Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: five_prime_UTRexonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCGCTTCACACAAGATCACTATTTTTCTCTCTTCTTCTTCCCTCCGCCCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA
mRNA sequence
ATTCGCTTCACACAAGATCACTATTTTTCTCTCTTCTTCTTCCCTCCGCCCCATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA
Coding sequence (CDS)
ATGGCCAGACCTTTCCCAACCATTTCAAATCTCTCTCATCCTCTCCATCTTCTATTTTTCTCAACTCATTTCTCATTTCTCATCCTTTCAACCTCAGTTATCCTCTCCATCTTCGCCCTCCTCATTTTCCTCTGCACATCTTCAAGAAAATCCAACAAATCGCAGCAGGGGAGGAATAATTTTGTTTCCAAAATGAACAGTAACATCAGTTCTAGAGCAATTTCAATGGCCAAGATGATTTCGTGGAGGAAAGTGGAAGCAGCCGAGGAAGAGGAAGAAGAAGAAGAAAGAGGATCAGGAGGTTGTGATTTTATTGATAAAGATGAAGAAGAAGAGGTTTGGAGGAAAACGATTATTAGAGGTGAACGATGTCGTCCGTTAGAATTTTCTGGTAAAATTGATTATGATTCTGATGGAAATCTGTTGTGTGATTCAAATAGGGATTTCAAATAA
Protein sequence
MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK*
Homology
BLAST of CsGy3G021045 vs. NCBI nr
Match:
KGN57848.1 (hypothetical protein Csa_010872 [Cucumis sativus])
HSP 1 Score: 282 bits (721), Expect = 2.05e-95
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEE-RGSGGCDFIDKDEEEEVWRKTII 120
FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEE RGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151
BLAST of CsGy3G021045 vs. NCBI nr
Match:
TYK22452.1 (hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa])
HSP 1 Score: 236 bits (603), Expect = 1.69e-77
Identity = 130/150 (86.67%), Postives = 136/150 (90.67%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
MARPFPTISNLSH HLLFFSTHFSF ILSTS ILSIFALLIFLCTSS KSNKSQQG+
Sbjct: 1 MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIR 120
FVSKMNSNISSRAISMAK+ISWRKVEAA+E EEE RGSG CD ++ +EEEVWRKTIIR
Sbjct: 61 FVSKMNSNISSRAISMAKIISWRKVEAADELEEE--RGSGSCDELE--DEEEVWRKTIIR 120
Query: 121 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
GERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146
BLAST of CsGy3G021045 vs. NCBI nr
Match:
KAG6607004.1 (hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 170 bits (431), Expect = 2.76e-51
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKS---QQG 60
MA+PFP+ SN H HL F S ++++ +LSIFAL+IFLCTSSRKS K QQ
Sbjct: 1 MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPILLQQ- 60
Query: 61 RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKT 120
NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E G GG D D ++EVWRKT
Sbjct: 61 -RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGGGGGGGGGFDLSGDDYDDEVWRKT 120
Query: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
IIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 145
BLAST of CsGy3G021045 vs. NCBI nr
Match:
KAG7036703.1 (hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 168 bits (425), Expect = 2.11e-50
Identity = 101/153 (66.01%), Postives = 117/153 (76.47%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKS---QQG 60
MA+PFP+ SN H HL F S ++++ +LSIFAL+IFLCTSSRKS K QQ
Sbjct: 1 MAKPFPSFSN--HSYHLPFSSPS----LVASIAVLSIFALVIFLCTSSRKSKKPILLQQ- 60
Query: 61 RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKT 120
NFV+K+NSNISSRAIS+AKMISWRKVEAA+E+E G GG D D ++EVWRKT
Sbjct: 61 -RNFVAKVNSNISSRAISIAKMISWRKVEAADEDEGG--GGGGGFDLSGDDYDDEVWRKT 120
Query: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
IIRGERCRPLEFSGKIDYDSDGNLLCDS R+FK
Sbjct: 121 IIRGERCRPLEFSGKIDYDSDGNLLCDSKREFK 143
BLAST of CsGy3G021045 vs. NCBI nr
Match:
XP_038906595.1 (uncharacterized protein LOC120092546 [Benincasa hispida])
HSP 1 Score: 163 bits (413), Expect = 2.47e-48
Identity = 103/137 (75.18%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLH---LLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQG 60
MAR FP+ISN SH H L F ST+FSFLI S +V LSIFAL++FLCTSSRKSNKSQQ
Sbjct: 1 MARLFPSISNPSHHHHHHLLPFSSTNFSFLISSIAV-LSIFALVVFLCTSSRKSNKSQQ- 60
Query: 61 RNNFVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDE-EEEVWRK 120
R NFVSKMNSNISSRAISMAKMISWRKVEAA+EE+EEE RGS D++E EEEVWRK
Sbjct: 61 RRNFVSKMNSNISSRAISMAKMISWRKVEAADEEDEEERRGSCNLSGDDEEEDEEEVWRK 120
Query: 121 TIIRGERCRPLEFSGKI 133
TIIRGERCRPLEFS +
Sbjct: 121 TIIRGERCRPLEFSDSV 135
BLAST of CsGy3G021045 vs. ExPASy TrEMBL
Match:
A0A0A0L7R8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1)
HSP 1 Score: 282 bits (721), Expect = 9.92e-96
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN
Sbjct: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEE-RGSGGCDFIDKDEEEEVWRKTII 120
FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEE RGSGGCDFIDKDEEEEVWRKTII
Sbjct: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEEERGSGGCDFIDKDEEEEVWRKTII 120
Query: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 RGERCRPLEFSGKIDYDSDGNLLCDSNRDFK 151
BLAST of CsGy3G021045 vs. ExPASy TrEMBL
Match:
A0A5D3DFS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold712G00010 PE=4 SV=1)
HSP 1 Score: 236 bits (603), Expect = 8.16e-78
Identity = 130/150 (86.67%), Postives = 136/150 (90.67%), Query Frame = 0
Query: 1 MARPFPTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRNN 60
MARPFPTISNLSH HLLFFSTHFSF ILSTS ILSIFALLIFLCTSS KSNKSQQG+
Sbjct: 1 MARPFPTISNLSHHPHLLFFSTHFSFPILSTSTILSIFALLIFLCTSSTKSNKSQQGKTT 60
Query: 61 FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIR 120
FVSKMNSNISSRAISMAK+ISWRKVEAA+E EEE RGSG CD ++ +EEEVWRKTIIR
Sbjct: 61 FVSKMNSNISSRAISMAKIISWRKVEAADELEEE--RGSGSCDELE--DEEEVWRKTIIR 120
Query: 121 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 150
GERCRPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 121 GERCRPLEFSGKIDYDSDGNLLCDSNRDFK 146
BLAST of CsGy3G021045 vs. ExPASy TrEMBL
Match:
A0A5A7V4T5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00580 PE=4 SV=1)
HSP 1 Score: 141 bits (356), Expect = 4.42e-41
Identity = 74/86 (86.05%), Postives = 79/86 (91.86%), Query Frame = 0
Query: 65 MNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKDEEEEVWRKTIIRGERC 124
MNSNISSRAISMAK+ISWRKVEAA+E EEE RGSG CD ++ +EEEVWRKTIIRGERC
Sbjct: 1 MNSNISSRAISMAKIISWRKVEAADELEEE--RGSGSCDELE--DEEEVWRKTIIRGERC 60
Query: 125 RPLEFSGKIDYDSDGNLLCDSNRDFK 150
RPLEFSGKIDYDSDGNLLCDSNRDFK
Sbjct: 61 RPLEFSGKIDYDSDGNLLCDSNRDFK 82
BLAST of CsGy3G021045 vs. ExPASy TrEMBL
Match:
A0A5E4G755 (PREDICTED: LOC100277003 OS=Prunus dulcis OX=3755 GN=ALMOND_2B003044 PE=4 SV=1)
HSP 1 Score: 114 bits (285), Expect = 1.84e-29
Identity = 76/157 (48.41%), Postives = 101/157 (64.33%), Query Frame = 0
Query: 1 MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTSSRKSNKSQQGRN 60
MARP P+ S SH HL +HF F ++ V S+F+L+IFLC +SRKS KS + +
Sbjct: 1 MARPLAPSFSMASH--HLFQHQSHFLFALI---VFFSMFSLVIFLC-ASRKSKKSHKKKE 60
Query: 61 N-----------FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFIDKD 120
F++K+NS ISS+A++MAKM+SWRK+EA EE++++ D D
Sbjct: 61 EAITNSESKDAKFIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKD--------DDDDDH 120
Query: 121 EEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 145
+E VWRK+II GERC PL FSGKIDYDSDGNL +S
Sbjct: 121 SDEAVWRKSIIMGERCAPLNFSGKIDYDSDGNLQPES 143
BLAST of CsGy3G021045 vs. ExPASy TrEMBL
Match:
A0A6J5WQZ0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=4 SV=1)
HSP 1 Score: 112 bits (281), Expect = 1.65e-28
Identity = 79/177 (44.63%), Postives = 107/177 (60.45%), Query Frame = 0
Query: 1 MARPF-PTISNLSHPLHLLFFSTHFSFLILSTSVILSIFALLIFLCTS--SRKSN-KSQQ 60
MARP P+ S SH HL +HF F + VI S+F+LLIFLC S S+KSN K ++
Sbjct: 1 MARPLAPSFSMASH--HLFQHPSHFLF---APIVIFSMFSLLIFLCASHKSKKSNEKKEE 60
Query: 61 GRNN-------FVSKMNSNISSRAISMAKMISWRKVEAAEEEEEEEERGSGGCDFI---- 120
N F++K+NS ISS+A++MAKM+SWRK+EA EE++++++ + +
Sbjct: 61 AITNSESKDAKFIAKLNSKISSKALAMAKMVSWRKMEAGEEDQKDDDDDDHSDEAVWRKS 120
Query: 121 -----------------DKDEEEEVWRKTIIRGERCRPLEFSGKIDYDSDGNLLCDS 145
D D +E VWRK+II GERC PL FSGKIDYDS+GNLL +S
Sbjct: 121 IIMGERCTPLNDDDDDDDDDRDEAVWRKSIIMGERCAPLNFSGKIDYDSEGNLLPES 172
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KGN57848.1 | 2.05e-95 | 99.34 | hypothetical protein Csa_010872 [Cucumis sativus] | [more] |
TYK22452.1 | 1.69e-77 | 86.67 | hypothetical protein E5676_scaffold712G00010 [Cucumis melo var. makuwa] | [more] |
KAG6607004.1 | 2.76e-51 | 66.01 | hypothetical protein SDJN03_00346, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7036703.1 | 2.11e-50 | 66.01 | hypothetical protein SDJN02_00323, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_038906595.1 | 2.47e-48 | 75.18 | uncharacterized protein LOC120092546 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
A0A0A0L7R8 | 9.92e-96 | 99.34 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G348940 PE=4 SV=1 | [more] |
A0A5D3DFS8 | 8.16e-78 | 86.67 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7V4T5 | 4.42e-41 | 86.05 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5E4G755 | 1.84e-29 | 48.41 | PREDICTED: LOC100277003 OS=Prunus dulcis OX=3755 GN=ALMOND_2B003044 PE=4 SV=1 | [more] |
A0A6J5WQZ0 | 1.65e-28 | 44.63 | Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS21513 PE=... | [more] |
Match Name | E-value | Identity | Description | |