CsGy3G021755 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G021755
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Unknown protein
Location	Gy14Chr3: 19984938 .. 19985375 (-)
RNA-Seq Expression	CsGy3G021755
Synteny	CsGy3G021755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATACCACTTTATAATTTCCATTTCCATCATCGTTAATTAATTATCAGCTCAAAGACCCTCCTCCCTTTTCCCAAATGAAGATCCAATTTTCTTTCCTCTTAGCCATTTTGGTTCTTCTTGCCAACACTCATCACCTCCAAAGTTGTAGAACCATCAAAGACGACCAACAAAACTGGTCCATCGACCTACAACTTCTTCAGCAGTCACTGCAGCGGGTGCCGGTCCCTCCCTCGGCCAAAAATGGAGACACCAATATTCCCGTACCGGTGGGGCAAAGGGCATTTGCCGGAAAAACTTCGGCTGCGCTGGCACGTAACTACAGTTGATAATGTACCGATTGTCCTTTTTGGTGTGTCCTTGAAGACGAAGTAATAAACCCTTAAACAACATCCATGGAAAATTTCTTTTTTCAATTATTCAATTTATTTATGCTTAGG

mRNA sequence

CATACCACTTTATAATTTCCATTTCCATCATCGTTAATTAATTATCAGCTCAAAGACCCTCCTCCCTTTTCCCAAATGAAGATCCAATTTTCTTTCCTCTTAGCCATTTTGGTTCTTCTTGCCAACACTCATCACCTCCAAAGTTGTAGAACCATCAAAGACGACCAACAAAACTGGTCCATCGACCTACAACTTCTTCAGCAGTCACTGCAGCGGGTGCCGGTCCCTCCCTCGGCCAAAAATGGAGACACCAATATTCCCGTACCGGTGGGGCAAAGGGCATTTGCCGGAAAAACTTCGGCTGCGCTGGCACGTAACTACAGTTGATAATGTACCGATTGTCCTTTTTGGTGTGTCCTTGAAGACGAAGTAATAAACCCTTAAACAACATCCATGGAAAATTTCTTTTTTCAATTATTCAATTTATTTATGCTTAGG

Coding sequence (CDS)

ATGAAGATCCAATTTTCTTTCCTCTTAGCCATTTTGGTTCTTCTTGCCAACACTCATCACCTCCAAAGTTGTAGAACCATCAAAGACGACCAACAAAACTGGTCCATCGACCTACAACTTCTTCAGCAGTCACTGCAGCGGGTGCCGGTCCCTCCCTCGGCCAAAAATGGAGACACCAATATTCCCGTACCGGTGGGGCAAAGGGCATTTGCCGGAAAAACTTCGGCTGCGCTGGCACGTAACTACAGTTGA

Protein sequence

MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTNIPVPVGQRAFAGKTSAALARNYS*

Homology

[Close]

BLAST of CsGy3G021755 vs. NCBI nr
Match: KGN57926.1 (hypothetical protein Csa_011112 [Cucumis sativus])

HSP 1 Score: 163 bits (412), Expect = 1.95e-50
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQRAFAGKTSAALARNYS 83
          IPVPVGQRAFAGKTSAALARNYS
Sbjct: 61 IPVPVGQRAFAGKTSAALARNYS 83

[Close]

BLAST of CsGy3G021755 vs. NCBI nr
Match: KAG6571505.1 (hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 117 bits (292), Expect = 5.43e-32
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQF+FLLAI+VLLAN H LQSCRT+KDD+Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFAFLLAIVVLLANAHQLQSCRTMKDDRQKWSI---LLQQSLQRAPVPPSAKNGGTT 60

Query: 61 IPVPVGQRAFAGKTSAALARNY 82
          IPVP+GQRAF GK++ + A +Y
Sbjct: 61 IPVPLGQRAFVGKSTPSPAHSY 79

[Close]

BLAST of CsGy3G021755 vs. NCBI nr
Match: KAG6571503.1 (hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 113 bits (283), Expect = 1.32e-30
Identity = 58/82 (70.73%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQF+FLLAILV+LAN H LQSCRT+K+D+Q WSI   LLQQSLQR PVPPSAKNG T 
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDRQKWSI--LLLQQSLQRAPVPPSAKNGGTT 60

Query: 61 IPVPVGQRAFAGKTSAALARNY 82
          IPVP+GQR+F GK++ + A +Y
Sbjct: 61 IPVPLGQRSFVGKSTPSPAHSY 80

[Close]

BLAST of CsGy3G021755 vs. NCBI nr
Match: KAA0025373.1 (hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ95702.1 hypothetical protein E5676_scaffold63958G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 3.99e-30
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQF+F  AILVLLAN HHLQSCRT+KDDQ+ WS+   L+QQSLQR PVPPS ++GDTN
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSM---LIQQSLQRAPVPPSTRDGDTN 60

Query: 61 IPVPVGQRAFAGKTSAALA 79
          IPVP+GQ+AFAGK++   A
Sbjct: 61 IPVPLGQQAFAGKSTVPPA 76

[Close]

BLAST of CsGy3G021755 vs. NCBI nr
Match: KAG6571504.1 (hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111 bits (277), Expect = 1.11e-29
Identity = 57/82 (69.51%), Postives = 67/82 (81.71%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQF+FLLAILV+LAN H LQSCRT+K+D Q WSI   LLQQSLQR PVPP+AKNG T 
Sbjct: 1  MKIQFAFLLAILVVLANAHQLQSCRTMKEDPQKWSI--LLLQQSLQRAPVPPNAKNGGTT 60

Query: 61 IPVPVGQRAFAGKTSAALARNY 82
          IP P+GQRAF GK++ + A +Y
Sbjct: 61 IPTPLGQRAFVGKSTPSPAHSY 80

[Close]

BLAST of CsGy3G021755 vs. ExPASy TrEMBL
Match: A0A0A0LCY5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 9.45e-51
Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN
Sbjct: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60

Query: 61 IPVPVGQRAFAGKTSAALARNYS 83
          IPVPVGQRAFAGKTSAALARNYS
Sbjct: 61 IPVPVGQRAFAGKTSAALARNYS 83

[Close]

BLAST of CsGy3G021755 vs. ExPASy TrEMBL
Match: A0A5D3B777 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold63958G00010 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 1.93e-30
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 0


Query: 1  MKIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTN 60
          MKIQF+F  AILVLLAN HHLQSCRT+KDDQ+ WS+   L+QQSLQR PVPPS ++GDTN
Sbjct: 1  MKIQFTFFFAILVLLANAHHLQSCRTMKDDQRKWSM---LIQQSLQRAPVPPSTRDGDTN 60

Query: 61 IPVPVGQRAFAGKTSAALA 79
          IPVP+GQ+AFAGK++   A
Sbjct: 61 IPVPLGQQAFAGKSTVPPA 76

[Close]

BLAST of CsGy3G021755 vs. ExPASy TrEMBL
Match: A0A6A3B4G4 (Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110321pilonHSYRG00407 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 4.87e-04
Identity = 29/61 (47.54%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 2  KIQFSFLLAILVLLANTHHLQSCRTIKDDQQNWSIDLQLLQQSLQRVPVPPSAKNGDTNI 61
          K  F+F+ AI VLL +  H+ + R + ++    S D  L+ QSLQR PVPPSA N  TNI
Sbjct: 9  KFTFTFISAI-VLLLSFQHVLATRPLDEEDDVPSFDKNLIVQSLQRGPVPPSAGNPCTNI 68

The following BLAST results are available for this feature:

BLAST of CsGy3G021755 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G021755 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57926.1	1.95e-50	100.00	hypothetical protein Csa_011112 [Cucumis sativus]	[more]
KAG6571505.1	5.43e-32	73.17	hypothetical protein SDJN03_28233, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6571503.1	1.32e-30	70.73	hypothetical protein SDJN03_28231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAA0025373.1	3.99e-30	70.89	hypothetical protein E6C27_scaffold1204G00600 [Cucumis melo var. makuwa] >TYJ957...	[more]
KAG6571504.1	1.11e-29	69.51	hypothetical protein SDJN03_28232, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsGy3G021755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCY5	9.45e-51	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G393150 PE=4 SV=1	[more]
A0A5D3B777	1.93e-30	70.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6A3B4G4	4.87e-04	47.54	Phosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1 OS=Hibiscus sy...	[more]

BLAST of CsGy3G021755 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021755.1	CsGy3G021755.1	mRNA