CsGy3G021017 (gene) Cucumber (Gy14) v2.1

Overview


Name	CsGy3G021017
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Description	Cold-regulated protein
Location	Gy14Chr3: 18845545 .. 18846005 (-)
RNA-Seq Expression	CsGy3G021017
Synteny	CsGy3G021017

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGCGAATTCGTCCTCCTCCTCCTACTCCTCCTATTGCTCGTTATACGCTCCGTTGTGCTCCGGCGAATGGGTATGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGAGATAATACGCAATAATGCTGTTCCTTTACATGTTGTTTTTCCCCAAGTCCAATAATGTATATTAATAATGGATCTCAATTTAAGAGTAAAATTAATAGGCTAAATATACCCTATGTCTCTTCTCATATATATATATATATATATATACCCTATGTGTAGCC

mRNA sequence

CGCGAATTCGTCCTCCTCCTCCTACTCCTCCTATTGCTCGTTATACGCTCCGTTGTGCTCCGGCGAATGGGTATGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGAGATAATACGCAATAATGCTGTTCCTTTACATGTTGTTTTTCCCCAAGTCCAATAATGTATATTAATAATGGATCTCAATTTAAGAGTAAAATTAATAGGCTAAATATACCCTATGTCTCTTCTCATATATATATATATATATATATACCCTATGTGTAGCC

Coding sequence (CDS)

ATGGGTATGGGAATCGGTGTTCCGATCTGCATTGAATGTGGGACCCACAGCAATCCGTGCAGATGCAAGGTGGTGGGGCCGACCCTGGGGTTTTTGGCTTTCGCTGTGGCGGCGGTGGTGGAGTGGCCGGTGGGAGCTCTGGTTTTTTGCTTCCGCCATCACAAGGGGCGCCGTATCATGGCGCATCCGGCTACCGTCGTATACCCGTCAGTGTCTAATGCGGTTCCGATTTGA

Protein sequence

MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVYPSVSNAVPI*

Homology

[Close]

BLAST of CsGy3G021017 vs. NCBI nr
Match: XP_031737948.1 (uncharacterized protein LOC116402578 [Cucumis sativus])

HSP 1 Score: 166 bits (420), Expect = 7.63e-52
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MG+GIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. NCBI nr
Match: XP_008457074.1 (PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo])

HSP 1 Score: 163 bits (412), Expect = 1.27e-50
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +G+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of CsGy3G021017 vs. NCBI nr
Match: XP_023528466.1 (uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159 bits (401), Expect = 6.07e-49
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIGVPIC+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGIGVPICVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHP TVVYPSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. NCBI nr
Match: XP_022935253.1 (uncharacterized protein LOC111442190 [Cucurbita moschata])

HSP 1 Score: 158 bits (400), Expect = 8.62e-49
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHP TVVYPSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. NCBI nr
Match: XP_022143411.1 (uncharacterized protein LOC111013291 [Momordica charantia])

HSP 1 Score: 157 bits (397), Expect = 2.48e-48
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL
Match: A0A0A0LA45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1)

HSP 1 Score: 166 bits (420), Expect = 3.70e-52
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          MG+GIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MGVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL
Match: A0A1S3C5C8 (uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 6.15e-51
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +G+GVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM
Sbjct: 1  MAVGVGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNA+PI
Sbjct: 61 AHPATVVYPSVSNAIPI 77

[Close]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL
Match: A0A6J1FA13 (uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC111442190 PE=4 SV=1)

HSP 1 Score: 158 bits (400), Expect = 4.18e-49
Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIGVP+C+ECGTH NPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIM
Sbjct: 1  MAVGIGVPVCVECGTHRNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHP TVVYPSVSNAVPI
Sbjct: 61 AHPVTVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL
Match: A0A6J1CQ64 (uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013291 PE=4 SV=1)

HSP 1 Score: 157 bits (397), Expect = 1.20e-48
Identity = 72/77 (93.51%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MGMGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIM 60
          M +GIGVPICIECGTHSNPCRCKVVGPTLGFLAFA AAVVEWPVGALV+CFRH KGRRIM
Sbjct: 1  MAVGIGVPICIECGTHSNPCRCKVVGPTLGFLAFAAAAVVEWPVGALVYCFRHAKGRRIM 60

Query: 61 AHPATVVYPSVSNAVPI 77
          AHPATVVYPSVSNAVPI
Sbjct: 61 AHPATVVYPSVSNAVPI 77

[Close]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL
Match: A0A6J1J4E8 (uncharacterized protein LOC111482529 OS=Cucurbita maxima OX=3661 GN=LOC111482529 PE=4 SV=1)

HSP 1 Score: 149 bits (377), Expect = 1.11e-45
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 9  ICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATVVY 68
          IC+ECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALV+CFRHHKGRRIMAHPATVVY
Sbjct: 2  ICVECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVYCFRHHKGRRIMAHPATVVY 61

Query: 69 PSVSNAVPI 77
          PSVSNAVPI
Sbjct: 62 PSVSNAVPI 70

[Close]

BLAST of CsGy3G021017 vs. TAIR 10
Match: AT3G03341.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 119.4 bits (298), Expect = 1.3e-27
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 7  VPICIECGTHSNPCRCKVVGPTLGFLAFAVAAVVEWPVGALVFCFRHHKGRRIMAHPATV 66
          +PIC++CGT  NPCRCKVVGPTLG +AF  A +VEWPVGALV+ F+H KGRRIM HPAT 
Sbjct: 2  IPICVQCGTGGNPCRCKVVGPTLGLVAFVAAGIVEWPVGALVYIFKHAKGRRIMGHPATH 61

Query: 67 VYPSVSNAVPI 78
          VYP VS ++PI
Sbjct: 62 VYPKVSRSIPI 72

The following BLAST results are available for this feature:

BLAST of CsGy3G021017 vs.


Match Name	E-value	Identity	Description

BLAST of CsGy3G021017 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737948.1	7.63e-52	98.70	uncharacterized protein LOC116402578 [Cucumis sativus]	[more]
XP_008457074.1	1.27e-50	94.81	PREDICTED: uncharacterized protein LOC103496842 [Cucumis melo]	[more]
XP_023528466.1	6.07e-49	92.21	uncharacterized protein LOC111791385 [Cucurbita pepo subsp. pepo]	[more]
XP_022935253.1	8.62e-49	90.91	uncharacterized protein LOC111442190 [Cucurbita moschata]	[more]
XP_022143411.1	2.48e-48	93.51	uncharacterized protein LOC111013291 [Momordica charantia]	[more]

BLAST of CsGy3G021017 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA45	3.70e-52	98.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G346910 PE=4 SV=1	[more]
A0A1S3C5C8	6.15e-51	94.81	uncharacterized protein LOC103496842 OS=Cucumis melo OX=3656 GN=LOC103496842 PE=...	[more]
A0A6J1FA13	4.18e-49	90.91	uncharacterized protein LOC111442190 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]
A0A6J1CQ64	1.20e-48	93.51	uncharacterized protein LOC111013291 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1J4E8	1.11e-45	97.10	uncharacterized protein LOC111482529 OS=Cucurbita maxima OX=3661 GN=LOC111482529...	[more]

BLAST of CsGy3G021017 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03341.1	1.3e-27	70.42	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34673	FAMILY NOT NAMED	coord: 1..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy3G021017.1	CsGy3G021017.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane