CsGy3G024655 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G024655
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 24812678 .. 24813098 (+)
RNA-Seq Expression	CsGy3G024655
Synteny	CsGy3G024655

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATTTCAAACCGTCATGCGATTCCGATCATCTCGTCTCGTTTTCGATCATTGCCATCGTGGAAAAACATCGTTCATCTCCAAATGTTCACCATCTTCGAACGTCGTTCATCTCCAAAGTCGATCATCTCCAGATGTCGTTCACCAACAATCATCGCCCACCAAGTCTTGAGACTCAAAGTACGGTGTAATTTTTTTTGTTCTTTTTGTTAAAAGGCGTGATTTTCTTTTTCTAAATTTTTAAATAACCCATCAACTCATACACATGAATTTCACTATTTAACTTATGTTGTTTGTCTCTATGTAGCAATACAATCTTCAATCGCAAGCCTTAATAATCTCTCCTCCCCTCAATCACTCACTCGCCCTACTTCCAGGTTTGTCCATTCTAGGTTTTCTTCAGTTACGCTTGCTATAA

mRNA sequence

ATGAAAATTTCAAACCGTCATGCGATTCCGATCATCTCGTCTCGTTTTCGATCATTGCCATCGTGGAAAAACATCGTTCATCTCCAAATGTTCACCATCTTCGAACGTCGTTCATCTCCAAAGTCGATCATCTCCAGATGTCGTTCACCAACAATCATCGCCCACCAAGTCTTGAGACTCAAACAATACAATCTTCAATCGCAAGCCTTAATAATCTCTCCTCCCCTCAATCACTCACTCGCCCTACTTCCAGGTTTGTCCATTCTAGGTTTTCTTCAGTTACGCTTGCTATAA

Coding sequence (CDS)

ATGAAAATTTCAAACCGTCATGCGATTCCGATCATCTCGTCTCGTTTTCGATCATTGCCATCGTGGAAAAACATCGTTCATCTCCAAATGTTCACCATCTTCGAACGTCGTTCATCTCCAAAGTCGATCATCTCCAGATGTCGTTCACCAACAATCATCGCCCACCAAGTCTTGAGACTCAAACAATACAATCTTCAATCGCAAGCCTTAATAATCTCTCCTCCCCTCAATCACTCACTCGCCCTACTTCCAGGTTTGTCCATTCTAGGTTTTCTTCAGTTACGCTTGCTATAA

Protein sequence

MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRLKQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL*

Homology

[Close]

BLAST of CsGy3G024655 vs. NCBI nr
Match: KGN58262.1 (hypothetical protein Csa_017529 [Cucumis sativus])

HSP 1 Score: 187 bits (475), Expect = 1.31e-59
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL 60
          MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL
Sbjct: 1  MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL 60

Query: 61 KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL 97
          KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL
Sbjct: 61 KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL 97

[Close]

BLAST of CsGy3G024655 vs. ExPASy TrEMBL
Match: A0A0A0LC34 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600520 PE=4 SV=1)

HSP 1 Score: 187 bits (475), Expect = 6.32e-60
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL 60
          MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL
Sbjct: 1  MKISNRHAIPIISSRFRSLPSWKNIVHLQMFTIFERRSSPKSIISRCRSPTIIAHQVLRL 60

Query: 61 KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL 97
          KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL
Sbjct: 61 KQYNLQSQALIISPPLNHSLALLPGLSILGFLQLRLL 97

The following BLAST results are available for this feature:

BLAST of CsGy3G024655 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G024655 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58262.1	1.31e-59	100.00	hypothetical protein Csa_017529 [Cucumis sativus]	[more]

BLAST of CsGy3G024655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC34	6.32e-60	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G600520 PE=4 SV=1	[more]

BLAST of CsGy3G024655 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 97..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G024655.1	CsGy3G024655.1	mRNA