CsGy3G022293 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G022293
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	DUF4283 domain-containing protein
Location	Gy14Chr3: 20702128 .. 20702493 (+)
RNA-Seq Expression	CsGy3G022293
Synteny	CsGy3G022293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

mRNA sequence

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

Coding sequence (CDS)

ATGATAGTTGGTAGTAATGCTCAAAATGAGGATAAGGGGGAGAATGTGTCTACAGAGGGTGAAGGTTTAGGTATTGTGGCTTGTGAGTATATTTTGATTGAGTCCTTCATGCAGTTAAAGGAAGGTGAAATTCATGGCTCTCTAGATGAGTCTTCAAATCAGAAGGAGAGAGATGTAAAGAAAAGTGATAACTTTACTCCTATGACTCGTAAACGACGGGAGTTGGTGTTAGTTAAAGATCATGGGGTAGGCAAGGTTATGGCAGATGCTAACTCTTCTAGTAGTCTTACTAATCTGGGGAGGACAATAGTTGGGCCTTTGCTATTGTGGACGATAACTCTTCTAGTAGTCTTACTAATCAGGTGA

Protein sequence

MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLIR*

Homology

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BLAST of CsGy3G022293 vs. NCBI nr
Match: KGN57979.1 (hypothetical protein Csa_009513 [Cucumis sativus])

HSP 1 Score: 228 bits (580), Expect = 7.28e-75
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60
           MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK
Sbjct: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60

Query: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120
           KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI
Sbjct: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120

[Close]

BLAST of CsGy3G022293 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.28e-09
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D FT 
Sbjct: 344 QEEVVSKIIPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVEKEVGKLDEFTL 403

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLL 115
           +TRK+RELV V+D G    +   NS  SL       VG +  W +T++
Sbjct: 404 VTRKKRELVSVRDRGKSLEVTMPNSFGSLLE-----VGDINKWALTII 446

[Close]

BLAST of CsGy3G022293 vs. NCBI nr
Match: KAA0025860.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK22605.1 DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 3.43e-09
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 21  EGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKD 80
           E L  VAC  ++IESF QL+EGEI  SLD  S Q E++V + D FT +TRK+RELV V+D
Sbjct: 445 EELANVACGKVVIESFKQLEEGEIKSSLDRPSCQMEKEVGERDEFTLVTRKKRELVSVRD 504

Query: 81  HGVGKVMADANSSSSL 96
            G    +   NS  SL
Sbjct: 505 RGKSLEVTMPNSFDSL 520

[Close]

BLAST of CsGy3G022293 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 4.61e-09
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 18  TEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVL 77
           ++G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D+FT +TRK+RELV 
Sbjct: 307 SKGDGLDSEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVF 366

Query: 78  VKDHGVGKVMADANSSSSLTNLG 100
           V+D G    +   N   SL  +G
Sbjct: 367 VRDRGKSLEVTMPNFFGSLLEVG 389

[Close]

BLAST of CsGy3G022293 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 6.84e-09
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +GEG+    C  +++ESF QL+EGEI  S +   +  E++V K D FT 
Sbjct: 163 QEEVVSKIIPGKGEGVDSEPCAKVVLESFKQLEEGEIRSSPNRHGSHVEKEVGKRDEFTL 222

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLG 100
           +TRK+ ELV V+D G   V+A  NS  SL  +G
Sbjct: 223 VTRKKSELVSVRDRGKSIVVAMPNSFGSLLEVG 255

[Close]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL
Match: A0A0A0LAL0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417710 PE=4 SV=1)

HSP 1 Score: 228 bits (580), Expect = 3.53e-75
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60
           MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK
Sbjct: 1   MIVGSNAQNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVK 60

Query: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120
           KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI
Sbjct: 61  KSDNFTPMTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLLVVLLI 120

[Close]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.20e-10
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D FT 
Sbjct: 344 QEEVVSKIIPGKGDGLDSEPCGEVVLESFKQLEEGEIRSSPNRHSSQVEKEVGKLDEFTL 403

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLGRTIVGPLLLWTITLL 115
           +TRK+RELV V+D G    +   NS  SL       VG +  W +T++
Sbjct: 404 VTRKKRELVSVRDRGKSLEVTMPNSFGSLLE-----VGDINKWALTII 446

[Close]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL
Match: A0A5A7SI67 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00250 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.66e-09
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 0


Query: 21  EGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVLVKD 80
           E L  VAC  ++IESF QL+EGEI  SLD  S Q E++V + D FT +TRK+RELV V+D
Sbjct: 445 EELANVACGKVVIESFKQLEEGEIKSSLDRPSCQMEKEVGERDEFTLVTRKKRELVSVRD 504

Query: 81  HGVGKVMADANSSSSL 96
            G    +   NS  SL
Sbjct: 505 RGKSLEVTMPNSFDSL 520

[Close]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.23e-09
Identity = 36/83 (43.37%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 18  TEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTPMTRKRRELVL 77
           ++G+GL    C  +++ESF QL+EGEI  S +  S+Q E++V K D+FT +TRK+RELV 
Sbjct: 307 SKGDGLDSEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVF 366

Query: 78  VKDHGVGKVMADANSSSSLTNLG 100
           V+D G    +   N   SL  +G
Sbjct: 367 VRDRGKSLEVTMPNFFGSLLEVG 389

[Close]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.31e-09
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 8   QNEDKGENVSTEGEGLGIVACEYILIESFMQLKEGEIHGSLDESSNQKERDVKKSDNFTP 67
           Q E   + +  +GEG+    C  +++ESF QL+EGEI  S +   +  E++V K D FT 
Sbjct: 163 QEEVVSKIIPGKGEGVDSEPCAKVVLESFKQLEEGEIRSSPNRHGSHVEKEVGKRDEFTL 222

Query: 68  MTRKRRELVLVKDHGVGKVMADANSSSSLTNLG 100
           +TRK+ ELV V+D G   V+A  NS  SL  +G
Sbjct: 223 VTRKKSELVSVRDRGKSIVVAMPNSFGSLLEVG 255

The following BLAST results are available for this feature:

BLAST of CsGy3G022293 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G022293 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57979.1	7.28e-75	100.00	hypothetical protein Csa_009513 [Cucumis sativus]	[more]
TYK23423.1	1.28e-09	38.89	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]
KAA0025860.1	3.43e-09	51.32	DUF4283 domain-containing protein [Cucumis melo var. makuwa] >TYK22605.1 DUF4283...	[more]
KAA0060724.1	4.61e-09	43.37	hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466...	[more]
KAA0062888.1	6.84e-09	40.86	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAL0	3.53e-75	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G417710 PE=4 SV=1	[more]
A0A5D3DIK9	6.20e-10	38.89	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SI67	1.66e-09	51.32	DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V084	2.23e-09	43.37	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5A7V5J2	3.31e-09	40.86	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]

BLAST of CsGy3G022293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G022293.1	CsGy3G022293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane