CsGy3G025865 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G025865
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionMuDRA-like transposase
LocationGy14Chr3: 26566485 .. 26566781 (-)
RNA-Seq ExpressionCsGy3G025865
SyntenyCsGy3G025865
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAAAAACATTAAATTATCGTCACTTGAGCCCAACGTTCTATTAATTTCAAAGTACAATGGTGTCTTGAATGAGGTTTGGGATTTGAGTCTATTGAGTATTAACGTGCGTCCTTTAGAGTTGGGAGAAGATACATATGGATTAGCTAGCATGGTACAAGTAGAGTCATTAGACGATTATGATGTTGACGTGGATGCTGAAGCATTTAAGGTATCTGAGGTGGATACGTACTCATCCTGCAAATCATATTCAATTGATAGTTTGCAACAGAGGTTGAACGTACATTTGATGTAA

mRNA sequence

ATGGCAAAAAACATTAAATTATCGTCACTTGAGCCCAACGTTCTATTAATTTCAAAGTACAATGGTGTCTTGAATGAGGTTTGGGATTTGAGTCTATTGAGTATTAACGTGCGTCCTTTAGAGTTGGGAGAAGATACATATGGATTAGCTAGCATGGTACAAGTAGAGTCATTAGACGATTATGATGTTGACGTGGATGCTGAAGCATTTAAGGTATCTGAGGTGGATACGTACTCATCCTGCAAATCATATTCAATTGATAGTTTGCAACAGAGGTTGAACGTACATTTGATGTAA

Coding sequence (CDS)

ATGGCAAAAAACATTAAATTATCGTCACTTGAGCCCAACGTTCTATTAATTTCAAAGTACAATGGTGTCTTGAATGAGGTTTGGGATTTGAGTCTATTGAGTATTAACGTGCGTCCTTTAGAGTTGGGAGAAGATACATATGGATTAGCTAGCATGGTACAAGTAGAGTCATTAGACGATTATGATGTTGACGTGGATGCTGAAGCATTTAAGGTATCTGAGGTGGATACGTACTCATCCTGCAAATCATATTCAATTGATAGTTTGCAACAGAGGTTGAACGTACATTTGATGTAA

Protein sequence

MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDDYDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM*
Homology
BLAST of CsGy3G025865 vs. NCBI nr
Match: KGN58389.1 (hypothetical protein Csa_001210 [Cucumis sativus])

HSP 1 Score: 187 bits (476), Expect = 9.88e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60
          MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD
Sbjct: 1  MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60

Query: 61 YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM 98
          YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM
Sbjct: 61 YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM 98

BLAST of CsGy3G025865 vs. NCBI nr
Match: KAA0067248.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYK10857.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 6.58e-14
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 3  KNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60
          KNIKLSSLEPN+ LI +YN VLNEV +LS L++NV PLELG+DT  L SMV V+S DD
Sbjct: 4  KNIKLSSLEPNLQLIPEYNVVLNEVRNLSSLTVNVCPLELGDDTNRLVSMVHVKSFDD 61

BLAST of CsGy3G025865 vs. NCBI nr
Match: KAA0043247.1 (hypothetical protein E6C27_scaffold110G001310 [Cucumis melo var. makuwa] >TYK29311.1 hypothetical protein E5676_scaffold129G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 2.92e-08
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 7  LSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD------ 66
          +SS E N+ LI  YNGVLN+V DLS L+ N+ PL+L +DT  L SMV VESLDD      
Sbjct: 1  MSSHEHNLQLILVYNGVLNDVQDLSPLTTNMCPLKLEDDTKELVSMVHVESLDDDFNDND 60

Query: 67 ----------YDVDVDAEAFKVS 73
                    Y VDV+ EAF+VS
Sbjct: 61 NAFGMKMSSNY-VDVNMEAFEVS 82

BLAST of CsGy3G025865 vs. ExPASy TrEMBL
Match: A0A0A0LBR6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G636380 PE=4 SV=1)

HSP 1 Score: 187 bits (476), Expect = 4.78e-60
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60
          MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD
Sbjct: 1  MAKNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60

Query: 61 YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM 98
          YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM
Sbjct: 61 YDVDVDAEAFKVSEVDTYSSCKSYSIDSLQQRLNVHLM 98

BLAST of CsGy3G025865 vs. ExPASy TrEMBL
Match: A0A5D3CFW2 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00280 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.19e-14
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 3  KNIKLSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD 60
          KNIKLSSLEPN+ LI +YN VLNEV +LS L++NV PLELG+DT  L SMV V+S DD
Sbjct: 4  KNIKLSSLEPNLQLIPEYNVVLNEVRNLSSLTVNVCPLELGDDTNRLVSMVHVKSFDD 61

BLAST of CsGy3G025865 vs. ExPASy TrEMBL
Match: A0A5A7TN70 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00160 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.41e-08
Identity = 42/83 (50.60%), Postives = 51/83 (61.45%), Query Frame = 0

Query: 7  LSSLEPNVLLISKYNGVLNEVWDLSLLSINVRPLELGEDTYGLASMVQVESLDD------ 66
          +SS E N+ LI  YNGVLN+V DLS L+ N+ PL+L +DT  L SMV VESLDD      
Sbjct: 1  MSSHEHNLQLILVYNGVLNDVQDLSPLTTNMCPLKLEDDTKELVSMVHVESLDDDFNDND 60

Query: 67 ----------YDVDVDAEAFKVS 73
                    Y VDV+ EAF+VS
Sbjct: 61 NAFGMKMSSNY-VDVNMEAFEVS 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KGN58389.19.88e-60100.00hypothetical protein Csa_001210 [Cucumis sativus][more]
KAA0067248.16.58e-1468.97MuDRA-like transposase [Cucumis melo var. makuwa] >TYK10857.1 MuDRA-like transpo... [more]
KAA0043247.12.92e-0850.60hypothetical protein E6C27_scaffold110G001310 [Cucumis melo var. makuwa] >TYK293... [more]
Match NameE-valueIdentityDescription
A0A0A0LBR64.78e-60100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G636380 PE=4 SV=1[more]
A0A5D3CFW23.19e-1468.97MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2... [more]
A0A5A7TN701.41e-0850.60Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G025865.1CsGy3G025865.1mRNA