CsGy3G027840 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G027840
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3
Location	Gy14Chr3: 28896305 .. 28898436 (-)
RNA-Seq Expression	CsGy3G027840
Synteny	CsGy3G027840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTATGAAGCAAGTCCCAGAAGGAGGAAGACGTGTATAAATGCAAAATTATGAGAGTTGTAGCACAAGTAAAGAGGATGGTAGCTAACTTAGATACAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCATCTCTCACAAAGAGTGAAGAGACAAAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGGTAAAACACAATCTCCTACTTGTCATCTTTCAGATTTCTGCAGACATTCCCTCTTCTATTCATACAATTCTCTTCCATCTAAAGATTTTTTTTTTTTTTCATTTTTCTTTTTTAAATGAAGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGAAAATGGACCGTTGATTACATGCTTTCCCTGCAAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGGTAATTTCAATACTTTTCTCTCTCCAAAACTCTATTTTATGTATAACAACATTAATGAACGCACCTTGAATCTAACTCCAACAACATCTAACGATGGATTTGATCCATCTCCAATAGAATCTCAGTGTGGACTATTATTGGAGAGACCAAGATGGGTAAAGATATATTCTCCAACTTGTTTCTTTTTCTTTTTTCATTTTTTGTGGAGGAGCCTGCTGAAGAATCCGTTTCTCAGCTCAAGAGAATAGACATCGAACAATCACTTTTTAAGCAATTTAAAGAATTAAAACAGCACAAAATGAGAGCAATTCTACACAAAATGCTCTATTCGCTAACTATATCACTAACAGTTTCCCTTTGTTTTTACCAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGGTCACTGTTTAAATAATAAAAAAACGATTGAATCACATATGGCTTATTCTTAGTCATCCGTATCACATCTATCCATGAAGTTTCAATTTATAACACTCCAACCAGTGTTCTAACACACAATTATCGTAATCAAACAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAAGTTTTTGCATTTCTTCACTTCAACTACTTAGAAGTATGACAACCATCTTAAATTTAACAGGTAATTTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGTGAGAAGTTAGCAAACAGAATTAGCCTACTTATCAATAACTATTAATATAAAAAAAAACACTGCCAAGATTCAATTGGAATAAGTTAACAAAACAGCCTACCTCTTCCAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTCCGAAAACATGACTGCCCATTGATAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACACCTGCAACTAAAATTGGTTTTGCCTGATCACCTATATTTCTCCTTTAAGTAGAAGAAGACTAATAAGAAATTATCCCTTTGACCAAACCATTCAACATAAGTTCAAAAATACATCCCGTAGTATATCAATCCCCCACCCCCCGACCCTAAAAAAAAAAATCATATATCGGCAGCAAGGAAATTTCCAGATAGTGACACCTGCATGCATGTAG

mRNA sequence

TGCTATGAAGCAAGTCCCAGAAGGAGGAAGACGTGTATAAATGCAAAATTATGAGAGTTGTAGCACAAGTAAAGAGGATGGTAGCTAACTTAGATACAAATAAAGATATATTTCCGAAGAGAAATTGGGGCCTCACATTGTATAGATAAGGTTCCAATTCCAATTACTTGCTTTATTCCACGTATTGTCATCTCTCACAAAGAGTGAAGAGACAAAAATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGAAAATGGACCGTTGATTACATGCTTTCCCTGCAAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATTTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAGACAAGAGGTGGTCCAGGCTTTTGGAGCTTAGAAAATCTAATTCATAGATAACAAGCAATATGTATATATATTGATGGTTGCTCATCTAGGCTTCCGAAAACATGACTGCCCATTGATAAAATTAAATTGTTTATTAGTTTCTAAGTCAATATCATAATGGAAAAGTGGTTGACACCTGCAACTAAAATTGGTTTTGCCTGATCACCTATATTTCTCCTTTAAGTAGAAGAAGACTAATAAGAAATTATCCCTTTGACCAAACCATTCAACATAAGTTCAAAAATACATCCCGTAGTATATCAATCCCCCACCCCCCGACCCTAAAAAAAAAAATCATATATCGGCAGCAAGGAAATTTCCAGATAGTGACACCTGCATGCATGTAG

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTTACAACAGCAAGAAATATCAACTCCATTTCAAGTGCATTCAACAAAGCTGCACCTAAATCTTCAACTCAAACATTCAAAATCAAAGCTTCTTCAAAGAGAAACGACATCTCCTTGAGAAGAAGCAACAAAACAACAAGGCGTCTAATTACAATATCAACAGCTGGAAGCAGATGGCAAGGAAAATGGACCGTTGATTACATGCTTTCCCTGCAAGACCTCAACTTAGAAGACTTGGTAGAAGATGAAAACAATAATGCACATGTCTTCATCAATCTCTGTATTGAGAAGCATGCAAGTTTCGGGTTCACTGTGGATGGAAGGATCAACACATCATTCACTCGAAAGTGTTGTGCCTGTTCTTCGCCATACTGCAGAGAGATCAATGCAAATTTTAATGTATTGGTTCTGTCATCAAACAGAGCCAACAGGGAAATTCATCTTCCAGATATTGGAGGCGACGATCCTTCGGTAATTTATGTTAAACCCGGACTTGAAGCCGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACCAAGGACACTTGCTCAGAGATGTGTGAGAAATCTCAACCCACAGTGCAATGTAAGTGGTCAAGTGTCACTGACTCAAGCTTCCACTTGCAATTAACGTTGGGACTAATTGAGAAATGTTCATTGCAGATATTGGTGCACAGAACGCTGCATCTATAG

Protein sequence

MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTVQCKWSSVTDSSFHLQLTLGLIEKCSLQILVHRTLHL*

Homology

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BLAST of CsGy3G027840 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.7e-46
Identity = 91/157 (57.96%), Postives = 117/157 (74.52%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTV 206
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTL 205

[Close]

BLAST of CsGy3G027840 vs. NCBI nr
Match: XP_011651803.2 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucumis sativus] >KAE8650945.1 hypothetical protein Csa_002331 [Cucumis sativus])

HSP 1 Score: 402 bits (1034), Expect = 2.60e-140
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206
           RDTIRLTTSTKDTCSEMCEKSQPTVQ
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206

[Close]

BLAST of CsGy3G027840 vs. NCBI nr
Match: XP_031738565.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [Cucumis sativus] >KAE8650911.1 hypothetical protein Csa_001037 [Cucumis sativus])

HSP 1 Score: 386 bits (992), Expect = 6.29e-134
Identity = 199/206 (96.60%), Postives = 202/206 (98.06%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISLR SNKTTRRLITIS
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLR-SNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           TAGSRWQGKWT DY+LSL+DLNLEDLVEDEN NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TAGSRWQGKWTCDYLLSLRDLNLEDLVEDENKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206
           RDTIRLTTSTKDTCSEMCEKSQPTVQ
Sbjct: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 205

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BLAST of CsGy3G027840 vs. NCBI nr
Match: XP_008461873.1 (PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF177 domain-containing protein [Cucumis melo var. makuwa] >TYK04199.1 DUF177 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 374 bits (960), Expect = 4.88e-129
Identity = 191/206 (92.72%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206
           RDTIRLTTSTKDTCSE CEKSQPTVQ
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQ 206

[Close]

BLAST of CsGy3G027840 vs. NCBI nr
Match: XP_022983269.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 [Cucurbita maxima])

HSP 1 Score: 366 bits (939), Expect = 1.86e-125
Identity = 192/225 (85.33%), Postives = 204/225 (90.67%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVA-AGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQCKWSSVTDSSFHLQLTLG 224
           VRDTIRLTTSTKDTCSE+CEKSQP+VQCKWSS   SSFH Q  +G
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQCKWSSC-HSSFHTQSEVG 223

[Close]

BLAST of CsGy3G027840 vs. NCBI nr
Match: XP_023527887.1 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023527888.1 large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365 bits (938), Expect = 2.64e-125
Identity = 192/225 (85.33%), Postives = 203/225 (90.22%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAA-PKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNKAA PK +TQ FKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVA-AGNVNSISSSFNKAAAPKFATQAFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSYDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQCKWSSVTDSSFHLQLTLG 224
           VRDTIRLTTSTKDTCSE+CEKSQP+VQCKWSS   SSFH Q  +G
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQCKWSSC-HSSFHTQSKVG 223

[Close]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL
Match: A0A5D3C1F8 (DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00270 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 2.36e-129
Identity = 191/206 (92.72%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206
           RDTIRLTTSTKDTCSE CEKSQPTVQ
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQ 206

[Close]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL
Match: A0A1S3CFK7 (uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=4 SV=1)

HSP 1 Score: 374 bits (960), Expect = 2.36e-129
Identity = 191/206 (92.72%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60
           MAEAG LVTT RNINSISS+FNK APKS TQTFKIKASSKRNDISLRRSNKTTRRLITIS
Sbjct: 1   MAEAGRLVTTTRNINSISSSFNKPAPKSLTQTFKIKASSKRNDISLRRSNKTTRRLITIS 60

Query: 61  TAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSF 120
           T+GSRWQGKWT DY+LSL+DLNLEDLVEDE+ NAHVFINLCIEKHASFGFTVDGRINTSF
Sbjct: 61  TSGSRWQGKWTCDYLLSLRDLNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGRINTSF 120

Query: 121 TRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180
           TRKCC CS PYCREI ANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV
Sbjct: 121 TRKCCTCSLPYCREIKANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLV 180

Query: 181 RDTIRLTTSTKDTCSEMCEKSQPTVQ 206
           RDTIRLTTSTKDTCSE CEKSQPTVQ
Sbjct: 181 RDTIRLTTSTKDTCSESCEKSQPTVQ 206

[Close]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL
Match: A0A0A0L9P4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1)

HSP 1 Score: 370 bits (949), Expect = 4.27e-127
Identity = 198/244 (81.15%), Postives = 202/244 (82.79%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAPKSSTQTFKIKASSKRNDISLRRSN---------- 60
           MAEAGHLVTTARNINSISS+FNKAAPK STQTFKIKASSKRNDISL + N          
Sbjct: 1   MAEAGHLVTTARNINSISSSFNKAAPKPSTQTFKIKASSKRNDISLVKHNLLLVIFQISA 60

Query: 61  ----------------------------KTTRRLITISTAGSRWQGKWTVDYMLSLQDLN 120
                                       KTTRRLITISTAGSRWQGKWT DY+LSL+DLN
Sbjct: 61  DIPSSIHTFLFHLMIFSFSSLNEAQIRNKTTRRLITISTAGSRWQGKWTCDYLLSLRDLN 120

Query: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL 180
           LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL
Sbjct: 121 LEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTSFTRKCCACSSPYCREINANFNVL 180

Query: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ 206
           VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ
Sbjct: 181 VLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQ 240

[Close]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL
Match: A0A6J1J6V3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 366 bits (939), Expect = 9.00e-126
Identity = 192/225 (85.33%), Postives = 204/225 (90.67%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNK-AAPKSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNK AAPK +TQTFKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVA-AGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQGKW+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           FTRKCC CSSPYCREINANFNVLVLSSNRA RE  LP+IGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FTRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQCKWSSVTDSSFHLQLTLG 224
           VRDTIRLTTSTKDTCSE+CEKSQP+VQCKWSS   SSFH Q  +G
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQCKWSSC-HSSFHTQSEVG 223

[Close]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL
Match: A0A6J1F2W8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 358 bits (920), Expect = 2.12e-123
Identity = 188/221 (85.07%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 1   MAEAGHLVTTARNINSISSAFNKAAP-KSSTQTFKIKASSKRNDISLRRSNKTTRRLITI 60
           MAEAGHLV  A N+NSISS+FNKAA  K +TQ FKIKASSKRNDISLRRS+K  RRLITI
Sbjct: 1   MAEAGHLVAAA-NVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITI 60

Query: 61  STAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASFGFTVDGRINTS 120
           STAGS WQG+W+ DY+LSLQD NLEDLVEDE+ NAHVFINLCIEKHASFGFTVDG+INTS
Sbjct: 61  STAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTS 120

Query: 121 FTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYVKPGLEADLDSL 180
           F RKCC CSSPYCREINANFNVLVLSSNRA RE  LPDIGGDDPSVIYVKPGLEADLDSL
Sbjct: 121 FIRKCCTCSSPYCREINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSL 180

Query: 181 VRDTIRLTTSTKDTCSEMCEKSQPTVQCKWSSVTDSSFHLQ 220
           VRDTIRLTTSTKDTCSE+CEKSQP+VQCKWSS   SSFH Q
Sbjct: 181 VRDTIRLTTSTKDTCSELCEKSQPSVQCKWSSC-HSSFHTQ 219

[Close]

BLAST of CsGy3G027840 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-47
Identity = 91/157 (57.96%), Postives = 117/157 (74.52%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 168

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTV 206
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+
Sbjct: 169 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTL 205

[Close]

BLAST of CsGy3G027840 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-47
Identity = 91/157 (57.96%), Postives = 117/157 (74.52%), Query Frame = 0


Query: 49  SNKTTRRLITISTAGSRWQGKWTVDYMLSLQDLNLEDLVEDENNNAHVFINLCIEKHASF 108
           S+KT +RLIT+S +  +W G W   Y +SL+DL L+DLVED   N+ V ++L +++HAS 
Sbjct: 46  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 105

Query: 109 GFTVDGRINTSFTRKCCACSSPYCREINANFNVLVLSSNRANREIHLPDIGGDDPSVIYV 168
           G +VDGRI TS  RKC  CSS Y R I+ +F V +L S+R NR   LP+IGGDDPSVIYV
Sbjct: 106 GLSVDGRIMTSIARKCSICSSLYPRLIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYV 165

Query: 169 KPGLEADLDSLVRDTIRLTTSTKDTCSEMCEKSQPTV 206
           +PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+PT+
Sbjct: 166 RPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTL 202

The following BLAST results are available for this feature:

BLAST of CsGy3G027840 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	1.7e-46	57.96	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of CsGy3G027840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651803.2	2.60e-140	100.00	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_031738565.1	6.29e-134	96.60	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic [...	[more]
XP_008461873.1	4.88e-129	92.72	PREDICTED: uncharacterized protein LOC103500366 [Cucumis melo] >KAA0052757.1 DUF...	[more]
XP_022983269.1	1.86e-125	85.33	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
XP_023527887.1	2.64e-125	85.33	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CsGy3G027840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1F8	2.36e-129	92.72	DUF177 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CFK7	2.36e-129	92.72	uncharacterized protein LOC103500366 OS=Cucumis melo OX=3656 GN=LOC103500366 PE=...	[more]
A0A0A0L9P4	4.27e-127	81.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G656510 PE=4 SV=1	[more]
A0A6J1J6V3	9.00e-126	85.33	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F2W8	2.12e-123	85.07	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CsGy3G027840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	1.2e-47	57.96	Protein of unknown function (DUF177)	[more]
AT3G19800.2	1.2e-47	57.96	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003772	Large ribosomal RNA subunit accumulation protein YceD	PFAM	PF02620	YceD	coord: 112..210 e-value: 1.7E-12 score: 47.5
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..207

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G027840.2	CsGy3G027840.2	mRNA