CsGy3G022540 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G022540
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
DescriptionUnknown protein
LocationGy14Chr3: 21045347 .. 21045967 (-)
RNA-Seq ExpressionCsGy3G022540
SyntenyCsGy3G022540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGGTACGTCAATATTAGTCGACGATACATCACAAAGGTAGGAGCATCATACCATTTTTTGGTAAGGGTTTATTATTTAATTGAATCAATTAAAAATTGTTTAGTTACATAGTCTAATTGTAATTGTATGGACTGTAGGAAAAGTTTGACTAGTTGAAAATATCTAGTATACCATCAAATGCGGTGACTAGAACGATAAAACTTGTTTTGCGTAATTTGACATCCATATATAGAGTAAGATATTTTGAAGGCGATGTTCCTGATGAAGAACAAGGTGATCCAACTAGACATGAGGATTTTCCATTTTAACCTCATTTTCAAAATCAGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA

mRNA sequence

ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA

Coding sequence (CDS)

ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCCCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA

Protein sequence

MERKICPASAPLIKDTIDVAPGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD*
Homology
[Close]
BLAST of CsGy3G022540 vs. NCBI nr
Match: KAE8650707.1 (hypothetical protein Csa_010039 [Cucumis sativus])

HSP 1 Score: 202 bits (514), Expect = 1.57e-65
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 0 

Query: 1  MERKICPASAPLIKDTIDVAPGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60
          MERKICPASAPL+KDTIDVA GYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ
Sbjct: 1  MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60

Query: 61 TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 98
          TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD
Sbjct: 61 TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 98

[Close]
BLAST of CsGy3G022540 vs. NCBI nr
Match: KAA0037364.1 (hypothetical protein E6C27_scaffold278G00620 [Cucumis melo var. makuwa] >TYJ97542.1 hypothetical protein E5676_scaffold85G00600 [Cucumis melo var. makuwa])

HSP 1 Score: 50.1 bits (118), Expect = 1.14e-04
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 27  TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQT 61
           +Q  HFTNT +MPT T FD FSTNHD LNMEE QT
Sbjct: 161 SQADHFTNTPIMPTQT-FDLFSTNHDMLNMEESQT 194

[Close]
BLAST of CsGy3G022540 vs. ExPASy TrEMBL
Match: A0A0A0L8B6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1)

HSP 1 Score: 152 bits (384), Expect = 5.00e-46
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 27 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ 86
          TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ
Sbjct: 26 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ 85

Query: 87 QGRISRNSSTQD 98
          QGRISRNSSTQD
Sbjct: 86 QGRISRNSSTQD 97

[Close]
BLAST of CsGy3G022540 vs. ExPASy TrEMBL
Match: A0A5D3BCJ3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00600 PE=4 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 5.52e-05
Identity = 25/35 (71.43%), Postives = 27/35 (77.14%), Query Frame = 0 

Query: 27  TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQT 61
           +Q  HFTNT +MPT T FD FSTNHD LNMEE QT
Sbjct: 161 SQADHFTNTPIMPTQT-FDLFSTNHDMLNMEESQT 194

The following BLAST results are available for this feature:
BLAST of CsGy3G022540 vs.
Match NameE-valueIdentityDescription
BLAST of CsGy3G022540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650707.11.57e-6597.96hypothetical protein Csa_010039 [Cucumis sativus][more]
KAA0037364.11.14e-0471.43hypothetical protein E6C27_scaffold278G00620 [Cucumis melo var. makuwa] >TYJ9754... [more]
BLAST of CsGy3G022540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8B65.00e-46100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1[more]
A0A5D3BCJ35.52e-0571.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsGy3G022540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G022540.2CsGy3G022540.2mRNA