CsGy3G025520 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G025520
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 26210313 .. 26211497 (+)
RNA-Seq Expression	CsGy3G025520
Synteny	CsGy3G025520

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGCTTTCAATTTTCATTTAAGTCTCCACGTCAAGTTTGGCTATGGTTCTTTCTCAGACAAATTAAATGTGCATCGAATTTCAAATCTTCTCTGCTTTTTTTTTCACTTTGCCTTTTTCTCCTTTTTATCTCTCTCTCTCTCTCTCTTTCATGGGTATTTGAACCTCCACCATCCTCTTCATAACCTTAATCTTTCTCCACAATTTGCATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTGAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAACAAAAACAGAATTTTGTCAATGGGCGGTTTTGAGCGAAGACGTGGAAGTGTTTTTCTTCTGTAAATGAATGGCGAGCTGCAATGATTTTTTCATCTTCGCATGGATACTAACTGATCGACAAGAACAACCAAATCCGCCATTGAAGCGTCTCCTTTACACTGCTCTTCATCTCAATTTTTAATCTTCTTTTCTTCTTTCTTCCCTGTTTCTGTGTGGTTTGTTATTTATATATATAAACATATAGAGAGAGTTCATATTCGC

mRNA sequence

GGGGCTTTCAATTTTCATTTAAGTCTCCACGTCAAGTTTGGCTATGGTTCTTTCTCAGACAAATTAAATGTGCATCGAATTTCAAATCTTCTCTGCTTTTTTTTTCACTTTGCCTTTTTCTCCTTTTTATCTCTCTCTCTCTCTCTCTTTCATGGGTATTTGAACCTCCACCATCCTCTTCATAACCTTAATCTTTCTCCACAATTTGCATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTGAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAACAAAAACAGAATTTTGTCAATGGGCGGTTTTGAGCGAAGACGTGGAAGTGTTTTTCTTCTGTAAATGAATGGCGAGCTGCAATGATTTTTTCATCTTCGCATGGATACTAACTGATCGACAAGAACAACCAAATCCGCCATTGAAGCGTCTCCTTTACACTGCTCTTCATCTCAATTTTTAATCTTCTTTTCTTCTTTCTTCCCTGTTTCTGTGTGGTTTGTTATTTATATATATAAACATATAGAGAGAGTTCATATTCGC

Coding sequence (CDS)

ATGGCCGCAGCAACTATTTCAACATCACCAATTTCTCAATCCCTTAAACAATCTCACACTCAACATCATTATCATCATCTCTTTCACCTAATTCCATCTCTAACTCTTCTCTTCCTCTTTCTCACAATCACCATCCTCGGTAGCCCTTCCATGGCTGCCTTGGAGCCCACGAACTCTGAGTCGGAATCCACAGGCACAAGGCGGAGAGATGATCTTCGTTTTGAATCTGCAGTTTTACAGGTTCCGAGCGGACTGAAACCTACTTCGAACAATTTGTTGCAGAAACAGAGGTTGGCGTCCGAATCCTGCAGCAGACTGCGGAGAGACTATCGTCGTTTTGAATCTGACGAATCGAAACCCATTTCCAACATTCCGATGCAGAAACTGGTGTCGGAGTCAGAATTAAACGGCAGGCGGTGGAGAGGCTATCGTCGGTTTGAATCTGCTGCGAGCGGAACGAAACCTAGTTCGAACAATCCGCCGCGGAAAAAGAGATTGAAGTTGGAATCTAGCGGTAGGCGGTGGAGAGACTATCGTCGATTTGAATCCGCAGTTCTCAAAGTTCCAACCGGCAAAAGGAATCACGCTTCGAACAATCCGCCGCTGAAACAGAAGCCGAACTCGGAATCCGGCGACAGGCGGAGGAGAAATGACCATCTATTTGAATCTGCGGCGCATGAAGTTCCGAGTGGGCCGAATCCGATTTCGAACTAA

Protein sequence

MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRRFESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN*

Homology

[Close]

BLAST of CsGy3G025520 vs. NCBI nr
Match: KAA0068203.1 (hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK21123.1 hypothetical protein E5676_scaffold392G001030 [Cucumis melo var. makuwa])

HSP 1 Score: 374 bits (961), Expect = 3.89e-129
Identity = 200/239 (83.68%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
           MAA TISTSPIS SLKQSH+ HH  +HHLFHL P LTLLFLFLTI ILGSPSMAALEP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
           S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R   DYRRFESD  
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120

Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDY 180
           KPISN  MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGRRWRDY
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180

Query: 181 RRFESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
           RRFESA LKVP  K+NHASNNPPLKQKPNSESG  RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239

[Close]

BLAST of CsGy3G025520 vs. NCBI nr
Match: KAE8650847.1 (hypothetical protein Csa_002136 [Cucumis sativus])

HSP 1 Score: 363 bits (931), Expect = 3.26e-125
Identity = 197/237 (83.12%), Postives = 197/237 (83.12%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180
           ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRR      
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRR------ 180

Query: 181 FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
                                             RRNDHLFESAAHEVPSGPNPISN
Sbjct: 181 ----------------------------------RRNDHLFESAAHEVPSGPNPISN 197

[Close]

BLAST of CsGy3G025520 vs. NCBI nr
Match: XP_022931103.1 (uncharacterized protein LOC111437389 [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 6.76e-21
Identity = 91/238 (38.24%), Postives = 108/238 (45.38%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MA A+ S+SP S S +             LIPSLTLLF+FLT  +LGSPSMAA       
Sbjct: 1   MATASSSSSPNSSSSRN------------LIPSLTLLFVFLTAVVLGSPSMAA------- 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
                         ES    +P  L    NN  +K RL SES  R  RD R         
Sbjct: 61  -------------SESQTRLIPHSL----NNPPRKHRLESESGGRRPRDDR--------- 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180
               P++  V E                  SGT    NNPPRK+R   ES GR       
Sbjct: 121 ----PLESAVFE----------------VTSGTNHVLNNPPRKQRSDSESGGR------- 155

Query: 181 FESAVLKVPTGKRNHA-SNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
                     G+RN   SN+PP +Q  + +SG + RR+D  FESAAHEVPSGPNPISN
Sbjct: 181 ----------GRRNDRDSNSPPRQQSLDKKSGGQ-RRDDSRFESAAHEVPSGPNPISN 155

[Close]

BLAST of CsGy3G025520 vs. ExPASy TrEMBL
Match: A0A0A0LE33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1)

HSP 1 Score: 462 bits (1190), Expect = 2.23e-164
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE
Sbjct: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
           SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP
Sbjct: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180
           ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR
Sbjct: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180

Query: 181 FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
           FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN
Sbjct: 181 FESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237

[Close]

BLAST of CsGy3G025520 vs. ExPASy TrEMBL
Match: A0A5D3DC24 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G001030 PE=4 SV=1)

HSP 1 Score: 374 bits (961), Expect = 1.89e-129
Identity = 200/239 (83.68%), Postives = 206/239 (86.19%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHH--YHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTN 60
           MAA TISTSPIS SLKQSH+ HH  +HHLFHL P LTLLFLFLTI ILGSPSMAALEP  
Sbjct: 1   MAATTISTSPISLSLKQSHSHHHRPHHHLFHLTPYLTLLFLFLTIAILGSPSMAALEPLK 60

Query: 61  SESESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDES 120
           S SESTGTRRRDD RFESAVLQVPSG KPTSNNLLQ+QRL SES +R   DYRRFESD  
Sbjct: 61  SVSESTGTRRRDDRRFESAVLQVPSGPKPTSNNLLQEQRLESESSNRRWTDYRRFESDGP 120

Query: 121 KPISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDY 180
           KPISN  MQKLVSESE NGRRWRGYRRFES ASGTK SS NPPRKKRL+ ESSGRRWRDY
Sbjct: 121 KPISNSSMQKLVSESESNGRRWRGYRRFESVASGTKSSSKNPPRKKRLESESSGRRWRDY 180

Query: 181 RRFESAVLKVPTGKRNHASNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
           RRFESA LKVP  K+NHASNNPPLKQKPNSESG  RRRND LFESAAHEVPSGPNPISN
Sbjct: 181 RRFESAALKVPNNKKNHASNNPPLKQKPNSESGGWRRRNDRLFESAAHEVPSGPNPISN 239

[Close]

BLAST of CsGy3G025520 vs. ExPASy TrEMBL
Match: A0A6J1EXF7 (uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC111437389 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.27e-21
Identity = 91/238 (38.24%), Postives = 108/238 (45.38%), Query Frame = 0


Query: 1   MAAATISTSPISQSLKQSHTQHHYHHLFHLIPSLTLLFLFLTITILGSPSMAALEPTNSE 60
           MA A+ S+SP S S +             LIPSLTLLF+FLT  +LGSPSMAA       
Sbjct: 1   MATASSSSSPNSSSSRN------------LIPSLTLLFVFLTAVVLGSPSMAA------- 60

Query: 61  SESTGTRRRDDLRFESAVLQVPSGLKPTSNNLLQKQRLASESCSRLRRDYRRFESDESKP 120
                         ES    +P  L    NN  +K RL SES  R  RD R         
Sbjct: 61  -------------SESQTRLIPHSL----NNPPRKHRLESESGGRRPRDDR--------- 120

Query: 121 ISNIPMQKLVSESELNGRRWRGYRRFESAASGTKPSSNNPPRKKRLKLESSGRRWRDYRR 180
               P++  V E                  SGT    NNPPRK+R   ES GR       
Sbjct: 121 ----PLESAVFE----------------VTSGTNHVLNNPPRKQRSDSESGGR------- 155

Query: 181 FESAVLKVPTGKRNHA-SNNPPLKQKPNSESGDRRRRNDHLFESAAHEVPSGPNPISN 237
                     G+RN   SN+PP +Q  + +SG + RR+D  FESAAHEVPSGPNPISN
Sbjct: 181 ----------GRRNDRDSNSPPRQQSLDKKSGGQ-RRDDSRFESAAHEVPSGPNPISN 155

The following BLAST results are available for this feature:

BLAST of CsGy3G025520 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G025520 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0068203.1	3.89e-129	83.68	hypothetical protein E6C27_scaffold238G001890 [Cucumis melo var. makuwa] >TYK211...	[more]
KAE8650847.1	3.26e-125	83.12	hypothetical protein Csa_002136 [Cucumis sativus]	[more]
XP_022931103.1	6.76e-21	38.24	uncharacterized protein LOC111437389 [Cucurbita moschata]	[more]

BLAST of CsGy3G025520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LE33	2.23e-164	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G626150 PE=4 SV=1	[more]
A0A5D3DC24	1.89e-129	83.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EXF7	3.27e-21	38.24	uncharacterized protein LOC111437389 OS=Cucurbita moschata OX=3662 GN=LOC1114373...	[more]

BLAST of CsGy3G025520 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 186..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G025520.2	CsGy3G025520.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane