CsGy3G020270 (gene) Cucumber (Gy14) v2.1

Overview
NameCsGy3G020270
Typegene
OrganismCucumis sativus L. var. sativus cv. Gy14 (Cucumber (Gy14) v2.1)
Descriptionconserved peptide upstream open reading frame 9
LocationGy14Chr3: 16911196 .. 16911564 (+)
RNA-Seq ExpressionCsGy3G020270
SyntenyCsGy3G020270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGGGACGTCTATGAATTTGGGTGGTTTGTTTATTGTATTCTATTGAAGGTTGAGAGTTTTCTGATTTCATCTTGGGGTGTTATCTCTATTTTTGCAGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCTCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACGTATGTTCCTACTTACACTATCATGTTTGTTGTTGTAGCATTATCATTTGTGTGTTGGCTAACGACTAATCTCTTGTTTCTTCTTCTGCAGTGCGTTCGAAAGCCATCCTGA

mRNA sequence

ATGTTAGGGACGTCTATGAATTTGGGTGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCTCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCGTTCGAAAGCCATCCTGA

Coding sequence (CDS)

ATGTTAGGGACGTCTATGAATTTGGGTGCGAATGATTTAATGGAGTCAAAAGGTGGTAAGAAGAAGTCTAGTAGTAGTAGTAGTAGTAAATCTCTTTTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACGTCCGACCACACGGTGGAATCAAGAAGTTCAGATCTGCTGCTTACTCCAACTGCGTTCGAAAGCCATCCTGA

Protein sequence

MLGTSMNLGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS*
Homology
BLAST of CsGy3G020270 vs. NCBI nr
Match: KAE8650573.1 (hypothetical protein Csa_010068 [Cucumis sativus])

HSP 1 Score: 127 bits (320), Expect = 6.94e-37
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 1  MLGTSMNLGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYS 60
          ML TSMNLGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYS
Sbjct: 1  MLRTSMNLGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYS 60

Query: 61 NCVRKPS 67
          NCVRKPS
Sbjct: 61 NCVRKPS 67

BLAST of CsGy3G020270 vs. NCBI nr
Match: QHO12318.1 (uncharacterized protein DS421_15g505930 [Arachis hypogaea])

HSP 1 Score: 110 bits (275), Expect = 1.30e-29
Identity = 56/60 (93.33%), Postives = 57/60 (95.00%), Query Frame = 0

Query: 8   LGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
           LG NDLMESKGGKK SSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSNC RKPS
Sbjct: 41  LGLNDLMESKGGKKSSSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 100

BLAST of CsGy3G020270 vs. NCBI nr
Match: TKY69456.1 (S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus])

HSP 1 Score: 109 bits (272), Expect = 3.23e-29
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0

Query: 9  GANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          G N+LMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRP+GGIKKFRSAAYSNC RKPS
Sbjct: 37 GLNELMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPNGGIKKFRSAAYSNCARKPS 95

BLAST of CsGy3G020270 vs. NCBI nr
Match: KAG6581173.1 (hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109 bits (272), Expect = 7.26e-29
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 0

Query: 10  ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
           ANDLMESKGGKKKSSSSSS KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 67  ANDLMESKGGKKKSSSSSS-KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 123

BLAST of CsGy3G020270 vs. NCBI nr
Match: KAF1890100.1 (hypothetical protein Lal_00025433 [Lupinus albus])

HSP 1 Score: 107 bits (267), Expect = 8.30e-29
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 8  LGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          LG NDLMESKGGKKKSSSSSS  SLFYEAPLGYSIEDVRP+GGI+KFRSAAYSNC RKPS
Sbjct: 7  LGLNDLMESKGGKKKSSSSSSKSSLFYEAPLGYSIEDVRPNGGIEKFRSAAYSNCARKPS 66

BLAST of CsGy3G020270 vs. ExPASy TrEMBL
Match: A0A0A0LAP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271350 PE=4 SV=1)

HSP 1 Score: 115 bits (287), Expect = 7.42e-32
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 0

Query: 10 ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 35 ANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 92

BLAST of CsGy3G020270 vs. ExPASy TrEMBL
Match: A0A6A5NYN2 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00025433 PE=4 SV=1)

HSP 1 Score: 107 bits (267), Expect = 4.02e-29
Identity = 54/60 (90.00%), Postives = 56/60 (93.33%), Query Frame = 0

Query: 8  LGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          LG NDLMESKGGKKKSSSSSS  SLFYEAPLGYSIEDVRP+GGI+KFRSAAYSNC RKPS
Sbjct: 7  LGLNDLMESKGGKKKSSSSSSKSSLFYEAPLGYSIEDVRPNGGIEKFRSAAYSNCARKPS 66

BLAST of CsGy3G020270 vs. ExPASy TrEMBL
Match: A0A6A6MF36 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_032180 PE=4 SV=1)

HSP 1 Score: 104 bits (260), Expect = 7.51e-28
Identity = 54/57 (94.74%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 11 NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          NDLMESKGGKKKSSSS   KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 30 NDLMESKGGKKKSSSS---KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 83

BLAST of CsGy3G020270 vs. ExPASy TrEMBL
Match: A0A5J5AL23 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005221 PE=4 SV=1)

HSP 1 Score: 105 bits (263), Expect = 1.37e-27
Identity = 54/62 (87.10%), Postives = 57/62 (91.94%), Query Frame = 0

Query: 6   MNLGANDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRK 65
           +++G NDLMESKGGKKKSSSS   KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNC RK
Sbjct: 83  LSVGLNDLMESKGGKKKSSSS---KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCARK 141

Query: 66  PS 67
           PS
Sbjct: 143 PS 141

BLAST of CsGy3G020270 vs. ExPASy TrEMBL
Match: A7Y7H5 (Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis OX=3755 PE=2 SV=1)

HSP 1 Score: 103 bits (256), Expect = 1.48e-27
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = 0

Query: 11 NDLMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 67
          N+LMESKGGKKKSSSS   KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS
Sbjct: 3  NELMESKGGKKKSSSS---KSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 56

BLAST of CsGy3G020270 vs. TAIR 10
Match: AT3G02468.1 (conserved peptide upstream open reading frame 9 )

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-18
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 0

Query: 13 LMESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 68
          +MESKGGKKKSSSSS   SLFYEAPLGYSIEDVRP+GGIKKF+S+ YSNC ++PS
Sbjct: 1  MMESKGGKKKSSSSS---SLFYEAPLGYSIEDVRPNGGIKKFKSSVYSNCSKRPS 52

BLAST of CsGy3G020270 vs. TAIR 10
Match: AT3G25572.1 (conserved peptide upstream open reading frame 11 )

HSP 1 Score: 87.0 bits (214), Expect = 6.2e-18
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0

Query: 14 MESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 68
          ME+KGGKKKSS+SSS  SLF+EAPL YSIEDVRP+GGIKKFRSAAYSN   KPS
Sbjct: 1  METKGGKKKSSNSSSRDSLFFEAPLRYSIEDVRPNGGIKKFRSAAYSNITGKPS 54

BLAST of CsGy3G020270 vs. TAIR 10
Match: AT5G15948.1 (conserved peptide upstream open reading frame 10 )

HSP 1 Score: 79.7 bits (195), Expect = 9.9e-16
Identity = 40/54 (74.07%), Postives = 45/54 (83.33%), Query Frame = 0

Query: 14 MESKGGKKKSSSSSSSKSLFYEAPLGYSIEDVRPHGGIKKFRSAAYSNCVRKPS 68
          MESK G KKSSS+S   SL YEAPLGYSIEDVRP GGIKKF+S+ YSNC ++PS
Sbjct: 1  MESKAGNKKSSSNS---SLCYEAPLGYSIEDVRPFGGIKKFKSSVYSNCAKRPS 51

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAE8650573.16.94e-3798.51hypothetical protein Csa_010068 [Cucumis sativus][more]
QHO12318.11.30e-2993.33uncharacterized protein DS421_15g505930 [Arachis hypogaea][more]
TKY69456.13.23e-2993.22S-adenosyl-l-methionine decarboxylase leader peptide [Spatholobus suberectus][more]
KAG6581173.17.26e-2998.28hypothetical protein SDJN03_21175, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAF1890100.18.30e-2990.00hypothetical protein Lal_00025433 [Lupinus albus][more]
Match NameE-valueIdentityDescription
A0A0A0LAP27.42e-32100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G271350 PE=4 SV=1[more]
A0A6A5NYN24.02e-2990.00Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00025433 PE=4 SV=1[more]
A0A6A6MF367.51e-2894.74Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_032180 PE=4 SV=1[more]
A0A5J5AL231.37e-2787.10Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_005221 PE=4 SV=1[more]
A7Y7H51.48e-2792.98Putative S-adenosylmethionine decarboxylase (Fragment) OS=Prunus dulcis OX=3755 ... [more]
Match NameE-valueIdentityDescription
AT3G02468.11.6e-1880.00conserved peptide upstream open reading frame 9 [more]
AT3G25572.16.2e-1881.48conserved peptide upstream open reading frame 11 [more]
AT5G15948.19.9e-1674.07conserved peptide upstream open reading frame 10 [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (Gy14) v2.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012511S-adenosyl-l-methionine decarboxylase leader peptidePFAMPF08132AdoMetDC_leadercoord: 14..67
e-value: 1.5E-32
score: 111.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availablePANTHERPTHR35727BNAA05G33520D PROTEINcoord: 7..67
NoneNo IPR availablePANTHERPTHR35727:SF7SUBFAMILY NOT NAMEDcoord: 7..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy3G020270.2CsGy3G020270.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane