CsGy3G021637 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G021637
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Protein Ycf2-like
Location	Gy14Chr3: 19774538 .. 19774906 (+)
RNA-Seq Expression	CsGy3G021637
Synteny	CsGy3G021637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACCCAAAGATGATATCAAGGGAGGGGGTCATATAAAAGACATGTATTTTGATGTAGAAAGCAAAATAATGAGGATGTATATCGATGTAGGGTTCAAGGTTAGTAAGACTGGGACTGATACTGATAGGTTAAAAATGACTCAACTATATTTTTTGGATAGTTTCCTTTTACCTAAACAGGATAGTGTATATGTAGACATTGACCGTGTGTTGATGGTTGATGATGAAGAACTTTTTAGAACATATCCTTGGGGTAGGTTAGCTTTTGACCTTTTAGTTGATGCAATGCACAAAGCAGCATCTAGCAAGTGTGCTACAGGCATGACATTGGGTGGTTTTGTCTTTCCAATCCTTGTATGGGCTTATGAA

mRNA sequence

ATACCCAAAGATGATATCAAGGGAGGGGGTCATATAAAAGACATGTATTTTGATGTAGAAAGCAAAATAATGAGGATGTATATCGATGTAGGGTTCAAGGTTAGTAAGACTGGGACTGATACTGATAGGTTAAAAATGACTCAACTATATTTTTTGGATAGTTTCCTTTTACCTAAACAGGATAGTGTATATGTAGACATTGACCGTGTGTTGATGGTTGATGATGAAGAACTTTTTAGAACATATCCTTGGGGTAGGTTAGCTTTTGACCTTTTAGTTGATGCAATGCACAAAGCAGCATCTAGCAAGTGTGCTACAGGCATGACATTGGGTGGTTTTGTCTTTCCAATCCTTGTATGGGCTTATGAA

Coding sequence (CDS)

ATACCCAAAGATGATATCAAGGGAGGGGGTCATATAAAAGACATGTATTTTGATGTAGAAAGCAAAATAATGAGGATGTATATCGATGTAGGGTTCAAGGTTAGTAAGACTGGGACTGATACTGATAGGTTAAAAATGACTCAACTATATTTTTTGGATAGTTTCCTTTTACCTAAACAGGATAGTGTATATGTAGACATTGACCGTGTGTTGATGGTTGATGATGAAGAACTTTTTAGAACATATCCTTGGGGTAGGTTAGCTTTTGACCTTTTAGTTGATGCAATGCACAAAGCAGCATCTAGCAAGTGTGCTACAGGCATGACATTGGGTGGTTTTGTCTTTCCAATCCTTGTATGGGCTTATGAA

Protein sequence

IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQDSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVWAYE

Homology

[Close]

BLAST of CsGy3G021637 vs. NCBI nr
Match: KAA0040869.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 155 bits (392), Expect = 4.92e-42
Identity = 68/123 (55.28%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S   TD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++GGF+FPIL W
Sbjct: 100 ECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGFIFPILAW 159

Query: 121 AYE 123
           AYE
Sbjct: 160 AYE 162

[Close]

BLAST of CsGy3G021637 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 156 bits (395), Expect = 1.69e-41
Identity = 68/123 (55.28%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DI GGG +K +YF+    + R Y++V F +S TGTD DR+KM +LYFL+SFL+PKQ
Sbjct: 271 INHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDDDRIKMAKLYFLESFLIPKQ 330

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           +   VD D ++MVDD+E+F  YPWGR+AF+LLVD M++   SK  TG+++GGF+FPIL W
Sbjct: 331 ECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISMGGFIFPILAW 390

Query: 121 AYE 123
           AYE
Sbjct: 391 AYE 393

[Close]

BLAST of CsGy3G021637 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (387), Expect = 3.62e-41
Identity = 69/124 (55.65%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S  GTD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGG-FVFPILV 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++GG F+FPIL 
Sbjct: 100 ECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGGFIFPILA 159

Query: 121 WAYE 123
           WAYE
Sbjct: 160 WAYE 163

[Close]

BLAST of CsGy3G021637 vs. NCBI nr
Match: KAA0051565.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 7.86e-41
Identity = 66/123 (53.66%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S  GTD D++KM +LYFL+ FL+PKQ
Sbjct: 134 INHEDIKGGGRLKGVYFENLKTVTRQYLNVMFNISTAGTDDDKIKMAKLYFLEIFLIPKQ 193

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++ GF+FPIL W
Sbjct: 194 ECLSVDWDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAW 253

Query: 121 AYE 123
           AYE
Sbjct: 254 AYE 256

[Close]

BLAST of CsGy3G021637 vs. NCBI nr
Match: TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 151 bits (382), Expect = 1.38e-40
Identity = 67/123 (54.47%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  DDIKGGG +K +YF+    +MR Y++V F +S   TD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++   SK  TG+++ GF+F IL W
Sbjct: 100 ECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISIWGFIFLILAW 159

Query: 121 AYE 123
           AYE
Sbjct: 160 AYE 162

[Close]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL
Match: A0A5A7THT9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00190 PE=4 SV=1)

HSP 1 Score: 155 bits (392), Expect = 2.38e-42
Identity = 68/123 (55.28%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S   TD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHEDIKGGGWLKGVYFENLKTVTRQYLNVMFNISTARTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++GGF+FPIL W
Sbjct: 100 ECLNVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGFIFPILAW 159

Query: 121 AYE 123
           AYE
Sbjct: 160 AYE 162

[Close]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 156 bits (395), Expect = 8.17e-42
Identity = 68/123 (55.28%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DI GGG +K +YF+    + R Y++V F +S TGTD DR+KM +LYFL+SFL+PKQ
Sbjct: 271 INHEDINGGGRLKGVYFENLKTVTRQYLNVMFNISTTGTDDDRIKMAKLYFLESFLIPKQ 330

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           +   VD D ++MVDD+E+F  YPWGR+AF+LLVD M++   SK  TG+++GGF+FPIL W
Sbjct: 331 ECPSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISMGGFIFPILAW 390

Query: 121 AYE 123
           AYE
Sbjct: 391 AYE 393

[Close]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL
Match: A0A5D3CEX9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00200 PE=4 SV=1)

HSP 1 Score: 153 bits (387), Expect = 1.75e-41
Identity = 69/124 (55.65%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S  GTD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHEDIKGGGRLKWVYFENLKTVTRQYLNVMFNISTAGTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGG-FVFPILV 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++GG F+FPIL 
Sbjct: 100 ECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGGFIFPILA 159

Query: 121 WAYE 123
           WAYE
Sbjct: 160 WAYE 163

[Close]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL
Match: A0A5A7UD30 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001010 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 3.80e-41
Identity = 66/123 (53.66%), Postives = 93/123 (75.61%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  +DIKGGG +K +YF+    + R Y++V F +S  GTD D++KM +LYFL+ FL+PKQ
Sbjct: 134 INHEDIKGGGRLKGVYFENLKTVTRQYLNVMFNISTAGTDDDKIKMAKLYFLEIFLIPKQ 193

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++A  SK  TG+++ GF+FPIL W
Sbjct: 194 ECLSVDWDYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAW 253

Query: 121 AYE 123
           AYE
Sbjct: 254 AYE 256

[Close]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL
Match: A0A5D3DKA6 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00030 PE=4 SV=1)

HSP 1 Score: 151 bits (382), Expect = 6.67e-41
Identity = 67/123 (54.47%), Postives = 92/123 (74.80%), Query Frame = 0


Query: 1   IPKDDIKGGGHIKDMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQ 60
           I  DDIKGGG +K +YF+    +MR Y++V F +S   TD DR+KM +LYFL+SFL+PKQ
Sbjct: 40  INHDDIKGGGRLKGVYFENLKTVMRQYLNVMFNISTARTDDDRIKMAKLYFLESFLIPKQ 99

Query: 61  DSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASSKCATGMTLGGFVFPILVW 120
           + + VD D ++MVDD+E+F  YPWGR+AF+LLVD M++   SK  TG+++ GF+F IL W
Sbjct: 100 ECLSVDWDHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISIWGFIFLILAW 159

Query: 121 AYE 123
           AYE
Sbjct: 160 AYE 162

[Close]

BLAST of CsGy3G021637 vs. TAIR 10
Match: AT5G28810.1 (Domain of unknown function (DUF1985) )

HSP 1 Score: 45.1 bits (105), Expect = 4.9e-05
Identity = 32/111 (28.83%), Postives = 51/111 (45.95%), Query Frame = 0


Query: 14  DMYFDVESKIMRMYIDVGFKVSKTGTDTDRLKMTQLYFLDSFLLPKQDSVYVDIDRVLMV 73
           DM+ + ++++ R+     F++SKT +   R+ + +L  L   +        V +     V
Sbjct: 79  DMFDESDTELERV-----FEISKTWSLEKRMMVGRLCLLSVGVHGIHHGSRVPLSSAKRV 138

Query: 74  DDEELFRTYPWGRLAFDLLVDAMHKAASSKC-ATGMTLGGFVFPILVWAYE 124
            D   F  YPWGR+AFD L   +      KC      + G V  +LVW YE
Sbjct: 139 LDPVAFEKYPWGRVAFDSL---LRSVKIVKCDGDSYVIHGCVQALLVWIYE 181

[Close]

BLAST of CsGy3G021637 vs. TAIR 10
Match: AT2G07240.1 (cysteine-type peptidases;cysteine-type peptidases )

HSP 1 Score: 44.7 bits (104), Expect = 6.4e-05
Identity = 21/64 (32.81%), Postives = 36/64 (56.25%), Query Frame = 0


Query: 43  RLKMTQLYFLDSFLLPKQDSVYVDIDRVLMVDDEELFRTYPWGRLAFDLLVDAMHKAASS 102
           RL+   L  +D FLLP      +  D   M +D + F +YPWGRL+F++++ ++ +    
Sbjct: 13  RLRYACLALVDGFLLPTSHYPKIIKDHAEMSEDLQGFLSYPWGRLSFEMMMTSIKEREVE 72

Query: 103 KCAT 107
           + AT
Sbjct: 73  QLAT 76

The following BLAST results are available for this feature:

BLAST of CsGy3G021637 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G021637 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040869.1	4.92e-42	55.28	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0047596.1	1.69e-41	55.28	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK09852.1	3.62e-41	55.65	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0051565.1	7.86e-41	53.66	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK23840.1	1.38e-40	54.47	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of CsGy3G021637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7THT9	2.38e-42	55.28	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00...	[more]
A0A5A7U047	8.17e-42	55.28	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00...	[more]
A0A5D3CEX9	1.75e-41	55.65	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G002...	[more]
A0A5A7UD30	3.80e-41	53.66	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00...	[more]
A0A5D3DKA6	6.67e-41	54.47	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00...	[more]

BLAST of CsGy3G021637 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28810.1	4.9e-05	28.83	Domain of unknown function (DUF1985)	[more]
AT2G07240.1	6.4e-05	32.81	cysteine-type peptidases;cysteine-type peptidases	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015410	Domain of unknown function DUF1985	PFAM	PF09331	DUF1985	coord: 13..93 e-value: 3.6E-14 score: 52.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021637.1	CsGy3G021637.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane