CsGy3G023565 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G023565
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Transcription factor UPBEAT1
Location	Gy14Chr3: 23310196 .. 23310468 (-)
RNA-Seq Expression	CsGy3G023565
Synteny	CsGy3G023565

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATAGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA

mRNA sequence

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATAGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA

Coding sequence (CDS)

ATGGAAATTTTGGCAAAAGATACGGTCTCAGACAGGCGAATTGCAAAACAAGTGATCAAGAAGAAGGTAGAGATGGTGTCGAGGTCGTCAAGGTCGTCAGAGAAGAGGATTTGTTTGAAGAGGATTAGGAGGCTGAAGAAGATGGTTCCAAAGAGTGAATCTATGGAGTTGAATGGTCTTTTTAGAGAGACAGCCGATTATATAGTGTGGTTGCAAATGAAGGTGAGGATGATGCAAGCTTTGGTTCATGTGCTTAATGGCTCTGACGAGTGA

Protein sequence

MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE*

Homology

[Close]

BLAST of CsGy3G023565 vs. ExPASy Swiss-Prot
Match: O22901 (Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.2e-07
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CsGy3G023565 vs. NCBI nr
Match: KGN58133.1 (hypothetical protein Csa_017541 [Cucumis sativus])

HSP 1 Score: 169 bits (429), Expect = 8.21e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CsGy3G023565 vs. NCBI nr
Match: KAA0038125.1 (basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic helix-loop-helix protein [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (416), Expect = 7.91e-51
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CsGy3G023565 vs. NCBI nr
Match: KAE9618351.1 (putative myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Lupinus albus] >KAF1878871.1 hypothetical protein Lal_00047543 [Lupinus albus])

HSP 1 Score: 78.6 bits (192), Expect = 2.04e-16
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 2   EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLF 61
           ++LAK +V  +R  K V+KK+V      SR   K I  +R+R LK++VP SES+EL+GLF
Sbjct: 33  KVLAKKSVQGKRPRKIVMKKRV-----GSRRGVKGI-QRRVRTLKRLVPNSESLELDGLF 92

Query: 62  RETADYIVWLQMKVRMMQALVHVLNGSDE 90
            ETADYI+ LQ +VR+MQ +V+VL GSDE
Sbjct: 93  TETADYILALQTRVRIMQVMVNVLTGSDE 115

[Close]

BLAST of CsGy3G023565 vs. NCBI nr
Match: XP_019427947.1 (PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1 hypothetical protein TanjilG_02015 [Lupinus angustifolius])

HSP 1 Score: 72.8 bits (177), Expect = 4.51e-14
Identity = 34/51 (66.67%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90
           +++R LKK+VP SES+EL+GLFRETADYI+ LQ +VR+M+ LV+VL GSDE
Sbjct: 72  RKVRTLKKLVPNSESLELDGLFRETADYILALQTRVRIMKVLVNVLTGSDE 122

[Close]

BLAST of CsGy3G023565 vs. NCBI nr
Match: XP_034911859.1 (transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protein D5086_0000325720 [Populus alba])

HSP 1 Score: 72.4 bits (176), Expect = 6.08e-14
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL
Match: A0A0A0L8J6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1)

HSP 1 Score: 169 bits (429), Expect = 3.98e-53
Identity = 90/90 (100.00%), Postives = 90/90 (100.00%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL
Match: A0A5A7T9M0 (Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold237G00560 PE=4 SV=1)

HSP 1 Score: 164 bits (416), Expect = 3.83e-51
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 0


Query: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGL 60
          MEILAKDTVSDRRIAKQVIKKKVEMVSR SRSSEKRICLKRIR+L+KM+PKSESMELNGL
Sbjct: 1  MEILAKDTVSDRRIAKQVIKKKVEMVSRLSRSSEKRICLKRIRKLRKMIPKSESMELNGL 60

Query: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90
          FRETADYIVWLQMKVRMMQALVHVLNGSDE
Sbjct: 61 FRETADYIVWLQMKVRMMQALVHVLNGSDE 90

[Close]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL
Match: A0A6A4QW51 (Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Lupinus albus OX=3870 GN=Lal_00047543 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.89e-17
Identity = 47/89 (52.81%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 2   EILAKDTVSDRRIAKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNGLF 61
           ++LAK +V  +R  K V+KK+V      SR   K I  +R+R LK++VP SES+EL+GLF
Sbjct: 33  KVLAKKSVQGKRPRKIVMKKRV-----GSRRGVKGI-QRRVRTLKRLVPNSESLELDGLF 92

Query: 62  RETADYIVWLQMKVRMMQALVHVLNGSDE 90
            ETADYI+ LQ +VR+MQ +V+VL GSDE
Sbjct: 93  TETADYILALQTRVRIMQVMVNVLTGSDE 115

[Close]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL
Match: A0A4V5ZXB7 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.94e-14
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+VR+MQ +V VL GSD+
Sbjct: 68  RRVRTLKKLIPDSESMGLDGLFRETADYILSLQMRVRVMQIMVKVLTGSDD 118

[Close]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL
Match: B9GSV5 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 9.07e-14
Identity = 33/51 (64.71%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 40  KRIRRLKKMVPKSESMELNGLFRETADYIVWLQMKVRMMQALVHVLNGSDE 90
           +R+R LKK++P SESM L+GLFRETADYI+ LQM+V++MQ +V VL GSD+
Sbjct: 86  RRVRTLKKLIPNSESMGLDGLFRETADYILSLQMRVKVMQIMVKVLTGSDD 136

[Close]

BLAST of CsGy3G023565 vs. TAIR 10
Match: AT2G47270.1 (sequence-specific DNA binding transcription factors;transcription regulators )

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 33/78 (42.31%), Postives = 56/78 (71.79%), Query Frame = 0


Query: 12 RRIAKQVIKKKVEMVSRSSRSSEKRICL---KRIRRLKKMVPKSESME-LNGLFRETADY 71
          R+ A++ + KK+ +  R S  + +R C    +R++ LK++VP +++ E L+GLFR+TADY
Sbjct: 19 RQRARRALVKKIMIRPRKSVEASRRPCRAIHRRVKTLKELVPNTKTSEGLDGLFRQTADY 78

Query: 72 IVWLQMKVRMMQALVHVL 86
          I+ L+MKV++MQ +V VL
Sbjct: 79 ILALEMKVKVMQTMVQVL 96

[Close]

BLAST of CsGy3G023565 vs. TAIR 10
Match: AT4G30410.2 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 4   LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG- 63
           L K TV  R+I   +K+++++K +  S  + +  KR+  +R + L+ +VP  E M  +  
Sbjct: 89  LPKKTVCHRKIVRRSKKILRRKSKSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVL 148

Query: 64  LFRETADYIVWLQMKVRMMQALV 83
           L +ET DYIV LQ +V +M+++V
Sbjct: 149 LLQETLDYIVSLQTQVNVMRSIV 171

[Close]

BLAST of CsGy3G023565 vs. TAIR 10
Match: AT4G30410.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 42.4 bits (98), Expect = 2.3e-04
Identity = 29/83 (34.94%), Postives = 51/83 (61.45%), Query Frame = 0


Query: 4   LAKDTVSDRRI---AKQVIKKKVEMVSRSSRSSEKRICLKRIRRLKKMVPKSESMELNG- 63
           L K TV  R+I   +K+++++K +  S  + +  KR+  +R + L+ +VP  E M  +  
Sbjct: 89  LPKKTVCHRKIVRRSKKILRRKSKSASEEAAAKAKRLVKRRTQGLRNVVPGGELMSNDVL 148

Query: 64  LFRETADYIVWLQMKVRMMQALV 83
           L +ET DYIV LQ +V +M+++V
Sbjct: 149 LLQETLDYIVSLQTQVNVMRSIV 171

The following BLAST results are available for this feature:

BLAST of CsGy3G023565 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22901	2.2e-07	42.31	Transcription factor UPBEAT1 OS=Arabidopsis thaliana OX=3702 GN=UPB1 PE=2 SV=1	[more]

BLAST of CsGy3G023565 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58133.1	8.21e-53	100.00	hypothetical protein Csa_017541 [Cucumis sativus]	[more]
KAA0038125.1	7.91e-51	95.56	basic helix-loop-helix protein [Cucumis melo var. makuwa] >TYK20482.1 basic heli...	[more]
KAE9618351.1	2.04e-16	52.81	putative myc-type, basic helix-loop-helix (bHLH) domain-containing protein [Lupi...	[more]
XP_019427947.1	4.51e-14	66.67	PREDICTED: transcription factor UPBEAT1-like [Lupinus angustifolius] >OIV91397.1...	[more]
XP_034911859.1	6.08e-14	66.67	transcription factor UPBEAT1-like [Populus alba] >TKR59225.1 hypothetical protei...	[more]

BLAST of CsGy3G023565 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8J6	3.98e-53	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G536650 PE=4 SV=1	[more]
A0A5A7T9M0	3.83e-51	95.56	Basic helix-loop-helix protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A6A4QW51	9.89e-17	52.81	Putative myc-type, basic helix-loop-helix (BHLH) domain-containing protein OS=Lu...	[more]
A0A4V5ZXB7	2.94e-14	66.67	Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000325720 PE=4 SV=1	[more]
B9GSV5	9.07e-14	64.71	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G193300 PE=4 ...	[more]

BLAST of CsGy3G023565 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47270.1	1.6e-08	42.31	sequence-specific DNA binding transcription factors;transcription regulators	[more]
AT4G30410.2	2.3e-04	34.94	sequence-specific DNA binding transcription factors	[more]
AT4G30410.1	2.3e-04	34.94	sequence-specific DNA binding transcription factors	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044660	Transcription factor IBH1-like	PANTHER	PTHR33124	TRANSCRIPTION FACTOR IBH1-LIKE 1	coord: 11..87
None	No IPR available	PANTHER	PTHR33124:SF39	TRANSCRIPTION FACTOR UPBEAT1	coord: 11..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G023565.1	CsGy3G023565.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated