CsGy3G027450 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G027450
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11
Location	Gy14Chr3: 28547217 .. 28551954 (-)
RNA-Seq Expression	CsGy3G027450
Synteny	CsGy3G027450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTTCCTCTCCATTTTCCTCTTTCAAGAAGGCAGCTTTTCTTCTTCCATTACTGCAAAACCCAAAGCTCAAAGAGCAGCTTCACAAAGGACACCAAAAGCCATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGTAGCTTCACAACCTCTACTTCTTTCTTTCTATTCAAACCAATTTTCACAGTTTCTAACTTTTTTTTCCTTCCTATCTAGGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGTAATGACCCTTTTGAAAAATTTTAGATTACTGCTTGATATTTGTTTAAGTGGAGTTAGTTATCGGGTTTTGTTTTTTTCGACGAACAGGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGGTCAGTTCATTTTCCACTTGTTTTTGGGTTTTGTAATTTGAAATAGGGCTTTAAGGGGGCTTTTGAGATTCTGGGTTTTATTACCCTGTTCTGTTTCTTAGTGCTTGTTTTGATTGGATGAAGGATTTTAGGATTCTGCTTAAGTTTAAGCTGTTGGATTTAGTAGTAGCCGGTTTTATGTTCAAATTATTTCATTCATATTTCATCCCCGATGAGGGTTAATATTTCACTTGTTGAATCCTGTGCTTATCGATGACCTGACATGGAAGAGTATTAAACATGTGTTTAATCAAGCTTTTGAGTTCAGGAGTGATTTAACAAATATTCTCATTTCAACCTATGTTCTTTTTCTTGGTTTGTAATCTATTGAAGTTAGAAATCACTTGGCTTTGGTTCAAACGGGCTGAAGCTCGAGCTAAAAAAGCTATGTAACTTGGTTTACCATTGTCCTTAGGACCACCATGAGGATAATTGTTATTTGTTAGTAATAAGCCATTGAGCTTGTCAGTAGGAGTTTATCTTAAATAGAGTGAGTGGGGAGGAAGGAGGCAAAGATTTAGTTCGCATAGGCTTGGCCGCTTGGGCGAGAGTATTCAAGAGGGGAGGTCCCAAATACGTTGAGTATTAGGGGAGTCATTGTGGTTCATCACCCTTTATATATATTTCAATATCATTTTAGTACTTTGGTTAACTTTTTGAGGGAGACGAGGATAACTGTTTTCAAAAGACCATGTCCCATAACTTAACTGTGCCTGTTCTTCTATTGAGAACATGGTTCAATGGGGTTTCAACAAGATTATGTTGACCGACTTTTCTTATAGTGAGAAGTAGCTTCTTAAATTCTTTCAATTAATTAGAAAATGCTTGTGGTTCTGGTGCAAAAATGTTATTTCGTATATCTCAAATTTTAGATACGGTTTTTCATGTTGTTTGGAACCATTAGGATATCAAAATCTGGAAAATGAGACATTTGAAGTTGATGAGCTTCTTGGTTTTTTATGATTGTAGTGTTTTTTCTTGCCTCAAGTTAATCTAACCTATCTTACTGGATTGGCTACTTACAATCTTCGTACGAAGAGAATGTTTGGTACCCTATACTGGTCCTACTAAATATTACCTACGGATGGAATTGATCAGTCTCTGATCTGTTGCATGTCATACGTACAACAAAGGAACCTGAAGTGTCGTTTGAGCAAGGAGACAAGACGATGAATTTAACACGTCCAGCCCATCTACCTTACATGTTTGATGGGGTTCTTTATCGTATGATGGATAAATGATTTAATGTGGCCCTATAACCATTTTGTTCGCCTGTTTCTTACCTCCGTATAAACATGCATTTACGTTCTTGGACCCATATTTTACTGTTTCAAGATATTTTGTTTAACTTTAACTTAATGTGATTTTATATGTCTTTTGGTTTCATTATAAATTTTCAGTGAACTACCAACAGGTTGGTTTTTCGCCTTCTTGATATTTTAGTACAAAAGTGCACCTGTATATGGTACACCATGAACAGAAGTTGCATTTGAATGATTTCTCATAAACATCCAGAGAATGGTTTTTTTTTTTCTTTTTCATTCTAAATACTCATCCGGACATCTTTTTCCTGTTCCTGTTGGTTTGATATGTATATATTGGGGTTTTTCTTCCACAAACTAATTATTACTACTCTTCAGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGTTTGAATTTGCCACTCTGTCTTTAAACTTAGTTTCAAAATCATGCAATTTAGCTAGTAAACATTCTCGGTGAAAAGTAAAGTGCTGTTGAAATCGATACCAAATCTCTTATCGAAAAAGGGAAAATAATTGATAGCAAGTCAAAAGAGGTTCGGAGTGATAGTGAGTTTGGATGAATTTGAAGAAAATGCTATTAAGTGAAGACACTTTTTCTATAAGCCCTTTTGAAAATAGCACTAATTAATTACTTCTCTCAAAAGAACTTAGTGTTTAGAAATACTTTTAATATATTCTTTATCTAATCAGACTCAAACTTTAAGGAGTGATTTTAACGAGTTAAAAACACTTTTCACCCTATTGAAAGTCATCTCATATTCATTGTACCCATTTGCAAAAATTGATGGTATTAAGGGAGGGAGGTAACTTCATTTGGTTAAAGGTCATGACGGTAACCTGTTTAAAATTTAATATACAATTAGTTTTCTTGACAGTGAATTGTAGTAGCTTGGGTGGTTGTCTATGAGAGACTGAGAATATAATTTACCTGGACACTCACAAATATAATTTTCTTTTTTTTCTTATGATATACATGAGTGTTCAAGTTAGCTTATATGCACCTCGACTAATCTCACAGGACAACCCGATTGGCTACAACGTTTGGGTGTCAAATAAACTTGGAGGAAATTAATTCCTAGGTAGGTGGCCATTCTGGATTGAACCCATGACCTCTTAATTTGTTATTAAGACTATGGGCCAACCTATGATGGTTCACTCACAAATATAAAAATTAAAATTAAAATAAAAGCTCAACTAAATGAAGTCTATTGTGGACGACAGTGGAAGTGGAGGTGGAGTGATGAGGTTACTAAAATTTCAACTGAGTCTGCATAACAAGTCTTGTTTGAGTTTTGACTGCATTTGGTTTTTGAGAAATGTGCCTGTTCTCTCATTCTCTCTCTACAATGGTTTTCATCTTTCCCAAAAACAAGTTTTCTATAAATTACTTTTTTTAGTTTTCAAAACTTGTTTTGGATTAGGAAAACACTCTTTAAAAGTAGACTACTTAACCAATAAACCAATATGTGGAATCGGTGCTAAAATCCCAAAATTGATATCAAACGTGACCTTAACAAATGATGCTTGGATTCTCATTCCCACATTTCCAATTCCATCCTTTTGCCCCCTGAATGTCATCAATTGGCCATAGGTACTTAACAGTTTGATATTTAGATCAAGAATGATTACTGATGTTTACATAATTATGATACTGTAAATAATGATATGGACTGTCTTCACTCTTACAAGTCAATCAACATCTGTGCTTTAAAACACTGTAAATCTCTCGACAACCTCAAAACCTGATTGATTGGCTTGTTGGGAGTGCAACTTCGGACTTCTCGAAGTTAGGGACATTAAACTGAGGCATTAAAGCTTCGAAACTTCTGCAACCTTATTGAGCAGGATCTGTCTTCTATGTTGTTCAACGGTATCCTTGAGTTATGAAATGATTTGATACTTCTTCCCCGCAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGATTTGATTTTGGAAAACTTGTTGGAGCTCAATTCAAAATGCAGGTACAAGACAATGAGTTACTGACATGAAATGAATTTCCAAGAACTTTGTTTTGTTTTCTTTTAAGGTTTCTGAAACCATCTTGTAACTTGCTCAACTTTTGTTGTATGACAATGCTTCTAAATTATATATATTATTTGTCTTAGCACACTTCATGTTTGTGTTGATAGATATCCTTTTGAAAGTTTCAGTTTGATAGGTGTACTTACTCAAATTTAGTAATATTACGTTTTGATGGGTGTTAGATCTCTAATATATCAAGCAGGTGATTTTTTTTCTTCCTTTCATTTCAGGTAGTAGAAAGACATAATTATACCTTATTTGAATAGAATGATGGTGTTTTGTTGTCTTTTTACCAAGAAGGTAAAATAATCCTTGAGGCTTCAACCAACTTTGATACTCTTTTCATTTTGCCACATTCAACATTTTCGTTGCTCTTAATATTTGGGGAAAAAAGAACTTGAGTGTTTAAGGAGAAATAAAAATGATTGTGTTTATTGGGTTAGTACATATATCTATATGTGTGTGCACTTGCTTTGAAAGCTATTTTGAGTGGTTGGTGAATTGATTGTCTAAAAAATCTAATGTCATTCACACGTCTTTCTTTCTCTACGTCTTCTTCTTCTCCAATAGGACCAACACGATGGGTCCACGAGCTGCTTTGTGGAGACTAACTTTGGTGAAGAGAGAAATTGAGTGAGAGTGAGTGCAGTGATTTGTTAGTGAGAAAGAGAATGAGAGCGAGACTATGATTCTTTTCCACATGTATTCATATATTTTGGTTATTTCACCATAGTTTTACGTCAACTATGGTCATTTGACATAGGTCATCCATTGGGCCAATTGTGGTTGCTTTCTTAAACACTC

mRNA sequence

GTTCTTCCTCTCCATTTTCCTCTTTCAAGAAGGCAGCTTTTCTTCTTCCATTACTGCAAAACCCAAAGCTCAAAGAGCAGCTTCACAAAGGACACCAAAAGCCATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGATTTGATTTTGGAAAACTTGTTGGAGCTCAATTCAAAATGCAGGTAGTAGAAAGACATAATTATACCTTATTTGAATAGAATGATGGTGTTTTGTTGTCTTTTTACCAAGAAGGACCAACACGATGGGTCCACGAGCTGCTTTGTGGAGACTAACTTTGGTGAAGAGAGAAATTGAGTGAGAGTGAGTGCAGTGATTTGTTAGTGAGAAAGAGAATGAGAGCGAGACTATGATTCTTTTCCACATGTATTCATATATTTTGGTTATTTCACCATAGTTTTACGTCAACTATGGTCATTTGACATAGGTCATCCATTGGGCCAATTGTGGTTGCTTTCTTAAACACTC

Coding sequence (CDS)

ATGAATGCTCCCGACCGATACGAGCGCTTCGTCGTTCCAGAGGGTACCAAAAAGGTCTCATACGAGAGAGACACGAAAATCATTAATGCGGCGTCATTTACTATTGAAAGAGAGGAACATACCATTGGAAACATCTTGCGGATGCAGCTGCATAGAGATGAAAATGTGTTGTTTGCTGGATATAAGCTTCCTCACCCTTTGCAATATAAAATTATTGTCCGGATCCATACTACTAGCCAATCGTCGCCGATGCAAGCATATAATCAAGCCATCAATGATTTGGACAAGGAGCTTGATCATTTGAAAAATGCATTTGAGGCTGAGTTTGCTAAGTTCTCAAGGGACTATTGA

Protein sequence

MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY*

Homology

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BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.1e-55
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FEAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot
Match: Q86JJ5 (DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=44689 GN=polr2j PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 53/111 (47.75%), Postives = 84/111 (75.68%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDR+E FV+P+G KKV+  RDTKI NA+ FTI +E+HTIGN++RMQL  D++++FAG
Sbjct: 1   MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILKEDHTIGNLIRMQLIADQDIIFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK 112
           Y++PHPL++ + +RI T + ++P++   +++  L +E   L+N+F  +  K
Sbjct: 61  YRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSREFTSLENSFIEQVQK 111

[Close]

BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

[Close]

BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot
Match: Q9VJE4 (DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 GN=Rpb11 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 56/106 (52.83%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK+  E DTK+ NAA FTI +E+HT+GN++R QL +D NVLFAG
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDTKVTNAAIFTINKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFE 107
           YK+PHPL++K ++RI TT+  SP +A+  AI DL  EL   +  F+
Sbjct: 61  YKVPHPLEHKFVIRIQTTADYSPQEAFMNAITDLLAELSLFEERFK 106

[Close]

BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP  +E F++ EG KK++  +DTK+ NA  FTI +E+HT+GNI++ QL +D  VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAF 106
           YK+PHPL++KII+R+ TT   SP +A+  AI DL  EL  L+  F
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERF 105

[Close]

BLAST of CsGy3G027450 vs. NCBI nr
Match: XP_011651771.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus] >XP_038903613.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Benincasa hispida] >KGN58584.1 hypothetical protein Csa_002674 [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 1.89e-79
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. NCBI nr
Match: XP_008461807.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo])

HSP 1 Score: 236 bits (603), Expect = 1.56e-78
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of CsGy3G027450 vs. NCBI nr
Match: XP_022152550.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia])

HSP 1 Score: 234 bits (598), Expect = 9.03e-78
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. NCBI nr
Match: XP_022949378.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_023525451.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita pepo subsp. pepo] >KAG6606882.1 DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 234 bits (598), Expect = 9.03e-78
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+N FEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. NCBI nr
Match: XP_021645507.1 (DNA-directed RNA polymerases II, IV and V subunit 11 [Hevea brasiliensis] >ANG56495.1 DNA-directed RNA polymerase [Hevea brasiliensis subsp. brasiliensis])

HSP 1 Score: 233 bits (595), Expect = 2.59e-77
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AKFS+DY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSQDY 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL
Match: A0A0A0LCD5 (RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810 PE=3 SV=1)

HSP 1 Score: 239 bits (609), Expect = 9.17e-80
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL
Match: A0A1S3CG10 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=LOC103500319 PE=3 SV=1)

HSP 1 Score: 236 bits (603), Expect = 7.55e-79
Identity = 115/116 (99.14%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAK SRDY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKLSRDY 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL
Match: A0A6J1DE90 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3673 GN=LOC111020248 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 4.37e-78
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPL+YKII+RIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AKFSRDY
Sbjct: 61  YKLPHPLKYKIIIRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL
Match: A0A6J1GBY1 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=3662 GN=LOC111452748 PE=3 SV=1)

HSP 1 Score: 234 bits (598), Expect = 4.37e-78
Identity = 113/116 (97.41%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELDHL+N FEAEFAKFSRDY
Sbjct: 61  YKLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLRNGFEAEFAKFSRDY 116

[Close]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL
Match: A0A1S5R4J3 (DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 PE=2 SV=1)

HSP 1 Score: 233 bits (595), Expect = 1.25e-77
Identity = 112/116 (96.55%), Postives = 115/116 (99.14%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAPDRYERFVVPEGTKKVSYERDTKIINAASFT+ERE+HTIGNILRMQLHRDENVLFAG
Sbjct: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTVEREDHTIGNILRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 116
           YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAE AKFS+DY
Sbjct: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEIAKFSQDY 116

[Close]

BLAST of CsGy3G027450 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 216.1 bits (549), Expect = 1.5e-56
Identity = 103/116 (88.79%), Postives = 112/116 (96.55%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVRIHTTSQSSPMQAYNQAINDLDKELDHLKNAFEAEFAKFSRDY 117
           Y+LPHPL+YKIIVRIHTTSQSSPMQAYNQAINDLDKELD+LKN FEAE AKFS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of CsGy3G027450 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 200.3 bits (508), Expect = 8.6e-52
Identity = 103/146 (70.55%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 1   MNAPDRYERFVVPEGTKKVSYERDTKIINAASFTIEREEHTIGNILRMQLHRDENVLFAG 60
           MNAP+RYERFVVPEGTKKVSY+RDTKIINAASFT+ERE+HTIGNI+RMQLHRDENVLFAG
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YKLPHPLQYKIIVR------------------------------IHTTSQSSPMQAYNQA 117
           Y+LPHPL+YKIIVR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

[Close]

BLAST of CsGy3G027450 vs. TAIR 10
Match: AT2G29540.1 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 25/85 (29.41%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFEAEFAKF 113
             A  +L +   H+++ F+   A++
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

[Close]

BLAST of CsGy3G027450 vs. TAIR 10
Match: AT2G29540.2 (RNApolymerase 14 kDa subunit )

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-08
Identity = 25/85 (29.41%), Postives = 49/85 (57.65%), Query Frame = 0


Query: 28  INAASFTIEREEHTIGNILRMQLHRDENVLFAGYKLPHPLQYKIIVRIHTTSQSSPMQAY 87
           ++ ASFT+  E+HT+ N +R  L++D  V  A Y +PHP   ++ +R+ TT   +  + +
Sbjct: 9   VSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGDPA-REVF 68

Query: 88  NQAINDLDKELDHLKNAFEAEFAKF 113
             A  +L +   H+++ F+   A++
Sbjct: 69  KDACQELMQMNRHVRSVFDKAVAEY 92

The following BLAST results are available for this feature:

BLAST of CsGy3G027450 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	2.1e-55	88.79	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
Q86JJ5	1.9e-27	47.75	DNA-directed RNA polymerase II subunit rpb11 OS=Dictyostelium discoideum OX=4468...	[more]
Q32P79	1.6e-26	52.38	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
Q9VJE4	1.6e-26	52.83	DNA-directed RNA polymerase II subunit RPB11 OS=Drosophila melanogaster OX=7227 ...	[more]
P52435	1.6e-26	52.38	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of CsGy3G027450 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651771.1	1.89e-79	100.00	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X1 [Cucumis sativus...	[more]
XP_008461807.1	1.56e-78	99.14	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11 [Cucumis melo]	[more]
XP_022152550.1	9.03e-78	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 [Momordica charantia]	[more]
XP_022949378.1	9.03e-78	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita moschata] >XP_02...	[more]
XP_021645507.1	2.59e-77	96.55	DNA-directed RNA polymerases II, IV and V subunit 11 [Hevea brasiliensis] >ANG56...	[more]

BLAST of CsGy3G027450 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCD5	9.17e-80	100.00	RNA_pol_L_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G690810...	[more]
A0A1S3CG10	7.55e-79	99.14	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucumis melo OX=3656 GN=...	[more]
A0A6J1DE90	4.37e-78	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Momordica charantia OX=3...	[more]
A0A6J1GBY1	4.37e-78	97.41	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Cucurbita moschata OX=36...	[more]
A0A1S5R4J3	1.25e-77	96.55	DNA-directed RNA polymerase OS=Hevea brasiliensis subsp. brasiliensis OX=187338 ...	[more]

BLAST of CsGy3G027450 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	1.5e-56	88.79	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	8.6e-52	70.55	DNA-directed RNA polymerase, RBP11-like	[more]
AT2G29540.1	1.5e-08	29.41	RNApolymerase 14 kDa subunit	[more]
AT2G29540.2	1.5e-08	29.41	RNApolymerase 14 kDa subunit	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..111
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..111
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..111
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..103 e-value: 5.1E-25 score: 87.1
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..115 e-value: 4.4E-48 score: 163.8
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..112
IPR008193	DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site	PROSITE	PS01154	RNA_POL_L_13KD	coord: 35..66
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..105 e-value: 3.22541E-50 score: 152.361

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G027450.2	CsGy3G027450.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity