G028320 vs. NCBI nr
Match: XP_008442307.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo])

HSP 1 Score: 396 bits (1018), Expect = 9.02e-139
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATA  NGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MAMAITTATA--NGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYN FEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CsGy3G028320 vs. NCBI nr
Match: XP_038906261.1 (50S ribosomal protein L17, chloroplastic [Benincasa hispida])

HSP 1 Score: 381 bits (979), Expect = 7.95e-133
Identity = 195/210 (92.86%), Postives = 200/210 (95.24%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATA  NGRWSFTTLRSALPSV SEICT +RVSFPLSN RV+ RTCSKPIASFS
Sbjct: 1   MAMAITTATA--NGRWSFTTLRSALPSVRSEICTPSRVSFPLSNVRVNSRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG  DYNGFEHNF+IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLPDYNGFEHNFKIVDSGSRFFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CsGy3G028320 vs. NCBI nr
Match: XP_022971252.1 (50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ribosomal protein L17, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 363 bits (931), Expect = 1.77e-125
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CsGy3G028320 vs. NCBI nr
Match: XP_023540903.1 (50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360 bits (924), Expect = 2.06e-124
Identity = 182/210 (86.67%), Postives = 194/210 (92.38%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATATAN RWSF+++RSALPSV   + T +RVSFP SN R S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN +E NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSYEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL
Match: A0A0A0L9N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1)

HSP 1 Score: 416 bits (1068), Expect = 1.12e-146
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210

[Close]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL
Match: A0A1S3B652 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1)

HSP 1 Score: 396 bits (1018), Expect = 4.37e-139
Identity = 203/210 (96.67%), Postives = 205/210 (97.62%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATA  NGRWSFTTLRSALPSVGSE CTRTRVSFPLSNARVSRRTCSKPIASFS
Sbjct: 1   MAMAITTATA--NGRWSFTTLRSALPSVGSENCTRTRVSFPLSNARVSRRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTGSADYN FEHNF+IVDNG RVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGSADYNDFEHNFKIVDNGSRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL
Match: A0A6J1I1G7 (50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111470028 PE=3 SV=1)

HSP 1 Score: 363 bits (931), Expect = 8.55e-126
Identity = 184/210 (87.62%), Postives = 195/210 (92.86%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATATAN RWSF+++RSALPSV   + T +RVSFP SN RVS RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPSVEVGVRTPSRVSFPSSNGRVSGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL
Match: A0A6J1GDC0 (50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452972 PE=3 SV=1)

HSP 1 Score: 359 bits (921), Expect = 2.86e-124
Identity = 182/210 (86.67%), Postives = 193/210 (91.90%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MAITTATATAN RWSF+++RSALP V   + T +RVSFP SN R S RTCSK IASFS
Sbjct: 1   MAMAITTATATANSRWSFSSMRSALPFVEVGVRTPSRVSFPSSNGRASGRTCSKQIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLIS GS+DYN FE NF IVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISIGSSDYNSFEQNFTIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASA+RKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEV+DR
Sbjct: 121 QLLKHGRIKTTRARASAVRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVKDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRI+RTLPRRGDNAPMA+IELV
Sbjct: 181 YGERNGGYTRILRTLPRRGDNAPMAFIELV 210

[Close]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL
Match: A0A6J1DXR7 (50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111024059 PE=3 SV=1)

HSP 1 Score: 349 bits (896), Expect = 1.72e-120
Identity = 179/210 (85.24%), Postives = 188/210 (89.52%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNARVSRRTCSKPIASFS 60
           M+MA TTA    N RWS T LR+ALPSVG EI T  RVSFP +  RVS RTCSKPIASFS
Sbjct: 1   MAMAFTTAAT--NSRWSLTALRAALPSVGVEIHTPARVSFPSATGRVSCRTCSKPIASFS 60

Query: 61  GLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLRGLTT 120
           GLCPLNPLISTG +D++ FEHNF IVD+G R FAMRHGKRVPKLNRPPDQRRALLRGLTT
Sbjct: 61  GLCPLNPLISTGLSDFDSFEHNFTIVDSGCRYFAMRHGKRVPKLNRPPDQRRALLRGLTT 120

Query: 121 QLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVQDR 180
           QLLKHGRIKTTR RASAMRKYVDKMITLAK+GSLHKRRQALGF+YEKQIVHALFAEVQDR
Sbjct: 121 QLLKHGRIKTTRARASAMRKYVDKMITLAKEGSLHKRRQALGFVYEKQIVHALFAEVQDR 180

Query: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 210
           YGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 181 YGERNGGYTRIIRTLPRRGDNAPMAYIELV 208

[Close]

BLAST of CsGy3G028320 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 287.0 bits (733), Expect = 1.3e-77
Identity = 152/214 (71.03%), Postives = 173/214 (80.84%), Query Frame = 0


Query: 1   MSMAITTATATANGRWSFTTLRSALPSVGSEICTRTRVSFPLSNAR---VSRRTCSKP-I 60
           MSMA+ T T + +  WS ++L+SALPS  S       +  P S++R     R   S P +
Sbjct: 5   MSMAMATPTDSVSRVWSMSSLKSALPSTAS-------LRLPSSSSRRPVTLRLPISSPSL 64

Query: 61  ASFSGLCPLNPLISTGSADYNGFEHNFEIVDNGYRVFAMRHGKRVPKLNRPPDQRRALLR 120
            SFSGL P+NPL+S G  D+  FE+ F+IVD G R++AMRHG+RVPKLNRPPDQR+ALLR
Sbjct: 65  PSFSGLSPVNPLLSIGLPDWQSFENGFKIVDGGGRIYAMRHGRRVPKLNRPPDQRKALLR 124

Query: 121 GLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAE 180
           GLTTQLLKHGRIKTTR RASAMRK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAE
Sbjct: 125 GLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAE 184

Query: 181 VQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           V DRYGERNGGYTRIIRTLPRRGDNAPMAYIELV
Sbjct: 185 VPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

[Close]

BLAST of CsGy3G028320 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 109.8 bits (273), Expect = 2.8e-24
Identity = 53/108 (49.07%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL+KH RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFI 113

[Close]

BLAST of CsGy3G028320 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 107.5 bits (267), Expect = 1.4e-23
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 103 KLNRPPDQRRALLRGLTTQLLKHGRIKTTRTRASAMRKYVDKMITLAKDGSLHKRRQALG 162
           KL RP   R ++LR + +QL++H RI+TT T+A  +R+  D MI L K+GSL   R+A G
Sbjct: 6   KLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAARRAAG 65

Query: 163 FIYEKQIVHALFAEVQDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211
           F+    ++H +F E+  RY +R GGYTR++RT  R GD APMAYIE +
Sbjct: 66  FVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFI 113

The following BLAST results are available for this feature:

BLAST of CsGy3G028320 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M385	1.8e-76	71.03	50S ribosomal protein L17, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL1...	[more]
O80363	5.7e-75	71.08	50S ribosomal protein L17, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL17 P...	[more]
P82194	1.8e-57	85.71	50S ribosomal protein L17, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL17 P...	[more]
B1XJI3	5.4e-41	68.10	50S ribosomal protein L17 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / P...	[more]
B0C429	1.6e-40	71.30	50S ribosomal protein L17 OS=Acaryochloris marina (strain MBIC 11017) OX=329726 ...	[more]

BLAST of CsGy3G028320 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137669.1	2.31e-146	100.00	50S ribosomal protein L17, chloroplastic [Cucumis sativus] >KGN58675.1 hypotheti...	[more]
XP_008442307.1	9.02e-139	96.67	PREDICTED: 50S ribosomal protein L17 [Cucumis melo]	[more]
XP_038906261.1	7.95e-133	92.86	50S ribosomal protein L17, chloroplastic [Benincasa hispida]	[more]
XP_022971252.1	1.77e-125	87.62	50S ribosomal protein L17, chloroplastic [Cucurbita maxima] >KAG7027848.1 50S ri...	[more]
XP_023540903.1	2.06e-124	86.67	50S ribosomal protein L17, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy3G028320 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9N9	1.12e-146	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G727930 PE=3 SV=1	[more]
A0A1S3B652	4.37e-139	96.67	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103486218 PE=3 SV=1	[more]
A0A6J1I1G7	8.55e-126	87.62	50S ribosomal protein L17, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]
A0A6J1GDC0	2.86e-124	86.67	50S ribosomal protein L17, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1DXR7	1.72e-120	85.24	50S ribosomal protein L17, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11...	[more]

BLAST of CsGy3G028320 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54210.1	1.3e-77	71.03	Ribosomal protein L17 family protein	[more]
AT5G09770.1	2.8e-24	49.07	Ribosomal protein L17 family protein	[more]
AT5G64650.1	1.4e-23	48.15	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 85..210 e-value: 2.1E-50 score: 172.0
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 95..210
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 101..210 e-value: 8.0E-43 score: 143.3
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 114..210 e-value: 1.7E-34 score: 118.6
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 46..210
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 99..210 score: 26.132162
None	No IPR available	PANTHER	PTHR14413:SF23	SUBFAMILY NOT NAMED	coord: 46..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G028320.1	CsGy3G028320.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome